Array 1 588267-589886 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013688.1 Streptococcus gallolyticus strain ICDDRB-NRC-S1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 588267 36 100.0 30 .................................... TGGAAATTAAAGACCAATTTATCAGTGATT 588333 36 100.0 30 .................................... ACAAGCAAGTTTTAGCTGATCTACGCAAAC 588399 36 100.0 31 .................................... TCACATTGACATTTTTCGGCAAACGAGCACA 588466 36 100.0 30 .................................... TTAGAACAGGTGTTTAGCGAATGGTTGCAA 588532 36 100.0 30 .................................... GAAAAAGGGACGAGATAAAGAACAATTACT 588598 36 100.0 30 .................................... TCTGAATTGCCAAAACCAAAATCTAAAGAA 588664 36 100.0 30 .................................... TCCCGCTCGGTTTTAAAAGTGACAGCGCAT 588730 36 100.0 30 .................................... TTTCTCCTGCACGTTTATATTTTATTTTCT 588796 36 100.0 30 .................................... GCCACCCTTGTTTTTCCAGTACCTTGTTTC 588862 36 100.0 30 .................................... CTTTTATCTCATTATGATTTATTTTTATCT 588928 36 100.0 30 .................................... ATTTAAGCGTTAAAATGCTTGCAGAACCTG 588994 36 100.0 30 .................................... CTACTTACACTTACAAATGGTCTCGACGTG 589060 36 100.0 30 .................................... TCTCACAAAGTAGTGGACTATGATGAAGAA 589126 36 100.0 30 .................................... GACAACGAACGAGAGAGTTTATTAGAAGTG 589192 36 100.0 30 .................................... CCGAAATCCAAATTGTTGATAGTCCAGATA 589258 36 100.0 30 .................................... CCAGCAGTCTAGAACTCCTTTGGATTTTAT 589324 36 100.0 30 .................................... AAAATCAATCTTCTTTTTTTATGCGGTCGG 589390 36 100.0 29 .................................... CTAAACCATCTCTGGATAATTGCTTTTCA 589455 36 100.0 30 .................................... AATCAAACAAAGCTGATCATCACCAGAACG 589521 36 100.0 30 .................................... ATTTGAGTAATGAAGTTATAGGTTTAACAC 589587 36 100.0 30 .................................... TCATAACAGATAAGTCATTAGTATCATCCG 589653 36 100.0 30 .................................... AAAAGTTCAATAAGTTTATCGAATGGTGGA 589719 36 100.0 30 .................................... TTTTGGGTCGTTCGGGAATTTACTTGGAAA 589785 36 100.0 30 .................................... TCTTCAGATAAAATAGGTGTGTGTTCCCCA 589851 36 97.2 0 ................................T... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : GGATGACTATCTTGATTATTCTTCTTTTATAACTATTTGTAAGACTATTAGGCAAATGACTGAGAAATTTCCTAATTTTTATTGTACAATTTTCCCGTCAAATGAAAGTTATTTATATGTTACTAAAGAAACAGTTGAACATGTTACCATTGTTTCAGACTTTATTGAATCATTGTTTGACTTAGATTTTATGTATGAAAGATTTATTGGTAGATACCCATCAAATAATATTCCAAGTAAAAGTGAGTTTTTGATATTACTTCAGAAAAATGCAAGTTATCTGTTTAGTGATCAGATTTCATATATCAGTTTAGGAATTTCAGATATGGTAGCCATTAAGATTTTAAATAGTTTATACCAGTATGATAAGTCTGTTGTATATCCAATACCTAAGATAGACCCGCTAGAAATAAGCTTTTTAAAGGACAAAGATTGACTTTTTTTCCTAATCAAACTATAATCGATTTGTAGGATACAAAAACTAAAAATGACGATTTGAG # Right flank : CACTAATATGCTTTTAGACGAAATCATTTTATAATATTTAACCTTTTTAGCATCTTATGATGTTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAACAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATTATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAGGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTCGATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //