Array 1 283168-282880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000011.1 Streptosporangium saharense strain CECT 8840 Ga0436955_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 283167 29 100.0 34 ............................. CGCGGGCCGTCATGAGCTGCCCGATCCCGAGCAC 283104 29 100.0 39 ............................. GCTGGCACTTCCGGGGCGGCCGGTGGATCTACGTCCACG 283036 29 100.0 35 ............................. GCATGAGGTGCGGCAAGACGAAAGGCTGGGTCTCC 282972 29 100.0 35 ............................. CCGAACCCGAGCTTCTGCGCGGCGGGTACGGCGAG 282908 29 93.1 0 ......T..................T... | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 98.6 36 GTCACTCATCACCCTGAAGGGTTCGCAAC # Left flank : CCTGCGGATGGGAGAGAGCGTCCTCTACCGGCTGCCCGGCCGGATCGTCGCCCCGGGCCGGGCGGAGCGCGGACGCCACCCGCGAGGTGCAGGTCGCCCGCTGGGCCTGGGGAAGTGGTACCGCAACCCCGCTCAGGAGAGCGTCCCATCAGCCTGACCTCGTTCCCAGGCAGTGAGGATCGCCGTTTCTCGTTCTGTGGAGATGCCCAACTCCGCGGAACGTTCGGACGACACCACGGTGCCAGTCTGGAGCCGCCGCCAGGTATCGGCCTCAATCTCCTTGATTGGTTCCCGGAAGTACTTCGTGGCCGTGCACAATGGATCACCGAGTTGTGCTGACCACTGTCGGTTGCCGGTGCGAGGAGGGAAGAAGCATCATCGGATCAGATCCAAAGATGATCAACGCTCTGACCTGCGCTTCTGCACTACCGCCGGACTGCTGCAGAAACAGCGAGTTCCACCCTCACAGCGCCAGCTCTGACCCGGGACTTTACCCTCGG # Right flank : ACGTGGGCCTCTGGCACGTTGGTGCCTCCAAGCTTCAGCGACATCGTGGGGTGCGGAGTCTAGGAGTGTGAGGTTGCGGTGGTGATGGTGGTGGGGTCCCAGTAGAAGGGGCGGCATTCGAGCATGCGGCCGTGCCGTACTCGGATCAGTTGCAGGATCAGGGTGTCCACCTCCTGGCCGGTCGCGCGGGCGCGGAACCGTACCCGGTTGCGTACCACCACCGTGTCCCTGTCGCCCCAGTGTTCCTGTTCGAGGAATTCCATGGACGACCAGGTCTCGCTGAACGTGGCCAGGAAGCGCTCAAGGCCGTCGTGTCCTCGCCACGTTCCGGTTCCCGTGAACGGCAGGCCGGGAGCTTGGTACAGGACAACCTCCGGGTCAAGATACGTGGCGACCTCGTCGTAGCTGGCCTTGCCGAACCCACCGGCGGCGACGTACGCGGCCTCGGCCCGATAGAACTTCTCCATCACCGTCCAGGCGTCCTGTGCCTGGTCCTCTGT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCATCACCCTGAAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 103611-103825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000013.1 Streptosporangium saharense strain CECT 8840 Ga0436955_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 103611 30 100.0 31 .............................. GGGACGCCGGGCCCGTACGGCTCGGCCAGCC 103672 30 93.3 32 .......T.....................A CGGTCCAGCCCGGGAAATCCTGCTCGATCTCC 103734 30 100.0 31 .............................. GGGGGACGATCCGTTGGGCGAGGCCCTGAGG 103795 29 83.3 0 ..............T..........GG.T- | AT [103818] Deletion [103824] ========== ====== ====== ====== ============================== ================================ ================== 4 30 94.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GGGTTACGTGGCCGCGCGGGACGCGGGTGGCGTCCGGAAGACGGCCGGGGACCGTACGGCGGGACGGCTGGCGCGTCGCCACCGACCCCGAGCGGGTCGAGCGCGACCTGACGTGCCTCGTTCTCACGCTCGTCGAGCTGATCCGCCAACTTGTCGAACGGCAGAGCGTACGCCGGATGGAGCAGGGCGACCTGTCCGACGAACAGATCGAGACGCTGGGCCTGACGCTGATGCGTCTTGAGGGGGCGATGAAGGAACTGTGCGACCACTTCGACCTGTCCCCCTCCGACCTCAACCTCGACCTCGGCCCCTTCGGAACCCTCCTTCCCATGGACTGACCCGGGCTTGTCGCGGCCTGGGTCCGCACACGGCGCCGTGCCTACGCGCTAACTTGTGGGTGCTGTCATCTTGGTGGAGTTCATGATCTGTCCGGAATGTCCAAGTCGCTGAAAGTAATGATTTTCCGCCTTCTTCGCCGACAAACCCGCAGGTCACCGAGG # Right flank : TTCATGAGGATTTCCAGCAGCTTGGAGGAAACGATGTCATCTGTTCCCGTGCCCGGGGGAAGGGGTAAGGAAAGGGCTACGGAGCCGGGGAGGGAGGGCTAGTCTCTGATCGTGCTCGGGCTGATATCGCCACACTTGCCAAGGTCCAGCATGCTCCAGCCCCTCCAGTCCGGACACTTCGCACCTTGTGCCACCCGTCGCACAGCAGGCGGGATCACTTGTTATGGCGCAAGCCGGACCCGCGATATGGGCGAAGGGCGGACAACGCCTAGGCTTGTCCGCATGACTACGTGGAGTGTGCCGGGGTTGCCCGCCAAGGGCCGCTGCCTGGTGATGGGCGTGGTCAACGTCACCCCCGACTCCTTCTCGGACGGGGGCCAGTGGTTCGACGCGGCGACAGCCGTACGGCATGGGCTTGAGCTGGTGGAACAGGGCGCGGACATCGTCGATGTCGGCGGCGAGTCCACCAGGCCCGGCGCGGCGCGGGTCTCGCTCGACGA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49913-50074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000001.1 Streptosporangium saharense strain CECT 8840 Ga0436955_01, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 49913 32 96.9 34 .............................A.. ATCATCAGCCTGATCACGCCGGTCATCCAGTGGC 49979 32 100.0 32 ................................ CAGCAGCGCCAGGCGCGCCCGTTGCTGCTCAG 50043 32 96.9 0 ............................T... | ========== ====== ====== ====== ================================ ================================== ================== 3 32 97.9 34 GTCGCTCATCACCCTGAAGGGTTCGCAACCAG # Left flank : GGACACCGGCATCTTCGACGCCTGATTGCTTACTCGTGAGGCTCCAGTGCTGGTGTGGCGCCGGAGTCTTGTGCGTACTGGGGACTGCTCGCACAGTGAGGATCAGGAATCCTCAGACGAAGGCAAGGAGCAACCATGTCCCCCGACCTGACAGGCACCACGTTCCACAAGTCCTCCCTCAGCAGCGCTGAAGGAGGTAACTGTGTTGAGGTGGCCACCAACCTCCCTGGCCTGGTCGCCGTCCGCGACAACAAGAACCTTTCCGGCCCGGCGCTCACTTTCAGCACTTCTGGGTGGGACACCTTCGTAGACAGCGTGGAACTCGGAACGTTCGACTTCTGACGGCTGAGCCCGTCATCATGGACAGAGCTTCGTGCGCCGGGCCGTACCCAAAAATGATCAACGCCCTGACCTGCACCTCTGCACGACCGCCGGACTGCTGCAAAATCAGCCCCTCTCACCCTCGCCCGGCCCTACCTGACCTGGGACTTTACCCTCGG # Right flank : GACACAAGGAAGCTCCGGTTACCCGGTTTCTTGCAGGGGTGTCCGGCCTGGGGTTTCGGTGGGGCGTCACCCGTTGGGTGGCGCCCCGGTTGGTTCACCAGGTTTTGCCGGCCTGTTCGCGGATCGTGTGGTTGATTCGGTTGAAGAAGTTGGTCAGGGCGATCTCCATGGTGATCGCGTTCAGTTGTTCGCCGGTGAAGTGGTTGGCGGCGGTGTTCCAGATCTCGTCGGTCACGCCGGGGGCGCCGTCCTGGATCCGGGTGGCGGCCTCGGCCAGTGCAAGCGCGGCCCGTTCCTCGTCGGTGAAGAAGGGCGTCTCGCGCCACGCGACGACGTTGTGCAGTCGCTCGTCGGTCTCACCGGCCTTCTTCGCCGAGGTGATCGAGGCGAAGACGCACGCGCTGCACCCGTTGATCTGGCTGACACGCAGGTGGACCAGCGACAGCAGACGCCCTTCGACACCTCCGGCGTGAATGACCTTGTACAGCCGTGCGATCCCC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCTGAAGGGTTCGCAACCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 466519-466670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000001.1 Streptosporangium saharense strain CECT 8840 Ga0436955_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 466519 30 96.7 31 .............................C CGAACAGACCGACACCGATCCTTCGGTTTCT 466580 30 100.0 31 .............................. TGCGGCAGGGAGCCGGGGCGACCGTGCTCGG 466641 30 70.0 0 ..............G.CA......ACGGTG | ========== ====== ====== ====== ============================== =============================== ================== 3 30 88.9 32 GTGCTCCCCGCGCACGTGGGGATGGTCCCA # Left flank : ACACCCCATCTCCCACCCCCCACCCCCTCCCCCAAACCCCCAGCTCAACCCCCTCCAAACCCCGTCCTTCTCCCGGCCCAAAACCATCCCCGCGTGCGAGGGGAGTACGTCATCGAGGTGGCGCAGGTCATCCAGGCGCTGGGACCATCCCCGCGTGCGCGGGGAGTACCCTCGCCGACCTGCGGGTTTATCGACGGGAAGGGCCGGAATTCATCACTTCCGTTGAGTTGGACATTTCGGGCACTTGGCCTGCTAGTCGAAAGACGAGGGGATTGGTGGCCGTTGGCTTTGGTGAGGATGTCCTGGTCGCAACTTTCGAGGTCTATGTCTGGTTTTCCTGTTCCGGGGTGGAGGTGTACTGGGGGCATTCTCTATCGCGTCGCACGCTAGCCTGTGGCTGACGTTCTCCCGACGAACTTTTCGATGCGCCCGAAATGTCCGAGTCGATGAAAGTAATAAATTTCCGCCTCCTCCGCCGATAAACCCGCAGGTCGCCGAGG # Right flank : GGGGCTGATCGCTGGAGCGAGCAGAAGGCTTGGCTTTGAGGCCATACGGTGGTTCGGCGCGATCCGTCGTTCGGTGCGGGTTCAGCCCCAGTCGTTCTGTACGGCCTCGCCCTCGGTCACTCGCCGGGCAGGTGCCAGGTGCTCAGGGAACTCTTGACCGTGAAGGAGTCCAGTTTTCTTGTGGTGGCGGTTCCGGGATCAACCGTGCGTTTCACGAACGAGACGAATGCGCCGTCTCTCTTGTTGCCCCGGCCCGTCCAGAGCGTCAGTGTACTGTCCGTGTCCCAGTAGAGGCGCTGCGGTTCTTCCCCTTTGGGAACGCTGAACAGAACCGCTTTCGAGAGGGTGTCCGTCGCCATGTCGTAGGTGCGCAGTCGGGGCTTGGCCGGAATCATCTTGTCGAGTAACGCGACGGTGGTCGCGTTGTCCGCCAATGCGACCTGTGCGGTGTCGAACACGGCCAGCGGCACACTTCGGCTCGTGCCCCTTCCCCCGTTCGC # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGTGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 876290-876641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000001.1 Streptosporangium saharense strain CECT 8840 Ga0436955_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 876290 29 100.0 35 ............................. ACGATCCCTTGGATGATTTCGATCATTTCGTCAGG 876354 29 100.0 37 ............................. CCCGGCCACACCGACCGGAAGATGCGGTGACCGTCCT 876420 29 100.0 34 ............................. AGGTCGGCCATACACGCGGCCTGCGCCGCGCTGA 876483 29 100.0 35 ............................. CGGGCTTGTGGCGGCGCCCCTTGGGGGCGGGCAGC 876547 29 100.0 37 ............................. TCGATCTCACTTCCCCGGTAGCCCAGGTCGTCCCCGA 876613 29 89.7 0 ................G........TG.. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.3 36 GTCGCTCATCACCCTGAAGGGTTCGCAAC # Left flank : CGAACGCGGGGAGCGCCCGCCCCCGGAGCCACCACCGGCGTGGGAACACAAGGTGTGGCGAGACCCGGTCGTCGTCGCGGCGCTGCCATGCCGGTACTGCCTCGGCGCCCGAACCGTGTCGCACATCGACGAGAAATCCCGACGAATGACCACGGCGGCCTGCCCGGCGTGTGTGGCGTGACCGAACACGGGAGCCACGGCCGAGGAGGAGGTCGCGGCTCGGCCTGCCGTGTGGGGATCTGCGTGAGGGGGTCCGCTGGAGGGGCGCTGACTTCGTGGAAGTGCCGAAGCCTCATGTCGTGTGGAGCAGCGGGCTTTTGAAGGTGATTCTGAGGGCTGGGTTGCGTCTGGAGTCGGGGGAGGGAAAACTTGTGGGCCTGGCCGGATTCCACAAGATGATCAACGCTCTGACCTGCACTTCTGCACTACCGCCGGACCGCTGCAGAAACAGTCCGTCCTCTCCCTGTCTTGCCCTGTCTGACCTGGGACTTTACTCTCGG # Right flank : CTTGGGTGGTTGGGGGGTTGATGAGAGCGTTGATGTCGCTTTGGCGGTAGCGGCGCTGCCCGCTGGGCGTTTTGAGGGAGGGGATCTTCCCGGTGAGGGACCAGCGGTTGACGGTTTTGGGGTCGACGCCGAAGATGTGGGCGACTTCGCCGGGGGTGAGGAGGCGGTCGGTGGTTTCTGGGCCGGTGGTGAAGGTGCCGTCGGGGGTGACGGTCTTGCTCGGGGGCATGGGGGGCTCCTTCAGTAGCGGAGGTTGTGGAGGATCTTGTCGTGGTGGGCGAGTGCCCTGATCAACCCGTGCAGGGTGGTACGGCCCAGCACGTCGCGGGCCCCGGCCTTTCGCTGGTCGGGGCGCAGCGGGTAGTAGCGGGTGGCCCACCAGCGGGGCAGTCCGGGCAGGTCGCGTTGTTCGTAGTACCAGCCGGGGTGGGTGCTGGTGAGCACGTCGATCACACGTCGCTCGTACTCGTCATCGGTCATCGTCGTCTCACTTCGGAGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCTGAAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 3338-3828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000014.1 Streptosporangium saharense strain CECT 8840 Ga0436955_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3338 29 100.0 35 ............................. GCCTGACCCCGGGCGGCAAGACCCTGCTGGGGGAG 3402 29 100.0 39 ............................. AGGCGATGTGAGCGTCCTGTTGAGCGCGGGCCGCCGCAA 3470 29 100.0 37 ............................. TTCTGCCTGATCTCGGCCAGCGCGTTATGTCCTGGTC 3536 29 96.6 37 ................G............ CGATCTCGGCCGCGCGGTACGCGACCTCATGACGCAC 3602 29 100.0 36 ............................. CCTCTTGATGATGTGGCGACCTGCGGCAATGATGGC 3667 29 100.0 36 ............................. ACTGGAGACGGTGCGCTCCGACCTGCCATCCGGGCC 3732 29 96.6 39 ...................A......... CCGATGGCCGCGACGCTGGCGCCGAGCCCGAAGAGCAAG 3800 29 86.2 0 ........................A.CCG | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 97.4 37 GTCGCTCATCACCCTGAAGGGTTCGCAAC # Left flank : CGTCCCACCAGGTCGAGCGTGCCGAGAGCGGCAGGCCATAGGCGAAGCCGACCAGCACGCCGTTCTCTCGCGCTGTGACCGCCTCGAATCCGGCCGACTCGGTCTGCCGGAGAGTTCGCCGCCTGTGATCCTCCAGGTCATAGCCGGGGAACACGACAGCGTAGACCCGCTGGATCTCATCGAAATGCTCCCGGGTGCTCCCGGGGCCGAGACGGCTCATCTCCACCTGGCTCATGGACACATCCTCACCACATCCACCCGCCCGAGAAAAGCAGAGAACCCGGCGTTTTCAAGTGGAACGCCTTTGTGGACGACGCGAAGCTCGGAACATTCGACTTCTCACCCGTGAGCCCGTCATCATGGACAGAGCTCCATACGCCGGGCCGTACCCAAAGATGATCAACACTCTGACCTGCACCTCTGCACGACCGCCGGACTGCTGCAGAACCGGCCCACCCCACCCGCACTTCGCCCTGCCTGACCTGGGGCTTTACCCTCGG # Right flank : GGCCTCTCGGCCGCCGATGACACGACCCCGCCCCCGGCCCAGGACCCGCAGCTTTCGGGGCGTGGGAAAATTTGTGCGAAAAGTTGGGGGAAAGAAGCTCGCATAGTGCTCGAAGCCCTTCAGATCGGGCTAGGGTCTGTTTCCGGGTCTCTCCCCCTGCCTTGATCGTCCGGATGGCACCCCACCCCCGCGAAAGCATCCAACGCCCGTGTGAATCCCGCGGGTGTTCCCACCATCGCCGTGAGTCGTGAGCTTCGCTTCGCGGTGTGCCCATCGGACGGTTCCGGCCATGGCGGAGATCCCCGAACAACCCAGGCGACGCCGAAGGAAGACCGTGAAGGCGGTCCCCAGACGGATGGAGAGACGTTGAGCAAGGCCATCAGAACGGACACGCAGTCGCCCGCACCGCACAACGCCGACAGTCATGACCTGATCCGCGTGCAGGGGGCCCGGGAGAACAACCTCAAGGACGTCAGCGTCGAGATCCCCAAGCGGCGGCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCTGAAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 40541-40327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000014.1 Streptosporangium saharense strain CECT 8840 Ga0436955_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 40540 30 96.7 31 .............................A CCCGAGACCGGCCAGGCGGTAGCGGCCCTCC 40479 30 96.7 31 ........T..................... CCTACAACCCCGGAAAGCGAGCGGCGGCCCC 40418 30 100.0 31 .............................. TGAACTGGGTTGTCCCGGCGTCAGAGGGAAC 40357 30 86.7 0 ............T..............TTG | G [40330] ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AGGCAGTGAGATACGACGAGTTCGGTGGAATCGAGGTGTTGCGGGTCGAGGTCGAAAGGATCGACACCATCGCCGACTTCGCGGCAGCCGCGAGGTACGGGGTCAGGACCGAACCCGGAACCAACGCCAGACCTGGCGCCGAGGTCCTCGCCGAACTGGCCGCCCTGATCGCCGACGGACACCTCGAAGTCCCGATCGCCAACGTCTACCCACTGACGCAGGTCCGCTAGGCCTACACCGAACTCGAACGCCGACACACCCACGGCAAAATCGTCCTCAGACCCTAACCAGCACCATGAACCAGCACGCTCAAGCTTCTGCTCAACCGTAAAATGATCCCGACCGCCGGTGCCAGTCCGCCTCGACAACGGCCGACCTCATACAGCTAGCTTGTGGTTGTCGCCATCCCGGCGAGCTTCGCGATGTGTCCGGAATATCCAAGTCGATGAAAGCAATGATTTTCCGCCCCCTCCACTGACAAACCCGCAGGTCGCCGAGGG # Right flank : CGGGTCGTACGTGGTGTACGACAGCAAAGGGGTGCCCCCATTGCGTGGGAGCACCCTTGCCGGTGTGGGAGAGGGACTCAGCGAGAGTCGTCGGAGGTGGGGCGGGGGGTGCCGGAGGTTATCCAGGTGTATAGGGCTTCGCCGGGGCAGTCGGTTGAGTAGCCGTCTCGGTGGCCCTTGATCTCCTTGCCCGCGCCGCCGTGCTCCCGTAGGTAGTCGATCGCGTCGAGAATGCCGAGCAACAAGTCGTCGGGGGGCTGGGTCAGGCCGGAGGTGCCGACCAGGCCCAGGATGGCGTAGTGGTCGGAGTTGAGACCGGCGCCGTTGGCGGCGGGCAGGTGCCCGGCGCCACGGCCCTGGAAGATCGTGCGGTGCGGGCAGACCACCAGCGAGTAGCCGATGTCGATCCAGCCGTTGCCGTCCATGTGGTGGTCCTGGATCGCCTTGACCGTGGCCACGCACTTGGCGTGCTCCCTGGCCAGGGCGGGATCGACGTGGTC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 54443-55052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000014.1 Streptosporangium saharense strain CECT 8840 Ga0436955_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 54443 29 100.0 37 ............................. CGGGCCGCCCGGTCAGCCCAGGCGCCCCGACCGGCAT 54509 29 100.0 36 ............................. AAGGCCTTGGGCGGAAAGTTCTGGACGTCTTTCTTC 54574 29 100.0 36 ............................. CCTGCCAGTAGATCCTCCTGCCCGGGGACGTACCCG 54639 29 100.0 36 ............................. TCTACGGCCCCTGCGGCGCCCGGTGGGGGAAGGGTG 54704 29 100.0 35 ............................. AACAGCTCCAGCGCGGTTGACGCCATAGGCTCACC 54768 29 100.0 37 ............................. CTCGCTTCCATCCGAGCGATGGCGGCCTCAGTCGCCG 54834 29 100.0 38 ............................. CCCTGGGAACCCTCTCCGACTCCCCGTCCGTTACTCCT 54901 29 100.0 36 ............................. GCGTCTCCCACAGGCCGGGCGCCACCAACCTGCTGC 54966 29 96.6 29 .........................A... TAGGCCGGGCCGTACGGGACGAAAATGAC 55024 29 69.0 0 ......TG..G.T......A.GA.C.G.. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 96.6 36 GTCGCTCATCACCCTGAAGGGTTCGCAAC # Left flank : AGACCCCTCCGGTCCGGCCCTGGCCTTCACGCCCGCCCAGTGGCGCTCGTTCATCGGCCGCGTGAACACCGGTGCCTTCGACGCCTGATCACTTACCTTCTCGCAACCCCCTGGCGCTGGCACGGGCCGGGGGCTTGCGAGCGCTGAGGGACACTCGCACAGTGTCGTTGCCTCAGGGTGCAGGGCCGCTCCCGAGTACCCCTGGAGCCGAGACGGCTTATCTCCACCTGGCTCATGGACGCACCCTCACCACATCCACCCGCCCGAGAAAAGCAGAGAACCTGACGTCTTCAGACGGAACACCTTTGTGGAGGACGCGAAACTCGGAACATTCGACTCTGATCCGTGAACCCGTCATCATGGACAGAGCTTCGTACGCCGGGCCGTACCCAAAAATGATCAACGCTCTGACCTGCACCTCTGCACTACCGCCGGACTGCCGCAGAACCAGTCCGCCCCACCCGCATTTCGCCCTACCTGACCTGGGACTTTACCCTCGG # Right flank : CCGGTGGGCTCGCCTATTTGTTCGCTTATTTGGCTGTTGTCAGTTCGGCGAGGTGGCGTGGGGGTGGTGACCGTTTGGTTGCCAGGGGGTGGTTTTTGTGGGGTTTCGGGCTTGGTGGTGGGTTTGAGGTTGGAACGGGGTGGATGGTGGTGAGTGGGGTGGGGTTGGCTGGGAGTTGGGTTTGGGGCTGGCGGTTTTTATCGCGTGACGTCCCTTAAAAAGGTTAAAGTCGCATCCTGATCCCTCCGGCGAAAGGATGTATTCGTGGCATTACCGTTCGGTGGCGGCAAATCCGGCACAAGCGGCCATCTCAGCAAAATTGCGCCCACCCCTCCGGTGGAGCTTCTGTTCGAGATCGCGACCCGTGCTCGCCTCGCGGCCTCCCCCCTCACCACCGACCTCGGACCCGACGACGGCCTCCCCATCGAGGAAGCCATCGCGATCGTGTTGTCCCCGGCGCCCGTGACGCCGCTGCTGTCGGACCCGGAGCTGGCCATCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCTGAAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 116981-117315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000014.1 Streptosporangium saharense strain CECT 8840 Ga0436955_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 116981 30 83.3 31 ACCA.........................G CGTACAACGCGGCCACTGACATCCTCAACCG 117042 30 100.0 31 .............................. GAACGGCTGCCGACACTGCGGCCTACCCCAA 117103 30 96.7 31 ............................T. GCCTCACGAGTGATCGCGGTCGACAGGAAGC 117164 30 96.7 31 .............................G CGGCTTGGCGGCACGCCTGGGTGCAGTAGCG 117225 30 100.0 31 .............................. ACGTCGAAGACGCGATCATGGACCGCATGCC 117286 30 80.0 0 ............TG..........A..TTT | ========== ====== ====== ====== ============================== =============================== ================== 6 30 92.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GGTCTCCCGCCCCAGGGCGGCGTTCTTGCCCGCGACGAACTGCACGACACGACCGAAGCCGCGCTCCCTCAGCCGCCGCAACACCGTCGCCCGCTCGGCCAGCAGCGCGAAGTGCCGGACATCGTGACCGTCCTCCCGTAACCGGCCGACGATCTCCCTGAAGTACTCGGGCTCCACGACCGTCATCGGCACGATCACCGGCCCGTCATGCTTACCGAGAACCAGCTCAAGCACCTCGCGGACCCCACGCCGCCAGGCGGGCAGGTCCTGGAAGTCCCCGCGCAGCTCCGGCGGCATCATCCGGTGCAGGCCGAACCCGACATGCTCCGGATCACAGACCACACTCCCCGGCAACCGCCGCCGAAGCTCATAAGCCGTCTGCGTCTTCCCGCCCCCAAAAGGCCCATTAACCCAAACCAACATCCCCCGACCCTACGAGCCCATCCCCGCATGCGCGGGGAGCACGTTGGGCTTTGGGCACCGCAAGTGGGGTGTTTGGG # Right flank : TCCTCCCGAGACCGGAGCACGTGGTCAAGGAGTTGATGGGTTGAGGATTACGTTGATGTCGCTTTGGCGGTAGCGGCGTTGGCCGCTGGGGGTTTTGAGGGAGGGGATCTTGCCGGTGAGGGACCAGCGGTTGACGGTTTTGGGGTCGACGCCGAAGATGTGGGCGACTTCGCCGGGGGTGAGGAGGCGGTCGGTGGTTTCGGGTCCGGTGGTGAAGGTGCCGTCGGGGGTGACGGCCTTGCGGGTGGCCTTGAGGGTAGGCATGGGGGGCTCCTTCAGTAGCGGAGGTTGTGGAGGATCTTGTCGTGGTGGGCGAGTGCCCTGATCAATCCGTGCAGGGTGGTACGGCCGAGCACGTCGCGGGCTCCGGCTTTGCGCTGGTCGGGGCGCAGGGGGTAGTAGCGGGTGGCCCACCAGCGGGGTAGGCCGGGTAGGTCGCGTTGTTGGTAGTGCCAGCCGGGGTGGGTGCTGGTGAGCACGTCGATCACGCGTCGTTCGTA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58545-58318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000017.1 Streptosporangium saharense strain CECT 8840 Ga0436955_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 58544 29 96.6 40 ..................A.......... CGGCTGCGGCGATCGACGCGGACAAGCCCCCTTTGGTCTT 58475 29 100.0 35 ............................. ACGCAGTCGCGGTAGATCTCCAGGGCGCGCCGGTT 58411 29 100.0 36 ............................. GTGACCACGAGCTGTTGCGACGCCAGGTCGGTCCAC 58346 29 89.7 0 .......................T..G.T | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 96.6 37 GTCACTCATCACCCTGAAGGGTTCGCAAC # Left flank : CAGATCGGCCCTGGGCTTCACGCCCACCCAGCGGCGTTCTCCCGTGAGCCCCTGGCGCTGGCACGGGGTCGGGGCCTGTGCGCGCTGAGGGAACTTGCACGATGAGGGTCAGGAACCCTCAGACGAAGGCGAGGAACCCATGCGCCCGACCTGGCCGGCGCCGAGTTCCACAAGTTCAGCCTCAGCGGCGGCGGTGAGAACTGCGTTGAGGTCGCCACCAACCTCCCCAGCCTGGTGGCCATCCGCGACAGTAAGGACCCTTCCGGCCCGGCGCTCACTTTCAGCACTTCTGGATGGGACACCTTCGCGGACGGTGTGAAATTCAGAATGTTCGACTTCTGACCCGTGAGCCCGTCATCATGGACAGAGCTTCTTGCGCCGAGCCGTACCCAAAGATGATCAACGTTCTGACCTGCACCTTTGCGCTACCGCCGGACTACTGCAAAAACAGCACGTCCCGCTCCCACGCAGCCCTACCTGACCTGGGACTTTACCCTCGG # Right flank : GTGCTCTGCCGTACAAAGCGAAGAAGGGGTTAGGGGGTGGTCCAGTGGGGGGCGTTCCATTGGGTGGCTTGGGTGGTGGATTGGGTGAAATGAAGGGTGGCTTCTTGGGGGCGGTTTAGGAAGAGGGCGAGGGTGCCCAGGGTGTGGGCTACTGGGCGGAGGGCTACTGACAGGCTGGTGGCGCCTGCTGGGGGGCCGTCGCGGTGGGGGAGCAGCGCCGTGTAGATCTCCTCGGCGGCGGCGCGGTCCTCCAGGGCGATGGCGGCCATCGCGCGGACGGTCATGAGGAAGGTGAAGAAGTAGTCGGGCCGGATCGGGTCCGAGGTGCGCACCCGGTGGGCTTCGGCGGTCAGGCCGTTGGCGTGCAGGGCGAGGACCAGCAGGTCGGAGACGAGCGGGCCGAACGCCTCGTGGAGGGCGCGTACCTCGTCGAGGTGGTCGCCGAGCGTGCCGTTGTTCAACCAGATCGAGGTCAGCGCGAGGCCGAGGAAGCCGGGGTG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCATCACCCTGAAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 559-334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000020.1 Streptosporangium saharense strain CECT 8840 Ga0436955_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 558 29 100.0 35 ............................. GACCAGCCCTGCATCACGGTGGCGTGTGCCTGCTG 494 29 100.0 37 ............................. AGGTGCATGGATTGTCCGTCACGAAGCCGGAAATCGT 428 29 100.0 37 ............................. ACGAGTGCGGGTACTCCTGCCACCCGGGGCGGCTGGG 362 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 GTTGCGAACCCTTCAGGGTGATGAGCGAC # Left flank : GCACTTCTCGTACGGCACGCAGCCCGATGCCCGTCCTGCGCGCGCCGCGCACGACGAAGAAGCCACTCAGCACCCGGACAGGACCGCCCAGCCCACGGACGGTGGCGAGGCCGACGGGGTGCTCGCCGTACGTCACCAGGTAGGGCGCCCTGTCAGGGTCGGTGAACGCCGCGTGCAGCCGGTCACTCCTGAAGGTCCCGTCCGCGTTGGGCAGCCTTCCCTGGAACCCCGACATGTCATGACAGAACATCAACCAGAGCCGCTCCGCGACCGGCCGATCAGCCTCTCCGGCAAGCCGTACACGCACCTCTGACATGGAACCCCCAGCGTTTCCGGACACGAAAAAAGCCTCCTCACCGGACAGAAGTCCGAACCGAGGAGGCTCAACCTTTCTCAGGAAATATATCAACATTTCCCGGGTCGCTACGGGGTTGTCGCCCTGACTGTGCGGGTGACGAGGGACCGGCCGAGAGAGCGGGCAGGGCAGCCGCCAGCATCGG # Right flank : CCGAGGGTAAAGTCCCAGGTCAGGTAGGGCGAAATGCGGGTGGGGCGGACTGGTTCTGCAGTAGTCCGGCGGTAGTGCAGAGGTGCAGGTCAGAGCGTTGATCATCTTTGGGTACGGCCCGGCGCACGAACCTCTGTCCATGATGACGGGCTCATCGGTCAGAAGTCGAACCCTCCGAGCTTCGCGCCGTCCACGAAGGTGTCCCACCCGATGTCGCTGTCGTGGGTGACGGCTGTGCCGGGGTGCTGTTGGTTCAGAGTGGGGTTGGGCCGGTGGAGTCCCATCGGGTGAGGGCTGGTTGGTGGCCGAGTTGGGTGCCGGTGTGGGGGTCGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTTCAGGGTGATGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1315-1527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000016.1 Streptosporangium saharense strain CECT 8840 Ga0436955_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1315 30 83.3 31 A.CA........TG................ CCAGGGCAACGCCAACGAGGAAGTGCGGATC 1376 30 96.7 31 ..............A............... TCAGCGCGGGCGTGCTCTCTCCGGGGCTCGT 1437 30 100.0 31 .............................. CGCGCGACGGCCTGTCAACCGTGTGCGTCCA 1498 30 90.0 0 ..............G...........T..A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 92.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCGATGACGAGTACGAGCGACGCGTGATCGACGTGCTCACCAGCACCCACCCCGGCTGGTACTACGAACAACGCGACCTGCCCGGCCTGCCCCGCTGGTGGGCCACCCGCTACTACCCGCTCCGCCCCGACCAGCGAAAGGCCGGAGCCAGGGACGTGCTGGGCCGTACCACCCTGCACGGATTGGTCAGGGCCCTGGCCCGCCACGACAAGATCCTCCACGACCTCCGCTACTGAAGGAGCCCCCCATGCCCGCGAGCAAGGCCGTCACCCCGGACGGCACCTTCACCACCGGACCCGAAACCACCGACCGGCTCCTCACCCCCGGCGAGGTCGCGCACATCTTCGGCGTCGATCCCAAGACCGTGAACCGGTGGTCCCTCACCGGGAAGATCCCCTCGCTGAAGACCCCCAGCGGCCACCGCCGCTACCGCCAAAGCGACATCAACACCCTCCTCAACCCTTCGACTTCTTGACCACGTGTTCCGGTCTCGGGGGAAG # Right flank : ACATCAGGAATCGTCCTCATGTCCTTCCAGGAGTGGTTTCCCGCGCACTCGGGGAGCACGGACAGGACCTCGGGGGCCGGGGCTGGGGCCATCTCTTCAGGGTGATGAGTGATGAGACCTGTCGGAAGACGACCCCATGGCGGCCAAGCCCGGGCGTTGCGAACCCTTCGGGGTGACGAGTGGCCCGAGGGTAAATCCCCAGGTCAGGCCGGGTGCCATGGGAACGGGACGAGCTGGTTTTGCAGCGGTCCGGCGAGGGCGCGGAAGTGCGGGTCAGAGCGTCGATCATCTTAGGGGTTCGGTCGGGTCCACCGATCCTTCCGTGGACGCACGCTTTCCTGTCAGGTTCTCCAAAGGAGAGGGGAAGCGCGAGCACGTCCACAGGCGGGGTTGGGTGACCTCGCGTCGGCCCCAGCGGGTGGAAGCGGCCGGGTCGCCGGGCCGTACCGGAAGGGGGGCGTGTTGGTCCGCGCGGGCGGGCGGGAGCGTGGGCGCCGGTT # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11729-12283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000016.1 Streptosporangium saharense strain CECT 8840 Ga0436955_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 11729 29 86.2 35 A......G....T............T... CAGGATCGGCACCTGACCGCATTCACCCGGTGCGC 11793 29 100.0 39 ............................. GACAGTCCGTCGGCGTCCGCCTGACCCTGAGTACGTGGT 11861 29 100.0 37 ............................. CGGATCTCGCCATCATGGACATCGGTGGTGAGGCCCC 11927 29 100.0 36 ............................. AGGTAGGTCCATCATGACCGAAAAGCGGGAGTGGAG 11992 29 100.0 35 ............................. TCCGCCTACGACCGGGTATGGCTCGGATCCACCGA 12056 29 100.0 37 ............................. CCGAACGTGAAGCCGCCCTCGATCACCTGGCCCGCCA 12122 29 100.0 36 ............................. CGAGGGAACCCCCGAAATCCTCACCCTCGCCACCCC 12187 29 100.0 39 ............................. CGGAAGCACCTGGCACCGAGAGACCGTCCTCGAACTGCT 12255 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 98.5 37 GTTGCGAACCCTCCAGGGTGATGAGCGAC # Left flank : GGCCACGCGCGGCGCCGGTGACGGCTGGACCCGAATCATCCCGGCCGGTCTGCTGGTGCTGCTGTCGGGAGCCTTCCTGCTCAACGCGCTGTCCTTCGGCTACGCCAGGCACGACGACTTCCCGCTGCCGCTGATGATCCTCGACGCCTGCTGGCCGCTCGGTCAGCTCGGCATGCTGGTCCTGGGCATCGCCATCGCGGTCCGAGGCCGGAGCCAGGGCGCGAACCGCTGGCTGCCCCTCCTCGCCGGAGTGTGGTTCCCGGTGACCATGGTGGCCCAGATCTTCGGCGGCTCCACGGCCTCGGTGTACGTCAGCGCGGCCTGGCTACTCGCCACCCACGCCCACCTAGGCCTCCGCCTCGCCCTCCACCCCACCCCCTCAACCCGCTGACCCTGGGACGCTTCCCTCCACAACCACCCAGCGAAAGCCCTGGTCCGTGGCCCCCTCCCCACAGGACCAGGGCAAACACGACGCCACTGATGACAGCGCTCAATCTCGC # Right flank : CCGAGGGTAAAGGCCCAGGTCGGAGCCGGTGCCGTGAAGGCGGTACGCGCTGTTTTTGCAGCGGTCCGGCGGTAGTGCGGAGGTGCAGGTCAGAGCGTTGATCATCTTTAAGTCTGACCGGATCCTATAACGCTCTCCTTCTCCTGGTCAGTTCCAGGAGTCCAGGGAGATGTCCGGGCCGCCTGCCAGGTAGCGGTGCAGGGCGCTGGCCGTGGTGGAGACGAAGTCGCGCGGTAGTTCTGTGGTGGGGGTCCAGCGCACCTGGGCGTGTTTGTCCGGCTCGCCGTTGGTCAGGGTGCCCGACCATTCGTGTACGGCGAAGACGACCGTCAGGAACCCGTTGGGCGCTTCGACGCCCCGTGCGCCGTGGATGATGTGGGCCAGGCGCAGTGATTCGGGCTGGACGCTCAGGCCGGTCTCTTCCTTGAGTTCCCGGATGGCGGTGTGGGTGATGGGCTCTCCCGGCTCGCTTTTGCCGACGGGCAGGTCCCACATGCCCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCCAGGGTGATGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 3 70802-70575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000016.1 Streptosporangium saharense strain CECT 8840 Ga0436955_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 70801 29 100.0 36 ............................. GTGTATCCGGTGGCTTCGGGCATGTCCGTCCTCCCT 70736 29 100.0 38 ............................. GCCCACACAACGGCGGCGTCTTGGCCGAACGCCTGCCA 70669 29 96.6 37 ......T...................... CTTGTAAGGCGTTGAGGGCTGGGCAATGTAGCCACCT 70603 29 89.7 0 .......G................A..G. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 96.6 37 GTCGCTCATCACCCTGAAGGGTTCGCAAC # Left flank : CTTACCGGGAACGCGCCGGAGTGCTCCCCGACTACCCGGCCGTCCAAGCGGTGGCCGCCGCGACCATCGCCACCCACTGCGCAACCACCACCGCGACCACCACACGCCAAGCCCTGTGGCAGACCGCCGCCAACCTGGAGACCACCACCCTGTTCGGCGCCTTCAAGATCGACCCCCACACCGGCACCCAACTCGGCCACCAACCAGCCCTCACCCGATGGGACTCCACCGGCCCAACCCCACTCTGAACCAACAGCACCCCCGCACAGCCGTCACCCGCGACAACGACATCGGGTGGGACACCTTCGCGAACGGCGCGAAACTCAGAACGTTCGACTTCCGACCCGTGAACCCGTCATCATGGACAGAGCTTCATACGCCAGGCCGTACCAAAAATGATCAACGCTCTGACCTGCACCTCTGCACTACCGCCGGACTACTGCAGAACCAGTCCGTCTCCCCCTCATCCGGCCCTACCTGACCTGAGACTTTACCCTCGG # Right flank : TCAGGCTGTTGATCATGGGTTGGTGAGAGCGCGCAAGTCGCTCAGTCTGTTGAAGTGACCGAATACGTCGTGGCCAGTGACCGGGTGGAGACCGTACACGTCCTGCACCGCGACGAGTCCGCCCAGCACCAACGGTGACGACGAGAGCGAGCAGCCATGACCCTCACCGCCCACGCCGCCGCCCGAACCCACATCGGCCATGTCCGCCGCCGCAACGAGGACGCCGCCTACGCGGGAAGCCACCTGTTCGCCGACGCCGTGCCGAACCTGCCCGCCCGCATCTCCCGCTTCCTCGACGGCCGCCCCGAGGGACGCTCCCCAGACCTGACCGCAGGCCGTACCAGCAAAGAATCTCTCCAACCCAACCCTGGCGTTCATCCGTTGGCGGCATCAGACACCGGACACGCGTCGCGATGAGATTCCGTGCGATACCGGGGGCCGCTTCCGAAGTGGCCGCGAGCCGTACGGCCCGCACCTGACGGGAACCTCCCGGGAACCGG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCTGAAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 409735-410156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000003.1 Streptosporangium saharense strain CECT 8840 Ga0436955_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 409735 29 100.0 37 ............................. TCGTGTTCCCTCCCGGCGTGACGCACATGGCGTCCGG 409801 29 100.0 36 ............................. CCACGACACGGTCGCTGACCCGTGGCCGAAGCTCGT 409866 29 100.0 36 ............................. TCCGGCGCTTGATGGCGATACTGACGCTGGTACTGC 409931 29 100.0 36 ............................. CCAACACCTGGTAGGCGCCGTTGGCCGTCTTGATCC 409996 29 100.0 36 ............................. ATCGAAGAAATCCAAGCGGACGGTGTCGATCCCGCG 410061 29 100.0 38 ............................. GTCGAAGTATCGCGGGGCGGCCGCTACCTGCCGGTTCC 410128 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 100.0 37 GTTGCGAACCCTTCAGGGTGATGAGCGAC # Left flank : CAGAGGGCATCAGGATCGACAGGATGCCGATCTCCCCGTCAGAACTGTTCGACCTGCGCCGCGCGGCCTCCTCCGGATGAACGAACGCCATCGGGCGGGGGCGAAGGCAGAGGTCCTTGCCGCCGTGGACGGCGATCGTGCCGGGGATCGTCGGTTCAGAGTGGGTTTGCGGCGTGCCGGATCTCCGGGCCGAGCCGGGCCTGACGGCCGAAGACCCGCCGTGACTTCCACACCGTGGAGATCGCCCGGGGCTTCCATCCCAAGAAGGAACCGCTGGCCACGATCCACCTGTTGAACCGGGCCTACGAGATCAGCCCGGACACGGTCTCCTACAACCTGTTCACCCGCAGGACCACCGACGAGCTGATGACCACGGGCGGCGCCACCGTACGAGACGAGGCACGCACTCTCGCCCGGAAGATCAAACTGGTTCCCGCAGCCTGAATCCCGAGGGGGAGGATGCCTCCCTCTCGACGTGAGGGAGGCAGCCTCCCTTGGGT # Right flank : CCCGAGGGTAAAGCCCCTGGTCAGGTAGGGCGAAATGCGGGTGGGGCGGACTGTTTTTGCAGCAGTCCGGCGGTAGTGCAGAGGTGCAGGTCAGGGCGTTGATCATTTTTTGGTACGGCTCGGCGTATGAAGCTCTGTCCATGATGACGGGCTCGTGGGGCAGAAGTCGAATGTTCCGAGTTTCGTGTCCTCCACGAAGGTGTTCCGTCTGAAGGCGCCGGGTTCTCTGCTTTCTCGGGCGGGTGGATGTGTCCATGAGCCAGGTGGAGATGAGCCGTCTCGGCCCCGGGGGCACTCGGGAGCATTTCGATGAGATTCAGCGGGTCTACGCTGTCGTGTTTCCGGGTTATGACCTGGAGGATCACCGGCGGCGGACTCTCCGGCAGACCGAGTCGGCCGGATTCGAGGCGGTCACAGTGCGGGAGAACGGTGTGCTGGTCGGCTTCGCCTATGGTCTGCCGCTCTCGGCACGCTCGACCTGGTGGGACGGGCTTCGGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTTCAGGGTGATGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 361626-361852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000004.1 Streptosporangium saharense strain CECT 8840 Ga0436955_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 361626 29 100.0 40 ............................. ACCGGCCGGTGTTCCCGGAGGGAGCGGCCTTCCCCGGCCT 361695 29 100.0 35 ............................. TCGCGCACCTGCTTGGACACGGGCAGGCCGGTGAG 361759 29 100.0 36 ............................. AGCCCCAGGGCGCGGGCGATGGCGCCCAGGGTGCGG 361824 29 96.6 0 ...........T................. | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 99.2 37 GTCGCTCATCACCCTGGAGGAATCGCAAC # Left flank : CACCACCGTCTTCCACCGGAAGTTACGCAGGAAGGTTTCGTACGAGGAACTCATCCACCTGAAAGCCCTCAAGCTCGTACGGCTCTGCCTGGAGGGCCTCACCTACAAGCCGTTCCGGCCCTGGTGGTGACGGTGTTCGTCATCGTCGTCTACGACACCCTCGCCGAGCGCAATCCCGGCGTCATCAAGGTCTGCCGCCAGTATCTGCACTGGGTGCAGCGGAGCGTCTTCCAGGGAGAACTCTCCACCGCCCAACACCGAAAATTCGTGAACGCCATCAACGCCAGAATCGACCCGAGCTACGACAGCGTCCTCATCTACCGGACCCAGGGCCCCCACACCATCCAGCTCGACCAGCTCGGCCAAACACTGGGCAACACCAACCCGGTCCTGTGACCACACCCCTTCTGACCTGGCCCTCTGCACTACCGCCGGACCGCTGCAGAATCTCCCCTTCGAACACTCCCCAACCCGCCCCTTACCTGCGGCTTTACCCTCGG # Right flank : CTCATCCTGGAGGGACCCCAGACGGGCGGTCAGGAAGGTTTCGGCGTGGTGCCAGGGGAGTGGTGGGCTCGGGCCAGGCTTGCGAAGTCGCGGGGGTAGGCCCGGGGGTCGAAGCCGGTGAACACGCCGATTTTCTCCGCCCACGCCAGCACCTGGCGCCACTGTTCGATCGATGCCGGTCCGATGGACTCCACCCCGTGGGAGAACAGCAGCAGTCTGATCTTGGAGAAGGAGTCGGAACGGTCGAGACAGTTGATCAGGCTCGCGCGGGAGGGTCGGTGTTGAAGACCATCCAGTACGGCACGGAGCCGCTGCGCAGCGTCCACCACGGTTCGAGGAACAGGAAGCATTCGGCGAGCAGCCGGTCGGCGGGCGGGTCACGGCGTTGATACCAGTCGCGGTAGAGGTCGGCGACCACGGGGCTGAGGTCCTCCGGCTCCGTGAAGCGCATGCGCGGCAGACGCCATCCGTTGCGGGCGGCCAGTTCCCTCAGGCCAGGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCTGGAGGAATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 642590-642095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000004.1 Streptosporangium saharense strain CECT 8840 Ga0436955_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 642589 30 100.0 34 .............................. GGGCGACGGTCAGCCGGTCAAGGACGGCGTAGGC 642525 30 100.0 37 .............................. TGTTCAGGTCGTCGGCCCCGGGCATAAGGGAGCGCAA 642458 30 100.0 36 .............................. GGCGGTTCAGGAGGTTGGCCGACGTCTGTTGGGCAA 642392 30 100.0 41 .............................. TGGCCTGCTGCTTGCGGCGGGCTCGCCACGCGGTCACCCGG 642321 30 93.3 35 ..................A.....A..... CAGGCCGTACGTCCAGGACGGTCTTGGGACTGTCC 642256 30 100.0 36 .............................. TGCGGCGGCTCATGCCCTCTCCCCCCGCACGGCCAG 642190 30 100.0 36 .............................. GGGCGCCCTGGGCGAGGACGGCGTCCTGTACTGGAC 642124 30 93.3 0 ..........G.................G. | ========== ====== ====== ====== ============================== ========================================= ================== 8 30 98.3 37 GTCGCTCATCACCCTGAAGGGTTCGCAACG # Left flank : TATCCCTGACGGCAGACGCCGAGTGATCCGTGAATGGCAGGAGGTGCCCCGGCGCGTGGCCGAAGGCAGCTTCACGGACGCGAAAATCATCGACGGAGCCTGGCACTGAACAGAGAACAATGAGCCACCCCGGTATCGGTTCTCCTCTGGAACTTCGCTGACCAAACGAAGGCGCCTCGCGATGTCCCAGCCCTCGCACAAGGCCTTATCTGACTGATCGTCACGGTGACGGATGAGGGCCAGGACATGACCCGAATCCTGCCTGAGGACGGAGCCCGCATCTTGGCCCTGTCGGAGACACCATGACGCGGTGCTCACGAACGCATTCACCCCCCTGGCTTCACCTTCGGGAAACTGATAGGAAAGCGTCGTTGGACACGACCGCCCTCCCAAAGACGATCAACGCTCTGACCTGCGCTTCTGCACTACCGCCGGACTGCTGCAAAAACAGGGCCTCCTGCTCTCACAGCGGTAGGCCCGACCTGGGGCTTTACCCTCGG # Right flank : TAAGGATGTCGAGCCGTCCCACGAGCCATCGAACAAGGACCGCAAGGGTCAAGGAGCGAGGGTGATGGTGGTGGGGATGCCTTGGCGGGTCATTTTGGCGTAGGGGCAGAGGGCCGTGGCCTGGGATAGGAGGGGGGCGGCCTGGGCGTGGTCGACTTCGGGCCAGGTTATGACGAGGTCGGCGTGGAGTTGGTAGCCGCCGTCGGCGGGGTCGCGGCCGAAGGCGACGGTCGCCTTGACCGTGATCGGCTCCGGGTCGAGGCGGTGTTGACGGGCCAACAGGCTGAGGGCGCCGTGGAAGCAGGCGGCGTACCCGGCGGCGAAGAGTTGCTCGGGATTCGGGCCCGTGGTGTCGCCGCCCAGTTCCTCGGGCATGCGCAGCTCCAGGTCAAGGGAGCCGTCGGCGGAACGGGCCCTGCCGGTGGCCCGGCCGTGGGCGGAGCTGCCGCCGCTCACCTCGACGCTCGTGACGTAGAGCGGTTTGAACGCGGAGCCGCTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCTGAAGGGTTCGCAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 8621-8954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000008.1 Streptosporangium saharense strain CECT 8840 Ga0436955_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8621 29 100.0 32 ............................. GTGGCGCGGCGGCCAAGCGGCGTCAAGCCGGA 8682 29 100.0 32 ............................. CCCAACAGGCGATCACGATCATCCATCTCAAG 8743 29 100.0 32 ............................. ACCGCCTTAAAGTTATCGGCGCTCCACTCGTA 8804 29 93.1 32 .............AC.............. GAGACCGCGAAGTCACTCGCGGGCCGGTAGGG 8865 29 86.2 32 ...T.........AC.............G ACGACTACGTGACCCTGCTGCACGCCGACGCC 8926 29 89.7 0 .............AC.............T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GCCGCCCGGTCGGGCGGTCGCCCGTCAGAATCCGGAACCGCCCGGGGTCTTTGAGGATCAACTCTTCCAGTACGGCGCTGCGGGCCTGTGCGGCGGATGTTCCCAGCGCGTCGCTGGAAGGGGTCATGGTCTGGGTGGTGCTCATGAGATCTCCCGGTAGGTAGGTCGCGCCGTCGAGATGACACGAGCCCCCTGGTCCAGGAACGCGAAAGGGCCGTTCATCCGAACGGCCCGGTCATGCGTGAGAGTGCCGCTCCTACGAGGAGCGCCACCAGCTCAGACATGACGAAAAGTACATGTCCCCATCATAGCTGGCGGCCTGTCGTGCTCCGGGGGCCTGTGGCGGTGGGTCTGGTCTGGAGGTGTGCCGGGGGATGTCGTCGGGGCTAGCCTGTGATCGATGTCGTTTTTGCGATCCAGCCGGTGCGCCCGAAATGTCCAACTCAACGAAAGTAATGAATTTCGGCCCCCTCCGCCGACAAACCCGCAGGTCGGCGAGG # Right flank : TTCCATACGGTCTTGTGCGACCAGCGCGACCGGGTGCTCTCTGCGCATATGGGGGTGTGTGACATGTGATGTCTATCCCTATAGTGCGGGGGCGCGCTGCCGTACCCCACCCTAAAAGTCAGACCCGTGCGGAATGCGGTGGGCCGTCAACCGTTGGGAAGTGGGCCAGTGGACGTGGGTGGCCCAGCCTGCCTGTTCGAACCAGTGGATGAGGCGGGCGCTTGGGTCGAGTTGGCCCTTGAGGACGCCGTGGCGGGCGCAGGTGGGTTCGGCGTGGTGCCAGTTGTGCCAGCCCTCGCCGAACGTCAGCATCGCCACCCAGCGGACGTTCGACGAGCGGTCCCTCGTCGCGAACGGGCGGTCGCCGAAGGTGTGGGAGATGGAGTTCACCGACCACGTGACGTGGTGCACCACGGCGTAGCGGACCAAACCGCCCCAGAACAGCGCGCTCAGCGCTCCCTGCCATGACATCGACCACAGGCCGCCGACGGCCGTGGGCA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123249-123403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJP010000008.1 Streptosporangium saharense strain CECT 8840 Ga0436955_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 123249 24 100.0 41 ........................ CCAGAAATGATGGCCGACCCCGGGCCGACATCGCGCGTTGC 123314 24 100.0 42 ........................ GCGTCGGCTGGCAGCGCTGTAGCTAAGCCCTGATCATGTTGC 123380 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 100.0 42 GAACCCTTCAGGGTGATGAGCGAC # Left flank : TGTTCAACAGGGGGAACCTCACCGCGGGCAGTGCGCGATGGCCAGCCCGACCGGACGCTCTCCTGAGGAACGCCTCCCGTGTCCTCACGCACAGGACCCCGCGGCCGTGTGTCAGCGCCAGGGCCTTGCGAAAGGTGAGCGGTTAGGTGTCGAAGGCGCCGGTCTGGTCACTACGGTGATCGGGCCGCGCACCTTCATCTTGGGGTCGGCGTGGTAGCGGTACCGCCGCTGACTAAGTCGGTCAGGCAGCTCGGCCAGTCCTCCCAGGAGACTACGGGTCTGTCGATCGTGGTCCCGGCCGAATCGTTGACCTAGCCGAGCCTCGCCCGCGATGCCCCTCCAGCGGCGGCTGGTCAATCCAGCCCACCGCACGGGTCACCGCAGGGCCTCGACCATCGAGGCGCGGAAGTGGCAACGATGACCCCGGCCCAACTTCGCCATTCTGAGGTACGGCCCGCAGCTCGCGGTGTGTGTTTGCGACCCCCGTGGGCTGGAGTCGT # Right flank : CCCGAGGGTAAAGTCCCAGGTCAAGTAGGGCCGGACGGGGGGTGGGGCGGACTGATTCTGCGGCGGCCCGGCGGTTGTGCAGAGGTGCAGGTCAGAGCGTTGATCATCTTTGGGTACGGCTCGGCGTATGAAGCTCTGTCCATGATGACGGGCTCGTGGGGCAGAAGTCGAATGTTCCGAGCTTCGCATCATCCGTAAAGGTGTCCTGTCTGAAGACGTCGGGTTCTCTTCTTTTCTCGGGCGGGTGGGTGTGGTGAGGATGTGTCCCTGAGCCAGGTGGAGATGAGCCGTCTCGGCCCCGGGGGCACTCGGGAGCATTTCGATGAGATTCAGCGGGTCTACGCTGTCGTGTTCCCCGGCTACGACCTGGAGGATCACAGGCGGCGGACTTTCCGGCAGATCGAGTCGGCCGGATTCGAGGCGGTCACAGTGCGGGAGAACGGTGTGCTGGTTGGCTTCGCCTACGGTCTGCCGCTCTCGGCACGCTCGACCTGGTGGGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACCCTTCAGGGTGATGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //