Array 1 362-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBVT01000011.1 Acinetobacter baumannii strain VB29123 NODE_11_length_106182_cov_47.9116_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 361 30 96.7 30 ............................A. GCCCAGAGTTAGCATCTTGATGGTTCTCAA 301 30 100.0 30 .............................. AAACAAAGACTTTGATTTAATCTGGTGGAA 241 30 93.3 30 ............................TG AAGCAGAACAAGTTGATATTGATTCACCTA 181 30 100.0 30 .............................. GAAGACAATAAGCGTATACCTATTCCAGAA 121 30 93.3 30 ............................TC TCGGCACAGGAGTGCATTCGAAGTTGATGA 61 30 93.3 0 ............................TG | ========== ====== ====== ====== ============================== ============================== ================== 6 30 96.1 30 GTTCATGGCGGCATACGCCATTTAGAAAGT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GAATGGGTATTAGAACTCAGTGAAGATATGTG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1190-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBVT01000107.1 Acinetobacter baumannii strain VB29123 NODE_107_length_1233_cov_1.76102_ID_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1189 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 1129 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 1069 30 96.7 29 ............................C. GCGAAAGCGGGGTTTTTATTGCCTGAAAT 1010 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 950 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 890 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 830 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 770 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 710 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 650 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 590 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 530 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 470 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 410 30 100.0 29 .............................. GAAAAAAGCATCATATTGTTCGGGGCAGG 351 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 291 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 231 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 171 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 111 30 93.3 23 ............................AA CAATTGCCTGAGAGCCACCAGTA Deletion [59] 58 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 20 30 96.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCCATTTAGAAAAGTTACATCATTGCTTTTAGTCTTTTCTATC # Right flank : TTGATAGCTAAAGTAGAAATCAAAAGTCG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58303-57732 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBVT01000022.1 Acinetobacter baumannii strain VB29123 NODE_22_length_58351_cov_50.5321_ID_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 58302 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 58241 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 58181 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 58121 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 58061 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 58001 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 57941 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 57881 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 57821 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 57761 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 10 30 89.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : CATACGCCATTTAGAAATGTCATTGGCCGGCCATTCACAACCCCGATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //