Array 1 35165-35462 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000011.1 Sinosporangium siamense strain NBRC 109515 sequence11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 35165 31 100.0 37 ............................... CCAGACGTGCGAGATCTCCGGCGATGTCATCGCTTGC 35233 31 100.0 35 ............................... CAGACGCACACGCGGAGCTCGACCGCGGCTGGCAG 35299 31 100.0 37 ............................... TCGACCCACCGCCGGTAGTCGTCCCGGGCCTGCTCCT 35367 31 100.0 34 ............................... CCCATATCGAGCGGGACGAGTAGGTGGTCGGCGA 35432 31 90.3 0 ..........A....C.T............. | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 98.1 36 GTCCTCATCCGTCCCTACGAGGGGTCGCAAC # Left flank : GACGCCGGTGCCCGCTTAGGAAGTTCGACAGGGCAGGTGCCGGATGAGAGAAGGCCTTGATGGGCTGGGCGGATTGATCGTTTAGGTGTAGAGGAGTCGGCTGTTGGGTGAGTAGGTGGTTGACCGCACGCTCGAGGTGTTGCGCGCTTGCGGTGCACAGCCTTGTGCTTTGGGCAGCTGGAAGCCGTGCTGGCTCGCAAGCCCCGGATGCCGTCCGACCTGGAGGCCAGGTTGTTGCAGGGGTCGGCGTTGCCGATCGACTTCCTCCTGCACGACGGGGTGCGGCATGCGCGGCGACGAGGCTTCCGGGACGCGTTCGAGCGCGCTCGGCGATAGGCTTCCCGGGATTTTGTACGGCAGAAGCCTGGTGGACATGTCGTGACATGATGGGCCTGGTTTGCAGCGAACCCCCCGGGGCTCGTGCACTACCGGAGGTTTGCTGCAAAACGGGCCACCCAAGCGGCCGGGTTTCGCGGGCTGACGTGGGGCTTTACCTTGGG # Right flank : CCAGAGATGGGTTGGTTGGCCTTTTAGCCGGTATGTGGGCCCGGCTTGTTCGGCTGACGTGGGTTGCCGCCGTACTCGCTCGGTGGGCTTGCCTGGTGTGTTGGGGTGGCGTGTGACTGTTGGCCTGTGTGTTCAAGCGGTCGGCGGGGGCGATTGTTTGACTGGTGGGTCTGATGGGTCCATGCCGGGGAGGATGTCCACGCCTGCACATGGTTGGCGAGGAAAGAAGTATCCCCGCCATTCCCAAGTCAGGTGGGCAGAGAGGCGAGCCAGCCGGTCAGGAGTTCGTTGACCTCGTCGCGCCGTTCCTGTTGGATCCAGTGGCCGCAGCCGTCGAGTATGTGCGAGGAGACCAGGCCCGGCAGAGTGGCGGGGTATGCCTTGATGGCGTCGGCCATCCAGGTGGTCGATGCGTCCAGCGCGCCTCCGATGAACAGCGACGGCTGCTTGATGGGGGAACCATCGAAGTCGGCGAGGTCCTCCCAGTCCCGGTCCATGTT # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCCGTCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 19370-19195 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000013.1 Sinosporangium siamense strain NBRC 109515 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 19369 30 100.0 37 .............................. GACGCGCCTGGAGTTGTGAGTGCGTATATACCGGCAA 19302 30 100.0 48 .............................. GGATATGCAGCTTGGAGGACCTCGGCGCAAGAAGGCGTCCTCATGCGC 19224 30 70.0 0 CCTACG.GTT.................... | ========== ====== ====== ====== ============================== ================================================ ================== 3 30 90.0 43 GTCCTCATGCGCCCTACGAGGGGTCGAAAC # Left flank : ACCACCTGGAAGACCTCCACAAGAGAGGCACCGCCGCCGCCGTGGTGGTGCCCATCGGCTTCATCTCCGACCACATGGAGGTCGTCTACGACCTCGACGTCGAGGCCCGCGACGTGGCCGACCGCCTCGGCCTCCCCATGGAACGCGCCGCCACCGCCGGCACCCACCCGGCCTTCACCCAGATGATCGCCAACCTCCTCACCGAACCCGAACCCACCCCCTGCCCCTTGACCTGCTGCCCCACCCCCCGCCGCCGCCCGACCTGACCCACACTTCCCGGGCGCAGGGCAGACTCTCCCCCCTCCGAGAGCTCCGCCCCCGACATCGAACACAACCACCCGCGCGGCATCCAGGAACGCGGCACCGGTTGTGCCGCCCGCACGCTTCCGCCATGCTTTGCAGCAGCCCCCCAGGGCTTGGTTCACTACCGGAGGTTTTGCTGCGGAACCTGGCCACCGCAGCCTTGGCAACCACCTCCGGACCAGCGCCTTTACCTTGGG # Right flank : TCGTCGCACTGCTCGTACGTCAGCGTTTCACCGTGTCCTCCCCCTTACGAGGGGTCTCGACGTTTCGAGCTCCAACGCCACCGAGGCACCCATACCCGCCCTCATTCCCCTATGAGGGGCCGCAGCAGCTCCACGCTGAGGCCGGAGTAGTCCAGCAGGCACTCATCACTTCATGTAAGGGATCTCACCACGCCTGCTGTGTCCGCCAAGGCCCCACCGGTGCCACGAGCACAGCAAACGCGACCACCTGCCCCGAACCCCTCTTTAACCAGGCCGAAGTGTGCCTCCCCGCTCAGTAGGCCGCCTCGTAGCCCCGGGCGACGCCGAGGACCTTGTCTACGTAAGCCCATGAGTGGTTGTAGAACCACAGCGCCTTGCGCAGCTTCTGGGCACCCTGGTTGGCGCCGTTCGCACACAGGTAGTTGGCCGCCGAAGGAACCGCGTCGTACGGGCTCCAGATGTCGGCCTTGCCGTCACCATCGCCGTCCACCCCGTATGCC # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATGCGCCCTACGAGGGGTCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 316094-316669 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000020.1 Sinosporangium siamense strain NBRC 109515 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 316094 29 93.1 32 ..T.........G................ GGAGCGCTCTAAAAAGGGGGGGCCTCCCTCAG 316155 29 93.1 32 ............G...............C CAGGTCGCGACGTCGGGCACCTCGGTGGCTGC 316216 29 93.1 32 ............G...............G GAGATCGCGCGCCGCGTCTCCCACCCCGTCCA 316277 29 96.6 32 .............A............... GGCGGCTACTGGGCATGCATGGGCGGCATCCG 316338 29 96.6 32 ............................G CCCATCGACGCGCTCAGAGACACCGCCGCCGT 316399 27 93.1 32 ............--............... CACACGGTTATGGAAGGTGACGGCGACGTCCG 316458 29 100.0 32 ............................. GCAGTCATGTAGATGTAGGCGCGGCCGTGTAC 316519 29 79.3 32 ...A.T....G..A.T............C ATCGCAGCGGCGGCGAGGTCGCCGTCCAGGGC 316580 29 93.1 32 ................A.......A.... GAGTAGGTGCGGCAGTAAGGGCAGGCTGGCGG 316641 29 86.2 0 ..............T.........A..GC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 92.4 32 GTCGGCCCCGCACGCGCGGGGATGTTCCT # Left flank : GTCCGGGCGGTTCGCGGCGGCGGGCGCACTCCTGACCTACGCCGCCCTCACCGGCTCCGCCCGTCACCGCGAAGCCGCCCACGCCGCCCTCGGCACCGCCTCCGTCCTGGCCCCCCGCCACGCCCGCTTCGCCGGCTGGGGCCTCGCCGTCGCCGAAGCCGCCCTAGCCGGCCCGGTCGAGGTCGCGGTGGTGGGGCCTTTGGACTCCCTCGACACTCGTGCCCTTCACAGGACCGCGCTCCTGTCGCGCTCTCCTGGCCTTGTGGTGGCGCTCCACGACCCGGCGGAGGAGCCTGGGACTGGCAACAGCCTGGTTCCTCTCCTGGAGGGACGAGAACTCGTCCGAGGACGACCTGCGGCTTACGTGTGCCGCGACTTCACGTGCCGCATGCCGGTCACAACCGCAGCCGACTTGGCCACAGAACTTGGGGGCACACAACTCCATAAAACCACCGAATGAAAACAGGGCTATGGCTCCGCAACAGCGCAGGTAGGCGAGT # Right flank : CCCACCATGCCCCGGGAGATCAGGGAAGCCCGGCCCGTCACCTCCACCGAGGTAGAGGTGACGCACACCTGCCCAACCGTGCAAGCAGGGCCCGAGAGCCCGACCCGCCTACCGGGTGTCGCGCTGGACGGGGATGTTCTGGACCGGTCCCTCGTCCTGGCCCCCGCCGAGGCGGCGTTCGTTGCCCTGGTTGTCGCCTGGTCCCGGGCCTTGGCCTGGGCCGCCGGGGTTCTCGCCATCCGGTTGGCCGTCGGGGTTGTCCGGGCCACGTGGGTTGTTGGGGTTGGCGGGTGTGTCGGGGCCGGTTGTCGGGGGTGAGGTGCCGGGAGGGGTGGCGTTCTGGTCGGGGGCGGGGTTGATGCCCTGGTCGCCGTTCGGGTCACCGTACCAATCGTCGCCCTCGGGGTAGTTGTCGTCGGGGAAGTCCCAGCCGAAGTCGGAGGCTTCGGGGAACTGTTCGACGGGTTTGCCCTTCATGGCCTCGGTCATGAAGGCTCGCC # Questionable array : NO Score: 3.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGTTCCT # Alternate repeat : GTCGGCCCCGCAGGCGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 412584-413219 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000020.1 Sinosporangium siamense strain NBRC 109515 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 412584 29 100.0 32 ............................. TCCACCGCCACCTTCAACACCGCCGCATCCTT 412645 29 96.6 32 ............................G TCATGACGTGCTGGGTCCTCACCCACACCACG 412706 29 96.6 32 ............................G GCACGTCTCTTCCCGCAGCTCTCGAATAGCGG 412767 29 100.0 32 ............................. ACGCCGTAATGCCGCTCCCCCGCATCCTCACC 412828 29 89.7 23 ................A..T....T.... CGCAGCAGCGCTGGCAGCGCCAG Deletion [412880] 412880 29 75.9 32 ...A....T..G..G....CA...T.... GGGCTGGCCCCAAAGTGATGCGCACGCTGCAC 412941 28 72.4 39 .......G..TT......A..-..T..TT GTTCCGGCGCGCAGCCTGTAGGCCGCCCCTGATCTGGGG 413008 29 86.2 92 ...........G..T.........T...T GAAGAGGAGATCCGCGACCAGGCGAGCGCGGAGTTAGCCCGCAAACGCGGGATGTTTCTTGGACGACGTTGCGGCATCGCGACGTCGATGAT 413129 28 93.1 33 ..............T.........-.... TGCGTAGATCGTCGCCGCGACCGGCTTGTGCAG 413190 29 86.2 0 A...........TG...........A... | C [413213] ========== ====== ====== ====== ============================= ============================================================================================ ================== 10 29 89.7 39 GTCGGCCCCGCACACGCGGGGATGCTCCC # Left flank : CATGTCAAGTTTTCTATACCTCCCCCAACGCTCCCACGCACTCTACGGCCCCAAGAACGCCCACCCAACGCCGGCCACACACCACCCCAACCAGGGGCGCACGGTCACCAACCACAACCAACAGACAACCAACGCCGCGCGCACAGCAACCATGGCCAACATCACCGCCACCACACCAACCAAGACCACAGACAACAGCCCCAACGAACACAGCAACCCCCACACCAACCAAGACCACGCACATCGCAACCACCTTGGCGCCCGCCACCCCAAGGACACTGACCACCACCAACATCGCGGCCACCGAACTGACCAGACCACGAACACCAGCCACAATGAACACAGCACCAGCCAGAAACACACACGCCGACCGCAGCCGATATGGTGACCGCTTCCCAGAACCGACCGGCATAGCAACAAGCACCCGCGCGGACCGACCCTCCACTGAGCAACCGAATGAAAACAGGTCAGCGGCTCCACAAAGGTGCAGGTGAACAAGT # Right flank : CTGGGGCGCTCCACTGTGACCTCCAGGGGCTGGCCCCGCACTCGCGGGGCCGGGCCATGCTCGCCCGTCACGAATCGAAACCGTGCTGAGGTCAGGCCCGTTGGGCGTGGGCGAGCGCCGAAGGTGTTTGGCAGCCGACGATCGCCGGCGCCTCGTGGATCAGTTCGTCGTTGACGAGTGCTTCCACCATGAACAGTGCGTAGTCCACTCGCCGGGTGCGGTTGCTCTTCAGGATCGGGTCGCCGACGTGGCGGCTCCACACCGGCAGCCCCTCGCTCTCGCCCTCCTCCAGGTCGCTACCGCGCACGACGGTCCAGCGGGTGTCGCTGGCGAACACGCGACGACATGCCTCCACCTGGTCGTTGAGGTCTATCACACGAGCGAGCCGGGCAAGCCAGCCGACGACCTTGGCCATGATCAGGACCTTGAGTCCGTATACGTCCTGTTCGTCGCGCTTGATGTGCCACCCGCACGAGAAGATCAGCCGTGCTCCCTTGGGC # Questionable array : NO Score: 4.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.60, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 236047-235614 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000030.1 Sinosporangium siamense strain NBRC 109515 sequence30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 236046 32 100.0 35 ................................ TGGTAGTCGTTGTCGCCGTCGGTGAGCATCTCGGC 235979 32 100.0 34 ................................ TGCCTCGCGTCCTACACCTCCGGGAAGTTGTACG 235913 32 100.0 35 ................................ CGGTAGCCAGCGCGGTATCTCGTGACGTCCTTGAA 235846 32 100.0 36 ................................ CTGACATAGCGCCTCACGCACCAGCTCAATCAGAAC 235778 32 96.9 34 C............................... AACTACGTCGTTCCGACGGCGTGGCGCCTTTCCG 235712 32 96.9 35 .................G.............. ATAACGCGTGACATGGTGTACATGCCGATGATCAC 235645 32 81.2 0 CACA........C............G...... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 96.4 35 GGTCCTCATCCATCCCTACGAGGGGTCGCAAC # Left flank : CGGCTACCCGCAGCCTCAGCCCGTCTACGCCGGCCCCCAGCCGGCCCCCATCGCCCCTCCCGGCCCCGGGCCCGGCCCCGGTCCCACCACGACGACGCTCGCGGAGGCGGTCAAGTCCGCTCATAAGGAGGGTTACGACTTCGGGGAGTCGGTGGCGAGGGACGCGCCTCCCCTGTGGCTGGAGGCGGTGCTGGCCCGCAAGCCCCGGATGCCGTCCGACCTTGAGGCCCGGTTGTTGCAGGGGTCGGCGTTGCCGATCGACTTCCTCCTGCACGACGAGGTGCGTCATGCGCTGCGGCGAGGCTTCTGGGACGCGTTCGAGCGCGCTCGGCGGTAGGCTTCCCAGGATTTTGTACGGCAGAGGCCTGGTGGGCATGTCGTGACATGATGGGCCTGGTTTGCAGCGAACCCCTTGGGGTTTGTGCACTACCGGAGGTTTGCTGCAAAACGGGCCACCCAGGCGGCCGGGGTTCGCGGGCTGACGTGGGACTTTACCTTGG # Right flank : CCCGCCCCGGTGCTGTTGTCCTCCGAGAGCACGGAGCCCCTTATCCCCCTCCGAGGGACAAACCCAGCCCCCCATAGGCCTCACCTAGGCCACAAAACAACCCAACTCCACCCGCTCCCAGGAAGTTCACAGCGATCATTCACCTGACGGCGAGAGAATGGGTGAATGCTGGAGCACGTTGTCAACCACCTGGTCTGCCCCGTGTGCGGACAGGGGTTGACACTCGGAAGCGGAACGGTGACGTGTGGGAAGGGGCACGGCTTCGATGTGGCGCGTCAGGGATACGTCAGTCTGCTCACCGGATCACGCCCCCCAGGAACAGCGGACACGCCCCAAATGGTGGCGGCGCGTGATGAGTTCCTTGGAGCGGGCCACTTCACGCCTCTCGCCGAGACACTCGCCGAGGTGTCCGCCGGACTGGTGACGGAGAAGCCCGGCGTCGTGCTGGACGCGGGAGCCGGCACTGGCTACTACTTGGCCAAGGTGCTCGATTCCCTTCC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCCATCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 88373-88142 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000029.1 Sinosporangium siamense strain NBRC 109515 sequence29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 88372 31 100.0 36 ............................... AGTAGGGCGGGTTGTGCCAGCGGTGGTCGCCGACGC 88305 31 100.0 37 ............................... CCGCCTTGACCAGTTCCGCCGTCCCTTCCAGGATCGC 88237 31 96.8 34 .......................G....... CGACGATCAGTTCAGCGCCACGGGTCCGCGTCGG 88172 31 87.1 0 C........G.G..................T | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 96.0 36 GTCCTCATCACCCCTCCGAGGGGTCGCAACC # Left flank : ACCGCGGTCACCACGACCGGCGCCGTCGCCCTCGGCTTCACCCCGACAGCCCTCCTCCCCGGCGACCCGGCCGACCTGGTCGTACTCGACACCTCGTCCGCTCGCGCCCAGCCGGTCCACAGCCCGTACGCCTTTGTCGGCTGGGTAGCCACAGCGGCCGACGTCCGCGACGTCTATGTCGCCGGCCGTGCTTTGCTCCTGGACGGCGAACTGCGCACCCTTGACGAGGAACGCATCCTCTTCGAAACCCGCCGCATCGTCACCCGCCTCGGCCTCCCCGAACCGTCCCTCTCCTAACAATGGGTGGTACGAGCCGAACGGCTCGCGTGGGAAGCCACCGGATCCGAGCCCGGAGGTATCCTGTGACCCCGCTCCTCGACCAAACCGTAGCGACAGATTTCAGCGACACACCGGGCTCAGTTGCACTATCGGAGGTCTGCTGAAATTCAGGCTGGAAACGCATCGATCCCACCGCCTAGGAGCAGCGGCTTTACCCTGGG # Right flank : TGCTGGCCGGGGCGAGTGAATGCAGTACGCGTAGGTCTCCGTCACCCCGGAGATCCTCGTCCTCTGCCATGGCAGGCCGATCGCCGACCTGGACGATGTGCGCCCCATCCAGCGGAAGACCTCCGGGTCGCGGGCTTCTTCGGCGCCTCGTTCATGGAGTGTCTCCCCGCCGAGCGCGCCATCGCCGACCCTGAAGGACCCCGACGAAGGAACGCCCCATGCACCGCATGCCGAGGCGCCACGCCGCAGGCACTACAGCCGGGTGTTCCCGCTCGGGGGACTTCGGTCACACCGGCTCAAGCGCCGTCAAGCGGTAGTGAGCGGAGGGCGTTGGCGGTGAAGTCGTCGAGGGGATAGAAGAGTTCGATCGCCAGCTCCGACAGTGTGACGTCGGCTGGGGCGCCGAAGGTGGCCATGGTGCTGAACATCGCCAGTTCGCCGTATGGGGTGCGGATTCTCAAGGGCACCTGGATGGGGCTCGGCCGGTGGAGTGAGGCTCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTCCGAGGGGTCGCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 95128-94907 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000029.1 Sinosporangium siamense strain NBRC 109515 sequence29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 95127 27 100.0 38 ........................... TCGTAGTAGACCCAGCCAAAGACGGGGGCGATCGCGTT 95062 27 100.0 38 ........................... GCGGTCTCGGGACGCGCGCCCCGCTCGCCCTTCAGGTC 94997 26 96.3 39 ......-.................... ATGGGCATGTTGGTCGTGATGTGCTCGACGATGACGGTC 94932 26 96.3 0 ..............-............ | ========== ====== ====== ====== =========================== ======================================= ================== 4 27 98.2 39 CTCATCACCCTTCCGAGGGGTCGCAAC # Left flank : TCACCACGACCGGCGCCACCGCACTCGGCTTCACCCCAACGTCCCTCCTCCCCGGCGACCCGGCCGACCTGGTCGTCCTCGACACCTCGTCCGCCCGCGCCCAACCGGTCCACAGCCCTTACGCCTTCGTCGGCTGGGTCGCCACAGCCGCCGACGTCCGCGACGTCTACGTCGCCGGCCGCCCTCTCCTGGCCGACGGTGAACTATGCACCCTTGACGAGGAACGCATCCTCTTCGAAACCCGCCGCATCGCCACCCGCCTCGGCCTCCCCGAACCGTCCCTCTCCTAGCAACGGGTGGCACGAGCCGAACGGCTCGCATGGGAAGCCACCACCGAATCTGAGCCCAGAAAGTATCCTGTGACCCCGATCCGCGACCAAACCATAGCGACAGATTTCAGCGACACACTGGGCTCAGCTGCACTACCGGAGGTCTGCTGAAATTCAAGCTGGAAACACATCGATCCCACCGCCTAGGAGCCGTGGCTTTACGCTGGGGTT # Right flank : GTCACGTCTGCTTCCAGCAACGGACCTAGGCGGGCGTCCTCATCGCCCCTCTCCTAGACGCGTGATGAGACCTGTGATCAAGGCTCCCGCTTTCGTACCTGGTGGAGCGGCATAGAGAGGCAGCAAAACGAACGGTTACCGCAGGTGGCGTGAGTGCGGGCATTTGGAACGCGTGGTGGAGACCGCCGGGAGCGTTGAGCAGTTCGAAGACGAGGTTCGTCGGCTATGCGATGAGAGTCAGGATTGGAAACTGGCAGACGAGCATGGGTTGTCCGGAGTGCCTTCGGAGGGTGATCGAGGGTAGGGCGTCCCCTGCGGATCTTCGCGACCTATACCCCCGGCGGCGCCGGAGGCGGCCAGGAATTGTTTGTTGGGGAGGGCGAAGCCCAGCCGTTCGGGAGGGAACGCCACAGAAGATCGGAGAACGCCCCTGAGTGTTGCCCTCCACACGAAGAGGCGCGGGGGTTCGGTAGGGCGCATGCCTGCCGGGTACCGGTCGC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATCACCCTTCCGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 143812-144021 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000034.1 Sinosporangium siamense strain NBRC 109515 sequence34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 143812 28 100.0 33 ............................ TGACAGCTCGTGGCGGGACTCCCGCTCCACGGC 143873 28 100.0 33 ............................ CTCCAGCTCCGCAGCCTCCAGCTCCGCGCGCTT 143934 28 96.4 32 ........................C... TGGCGAGGCGGATCTTGCCGTCAGGCGTTCAC 143994 27 75.0 0 ..........GC.T..T....G.-T... | A [144014] ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.8 33 GTCGGCCCCGCACACGCGGGGATGGTCC # Left flank : CTGGGCCGCCAGGTCTTCGCCGTCCTCGGCCAGCACGTCCCCGCCGACGTCGACCCGGCCGCCGTGACCGCCGACCTGGCCGCCATCAAGGGCGTCCGCGACGTCCACGACCTCCACCTGTGGACCCTGACCTCCGGCATGAACGTCGCCACCGCCCACCTGGTCATCGGCGACCCCGCAGACAACCACGCCACCCTCGACCAGGCCCGCCACCTACTCCAACAACGCCACGGCGTCGCCCACGCGACCCTCCAGGTGGAACCGGCGGAACATAAGGGGTGCGACGAACTCGGCTGGTGACTTGGCCGACCTCGCTTATGCCGTACGGAGCACCCCGCAACCTTGCCCTTGTGGACCGACCCGCCGAACCGTACTTGGCCCCTCTGGTCGGGCCCTACCATCAGCTTGTGAGGACTCGCCGGATCAGCCGACCCCGCGAATCCGTCACGCAACTAAATGAAAACAGGTCCCCAGCCCCGCAACACCGCAGGTGAACGAGT # Right flank : CGCGGCCGGGCTTCAGACGGTGCGTCGTGCAGGAGCCGGCCTCCGCATGCGCGGGATTCCTTCCGGCGCCTGTTACGTTGGCAGGGTGCGCACCAGGTGGGTCCAGGCATCCGTCAGTTGGCGGGGGCCGTAGCAGCGGTTGCGTTTGGTTAGGGCTTCCTTCTCGGGGGACCAGGTGTAGGGGATGCCGGTCGAGGCGGCGGCGAGTTGGGTGCGGCACGCCTTATCGAGGAAGAGGGCGGTCATCACGGCGGTGGCGACGTCGGATCCCACGGTGACCAGGCCGTGGTGGTGGAGTAGCACCGCGTTGCGGTCGCCGAGGGTGGCGGCCAGCCGTTCGCCCAGGTAGCGGTTGTGGATGAGGTCGCCGGTTTCGGTGAATCGGGCGATGTCGGGTGGCCAGAACAGGGTGCCCTCGTGACCGAGTGGGAGTAGCGGCAGGCCGGTCGCGGCGAAGGCCACGGCCGCTTCGGCGTGAGTGTGCACGACGGCGCCGACGT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-1609 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000042.1 Sinosporangium siamense strain NBRC 109515 sequence42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. CAGCGCACCTGGCGCTGCTACAAGATGCTGCC 68 29 100.0 32 ............................. TCCCGGCCCATTGCGCACGGGCCGGGACTCCA 129 29 96.6 32 ............................C TCCCCGCGCCACCGCTCGCCCCGGTCATCCCC 190 29 100.0 32 ............................. GAGCCTCGGCGGCGATCTCGGCGCCGGCCATA 251 29 100.0 32 ............................. AGGGACGCCGACAACGACGCCACCTTCATTCC 312 29 100.0 32 ............................. GTGTTCCAGATGCTGGAGCAGGCGCACCGCGA 373 29 96.6 32 .........C................... CGCCACGTGCAGCGGGCGTACTCGGCGTCGTG 434 29 100.0 32 ............................. GTGACGTCCATCAAGGGCGACACCCACGCCAA 495 29 96.6 32 ............................T CTCACACGCGAGATCGAGGTCTTGGACAAGAT 556 29 96.6 32 ...........................T. GCCACCGCGTGCAGGTGATGGACTTCGCCAAC 617 29 100.0 32 ............................. CCAGACGTTAACCCCGCAAACCGATATGACAC 678 29 100.0 32 ............................. CTCGCCAACGCGGGCATGCCGCTGGCTCAGCG 739 29 100.0 32 ............................. GGCGTCGTGTCCGCGACCGGCGTTGCCGGGTC 800 29 100.0 32 ............................. ATGCGGTTCGGTGGAGGGGACGTCGATAAGCC 861 29 100.0 32 ............................. CAGATCATGAACCTGAGCTCGGGCCAACAGAC 922 29 96.6 32 .............G............... TTCGCCGACGCCGAGGACGCCCGGCTACGCCT 983 29 96.6 21 ............................A GCGATCCGTCCCCGCGCGCTG Deletion [1033] 1033 29 79.3 32 CG.AG..AA.................... AGGCGGAAGCCAGTCAGACCTACGCGTTGTTG 1094 29 100.0 32 ............................. CTTTACCGCATCACGCACGTTGCCACCGACTA 1155 29 100.0 32 ............................. CTTCCCGGCAACGCGCTACCTCTCTCCGCGGC 1216 29 100.0 32 ............................. CCGCGGCCCGGATCCAGTCCGCTGCGGCGAGG 1277 29 100.0 31 ............................. ATGCAGGTTCCTCCCGCGCTCGCGCTGATCA 1337 29 100.0 32 ............................. CGCACGCGGCCCCCGATCATGTTCGGATCAAA 1398 29 93.1 32 .............TT.............. TCATCGGGTACCGAGCTATGGAACAGGTCGGC 1459 29 100.0 32 ............................. AGGAGTGCGGCGCTCGTGGTGGCCAGGTCGGA 1520 29 100.0 32 ............................. TACGCGAGGGCCTCCATCCCGGTGCGTGCTCT 1581 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.1 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : AACCCCG # Right flank : ACCCCGATTCCACCGCGGGCATTGTCGACGACACGTGAAAAAAACTGGCTCTGGATCACTTTCCGTGCCAGGGCCACTGAGCGTCACCAGAACCGCGATCATGAACGGTCGTGGCTGACGATCTTCTCCATGACCTCTGGCTCCACCACATCGACGATGTCGCGCTCGACACCGTCACCACCACCGACAACCGCCTGACCATCCGCGCCACGACCACCAGCGCTCAGGCGGCCTGCCCCAGATGCGGGACCGTCTCAGCCCGGCTGCACAGTCACTACGTGCGCCGACTCGACGACCATGCCGTGAGCGGGCGGCGCGTCGTGATCGAGTTACGGGTGCGCCGGTTCCGCTGCGGCGAACCTCCCTGTTCACAGGCCACGTTCGTCGAGCAGATCGCAGGGCTGACGTTCCGGCACGGACGGCGCAGCGAGCATCTGCAAGCCTCACTGCGGCAGGTCGCGCTGATGCCGGCCGGCCGGGCCGGCTCCCGCCTTACCGAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32516-33023 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000035.1 Sinosporangium siamense strain NBRC 109515 sequence35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32516 28 100.0 33 ............................ TACCACGGTTGGTGATGCACGGAACCGCGTAGC 32577 28 96.4 33 ....A....................... GTCACTGCGCCTACGGCGCACACACTGACTAGT 32638 28 100.0 33 ............................ CGGTGGGGTCCGCTCGATGTAGCAGTGGCGGCA 32699 28 96.4 33 .......T.................... TTTCGGGCCGGGATCGATCCAGCTCACCGTGGG 32760 28 100.0 33 ............................ CGTGCTAACGCGGGTGGAGCCTCTCTCGCGGGC 32821 28 89.3 33 ............GT...........C.. CCGGTCGTGATAGACGCGGTCGAGTTCCTGCAC 32882 28 96.4 33 ........................C... GTTCGCGCACCAGGGCGTACCAATCGGCCAGCC 32943 28 96.4 25 ........................C... GGACAGCCCCGAGCCCGCGCAGCCC Deletion [32996] 32996 28 85.7 0 A..A.......G............C... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.6 32 GTCGGCCCCGCACACGCGGGGATGGTCC # Left flank : GTGGAGGCCAGATCGCTCACCTGGGCGACATGGCCGCTGACACGCTTGACGTCCTCGGTGATGGCGTCGACCGTGACGAGCCTGCGGTTGGTCTCGGTGACCGTGGCGCTCACGTCGTCGAGCAGAGGCGCGACCCGCTCGCTCATCTCCGACACCATCTTGGTGGTCTCGTTGATCAGCCGGGCGAGTTTGACGAGCACCATGGCCAGAAAGCAGACCAGGATCGCCCAAAACATGGCGACCACCAGGCCCGCGACCTCTCCCGCGGTTAGCATCTGCGGATCCGTCCCCTCGGCACGTGAATGGGGAAGACCTTATCGTGCCCCAGCCAACTTCCCCGCCACCACGCGCCCCACCAGCCCCAGCTCCGAAGGCCCTGGGATGTCGGCCGACATTCGGCCCTTATGATCAGTTTGATCAACGGAGGCGGCCCACCGACCTCCGCTGACCAACCGAACGAAAACAGGGCAGCAGTTCCACAAATGCGCAGGTAAACAAGT # Right flank : CGTACACCCGCAGCTCGGACCTCGAACTACACGGACCTCACCGACCCCCGCGAAGGAAGTCCCGAATCCTGGCCCAGCGGTCGGCTACCGGGGCTTCGGCGCCGTGGCGGGTGGGTTCGTAGTAGCGGCGGCCCCTGACCTCCTCGGGGGCGTAGTCCTGGCGGACCAGGCCGTGTTCGGCGTCGTGGGGGTACTTGTACGCCTTGCCGTGGCCCAGGTCGGCGGCGCCGGCGTAGTGGGCGTCGCGCAGGTGTGGGGGCACCTGGCCGATGAGGCCGCGGCGGACGTCGGCGGCAGCCGCGTCGATGGCCTTGATGACGGCGTTGGACTTCGGGGCGAGGGCGCAGTGGATGACCGCCTGGGCGAGGTTGAGGCGGCCCTCGGGCAAGCCGATGAACTCGACGGCGCGGGCGGCGGCGACGGCGACCTGGAGGGCGGTCGGGTCGGCCATGCCGACGTCCTCCGAGGCGAAGATCACAATGCGGCGGGCGATGAACCGG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : GTCGGCCCCGCACACGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109092-108767 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000035.1 Sinosporangium siamense strain NBRC 109515 sequence35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 109091 36 100.0 36 .................................... GGATCCGGCGAGGGTGAAGCGGTGTGTGCCGCCGGT 109019 36 100.0 36 .................................... CTGTGCCGCCGGCCGGAAGTTGGAAGTCCCGCAAAA 108947 36 100.0 37 .................................... CTGAGTGCTTCTGGCGTTGACCACGAACTCTTTGTCC 108874 36 100.0 36 .................................... ACCTCCACCGGCACCACGTAAACACGCGGATCGGGG 108802 36 94.4 0 ..............G....................G | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 98.9 36 CAGCACCGGTCCTCAGGGATCGGTGAGCATCGCAAC # Left flank : CCGCGCGCGGGACCGCGCGGATTCGCCGACCGCGAGATTGTCCGATTGACGGGAGAGAAGGCTTTGACAACCCCCCCGAAGAACCAGTCCTAACCTGTGGCTCCGACTACGGCCCGAACCAGCCCAACGTATTACGGTCCCCTGCAAGGCTAGTCATATCAATGACTAGAAGGACGAATCGAGGTGTTGGGGGATCGTTGAGTGGATCGGATGATGAGGAGTGCGTGATCCTGGTTTAGGCTGAACATTTTCAGTTGTTTGAGAAGAGAACAGCTATCAGTCCCATCGACGTCGTCGAGCCTCTCCAGTTCATCGCGCATATGCAGGCGTTTCTGGCCTGAAGTGCTGTTTTGGGTGTATTGCCGAGTGATCTAGGAACCTCTAGTGCTCATGCGACACGCCAGGCGTTCCGAAGCGTTAATTGGTGCATTGGTGATATTTAGGCTCTCGAGTCTGCGAGTAGGAGTACCCCTCGCAGACGTATTGCCTGCTGGGGAGCC # Right flank : GCGGGAGTGCAGCACCCCCGTCAGCCGCTCCCGGGCCAGTACCAGCCTTCCGAGGGCAATGAGCATCACAATGATCAGGTTGCGTCGGTGACCTCATCGTGTCCGGCAAGGCTGGCGCCGCCCCTCCGAGGGGGTGAACATTGCCACTATGTCTGCACCGCAGCAGATGTCTACTGACGACACTGATCCCGAGTACACGACGTCAGCACCGGGCGTCTTGGACTATCCGGTAAACGTCGAGTGACTCAGCTCGTACGGCCGATGCATCCCGACATCAGTGCCGATCTTCTGGCTGACATGCTCAACGGCAGGTCAGGCGGGCTACATCGACATGAAGAGAAGAGTACGGACAGATGTGTGTCAGGTGGGGCGGCGGGCGAGCACGACGGGCACTCGACTGTACCGTCGTACGACGGTGGCCAGCTCAGGGGCGATAAAGCCGAGGCACTCCAGGACCGCATCATGGTCCGCGCTGAGGTGTCGGTGATGGATCGCTCCAT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCACCGGTCCTCAGGGATCGGTGAGCATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 43021-46536 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000049.1 Sinosporangium siamense strain NBRC 109515 sequence49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 43021 37 100.0 35 ..................................... CATAGAGCGGTCGGATGAAAGGGGCCGCTCCCCTC 43093 37 100.0 35 ..................................... ACCGAGGCGCATCGACATCAGGCCGAGGGCGTATC 43165 37 100.0 36 ..................................... ATCGCGGGTGCGCTCACCGATGGGGCCGCTGCTGGT 43238 37 100.0 34 ..................................... GAGGAGACGATGGCTGCGGGGCGCGAGCAGCCGA 43309 37 100.0 34 ..................................... CCGAACTGGATGACTCGATACTCCTCTGCCCCCT 43380 37 100.0 36 ..................................... CGCGCGGCTCTGCGCCGTCGAGCGGCTTCGTCCGAT 43453 37 100.0 37 ..................................... AAACTTTCCGTGGTCTTTGTCGAGCAACCTTGCCGAC 43527 37 78.4 31 ...........................T.GCAA.GTT GAGGAGCCGCTCGCCGCCGACGTCGAGCGGG 43595 37 100.0 36 ..................................... CTCACGCTCGCCACGTCGAGGCCGGCCGACATGCCC 43668 37 100.0 35 ..................................... CGCCTCGCCTACAGCATCGAGTCCGACATCCTCGA 43740 37 100.0 34 ..................................... TCAAAGAGGTCCTGATCAAGCCCAAAGATGCGGA 43811 37 100.0 35 ..................................... TCGCTCTTGATCGCGGACCGGACCAGCTCTGTCCC 43883 37 100.0 36 ..................................... CTCGGTGGGACCTACACGGCCACGCAGGACGCCGAT 43956 37 100.0 35 ..................................... CTGCGGCGAGCCCGAGCCGCCACCACTCCCCCCGC 44028 37 100.0 35 ..................................... AAATGCATCGCTCGCTTCCGTGCTCGCTTGCACGG 44100 37 100.0 37 ..................................... GGTGCACTGGAAGCGGCTCATCCAGCCGCCCCCGGCA 44174 37 100.0 36 ..................................... TACAGCACCTGGTATCAGCCCGCGGAGTAGCGCACC 44247 37 100.0 35 ..................................... GCCAACAACATCAAAGACCTCGCGAAACGCGGCCT 44319 37 100.0 35 ..................................... TCATCTGTTACCAGGCGTGCTGTCGAGAGCGCATA 44391 37 100.0 35 ..................................... CTCCCCGGAGGCGATGGAGAGCAGCACATCGGCGT 44463 37 100.0 36 ..................................... TGGCTGATTGCGTCGCCCATCCTGCTGGCGGCGGCG 44536 37 100.0 36 ..................................... GCTCAGATGGCCCGTGAGGGCCGTTCGGGGGATGGT 44609 37 100.0 35 ..................................... CGCCGAGCTGTTTGTTGAGGTGAGCTGATGGCCGG 44681 37 100.0 37 ..................................... GACGACGAGCTCGCCACCACCGCGATGCGGGACTACC 44755 37 100.0 34 ..................................... TCCATGACTACCAGTCCTTCCATAAGAGTCAGTT 44826 37 100.0 35 ..................................... CTGCAGCTCGTCACAAAGGCGTGGAGCGGCCTGCG 44898 37 100.0 37 ..................................... GACTCGCTCCAGCCCGCGATCGACCGATTTACGGACC 44972 37 100.0 37 ..................................... CGGGAGAGGACGGCGGCGAGGTCGGCTACGCCGAGGC 45046 37 91.9 35 ............C.TC..................... CGCCACGCTGGGCGAGAACCTGACCGAGGCGATCG 45118 37 91.9 37 ............C.TC..................... CAGCACGGTGCCCGGAGCTGCACCGCCGACGGCGGCG 45192 37 91.9 34 ............C.TC..................... TTGCGGGCAGGTCGGCTCCGGCCGCGGTGGGTGT 45263 37 91.9 35 ............C.TC..................... TCAAGGTGATGGCGGGCCCGACATCGGAGACCCGG 45335 37 91.9 36 ............C.TC..................... GCAAAGACCGCCCCTCTTGCGAACCAGATCATTGCC 45408 37 91.9 36 ............C.TC..................... ACCCCGGTGTCGATGAGACCGACGAGGGCTGCGGCT 45481 37 91.9 37 ............C.TC..................... AGCTGCTGGACGCCGTCGATGAACAGCCAGAAGAAGT 45555 37 91.9 35 ............C.TC..................... AACTCAGGCCACATTCCAGGCAAGGTCTGCCCTCA 45627 37 91.9 36 ............C.TC..................... TTGGTGGAGGTGGAGGTTGCGAATCGGGCAGTGGTC 45700 37 91.9 34 ............C.TC..................... ATGTGGTTTCTCCGTTCCTGCGTGCAGATGCGCC 45771 37 91.9 36 ............C.TC..................... CCTGATGTCATGACCGGCGAGCCGACAGGCCCTCGA 45844 37 91.9 36 ............C.TC..................... CAGCTTGTGGGGTAGTCCCACAGGCGCGGCTCGGGT 45917 37 91.9 34 ............C.TC..................... CGCCAGCCGTCAGGAACCGCTTACCCCCGCCCTT 45988 37 91.9 36 ............C.TC..................... CAGCCCGATCACCAGGGCAATCCGGCTCACGCTCGT 46061 37 100.0 35 ..................................... CCAGCAGGCCCAGCTCTTCAGCGCCCCACCAGGCA 46133 37 100.0 38 ..................................... GCCCGTGCCAACGAATGGATCATGTGCATCCAGTCAGC 46208 37 100.0 36 ..................................... CAGCTGGAGGCCCGCTACCGGCGCAACCGGCACGAG 46281 37 97.3 36 .................T................... GTTGACCCGAAGCTCAAGGAGCTGAGCCAAGCTCGC 46354 37 100.0 36 ..................................... TCCACGGGCAACCTCAGCGTGACCGGGTGGTGCCCG 46427 37 97.3 36 ..............................C...... TGGCCCGGTTGTGGTCTTCTGAGCGGAGATATCCCC 46500 37 70.3 0 ...........TC..C..A........C.C..AAGGT | ========== ====== ====== ====== ===================================== ====================================== ================== 49 37 96.5 36 CCAGCACCGGCCTTCTGCGGCCGGTGAGCATCGCAAC # Left flank : GCTTTCTCGTCCTATTCCCAACACTGGCGAGCCCGATGCCCCACGCGCCAGAGAAGAGGAATGAGGTCGCCGGCCCCGGTCGGTTCGTAGCCTGCCGCTCGGGCATCCCTGGAGCTCTGGACTCGCGATTCCCGAGTCTCCTCATTTACTGGCCGTGCAATCACCGCTCAAGGCTAGCCTAGCCCGTCGTCATGGCTGCGGGTCATGGTCTGCGCCCTAACTTGCTGCCTCGATTCAATGCACTTTTCGATATGCTGGGTCTTCTGTCGCTTGAGAAGAGAACATGCTTTTCCCATGGGCCACGGTGAGTGAGAGCGCGACGCACCCTGAAAGGTGTTCCCGACGTTGACGTGCCCGCCATGTCAGGTGATCCAGGAACCTCTAGTGCTCATGCGACACGCCAGGGGTTCCGAGGTTCAAATCGGTCTATCGGTACCGTTAGTGCGCTTGTTGGCATGGATGGAGAGCGCCGCCTTCGGGATATTGCCTGTTCAGGAACC # Right flank : TCATCTACCCCGATGGGGGAGAAGGAGTCAGCGTCAGGTCTCAGCTACAGGTTACTAACACAGAGGCATGGCTGCTTTCCCAAACCGAGATGGGACGCCCAGCGTAGTAACGGTAGCAGTTAGCCCAGAATGTTCGATTCGGGAAATCGGTAGTCAACAACGCCTAATAGCTGCTGATATTGGTCAAACATGGACTAAGACTCCCGTGTGTTGAGTAGCGATGAAAATGTCAGTGCGATCCCCTACAGTGCGTGTCGCTCGCGGATTTCAGAAGGAGCGACATGGCCGATCGGTTATGGGCACACAGCGCAAGAGGCGGTGACGGGGTTCGCCACGAACTTGGCGACCACCTGCGTGGCACGGCATCCCGCGCAGGTCTTTTCGGTCAGCCCTTCGACGCCGGCCCGCTGGCTGCGCATTGCGGCTTGGTGCACGATGTCGGAAAAGGCAGCTGTGATTGGCAAAAACGCCTGATCCGCGCAGAAAGCCACGGCGGCCGA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCACCGGCCTTCTGCGGCCGGTGAGCATCGCAAC # Alternate repeat : CCAGCACCGGCCCTTCGCGGCCGGTGAGCATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.20,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 54565-54890 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000049.1 Sinosporangium siamense strain NBRC 109515 sequence49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 54565 37 100.0 35 ..................................... CCAGAGGCATGGGAAGCGTACAAGTCCAGCGCTGA 54637 37 100.0 34 ..................................... GGCAGATTGCGTAACATCCGATCGGCGTTCCGCT 54708 37 100.0 36 ..................................... ACGAGTGCTGAGGTGCGGTGGAAGAGCCCGCGACAG 54781 37 100.0 35 ..................................... TGGGACGACTGGCGCGGCGAGCCGACCCGGCCGGG 54853 37 78.4 0 ......T..A.T.....T...T..C..T....A.... | T [54855] ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 95.7 35 CCAGCACCGGCCCTTCGCGGCCGGTGAGCATCGCAAC # Left flank : GATGGCCAAGCTGTGCGAGGGGTACGGCCATCGCGTGCAGCGGTCGGTCTTTGAGATCGTCTGCGACGACGCCGAGTTGCTGACCTTGCTGGACGGTGCGCGGCGGATCATCGATGCCAGTGGTGATTCGGTGCGGGTCTATCGCCTTCCTGCCAACGGGTTCGCGGCTGTGCATCGGCTTGGCGTTGCCGAGCCGGCACCTCATCATGACCCGTTGATCTTGTAATCGGCTCGGTCACGCTATCAGGATCGCCATCCTTATGGGGGTGGTCGTGCCTTGTTGCTTGAGAACAGAACAGTGGTCCTGTTTCGCCCCTTCCAGGTGTCTTCCTGAGCCTTCTTTGCGAAGGTAGTTTGAGGCCGCAGGATGATCTAGGAACCTCTAGTGCTCATGCGACACGCGGGAGGTTCCGAAGTCCATACCGGGCTGTTGGTGACGAAAGAGCTCGCTGACGACAGCCCGGAGATGTTCTGATACACACAATTCCTGCTCAGGAACT # Right flank : CCGGTGCTGCCGTACATCTCGCCCGACCGTCGGTGAGCATTTGCAACATCACATGATCGACGATCCCGTGGCTCTGTAGGTGAATGTGGGAGCCAGATGTCGGTCAGTGGCTCCGTGGCGCTTGGCGGGGCTGGGGCCGTATTAGCGAATTCCAGAGCCACCTGAGGGTTGGCGGTGCGAGTATCGAAGCGTTACTCCGTGTGAGGAGACGCAGGTGGCGCACCTGAAGTCCAAGGTGGAGGTATTCGCAGCGATTCGCCGGGATTCTCGTGCGGGGCTGTCGGGTCGGCAGATCGCGATCAAGTATCGGGTCAGCCGGAACACGGTGGCTGAGGCGCTGCGTCAGCCGTGGCCGGAGCCGAGGAAGAAGATGGCCCCGCGGGCGAGCCGGTTGGATCCGTTCAAATCGTTGATCGACGAGATGCTGCGAGCCGACCTGGACGCGCCACGAAAGCAACGGCACACAGCCAAGCGGATCTTCGCGCGGCTGATGGACGAGC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCACCGGCCCTTCGCGGCCGGTGAGCATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 37516-37061 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000052.1 Sinosporangium siamense strain NBRC 109515 sequence52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37515 29 100.0 32 ............................. CTCAACCCCACCCAGATGGAAACCCTGGTGCT 37454 29 96.6 32 ............................G ACGAGACTCGGCTGCATGGGGACCGGAGGATC 37393 29 96.6 32 ............................G GCGACGCCTGAGCAGCGCGACGCTATCCGCGA 37332 29 96.6 32 ............................G AGGCTCATCACGCCGCCGCAACGCTCGCGCCG 37271 29 100.0 32 ............................. CCGAGGGGGACCAGTGAGCGCACGTGAGGGAC 37210 29 100.0 32 ............................. GACGAGTAGAGCACCTCCATCGTCGCGGCGTC 37149 29 100.0 32 ............................. TCATCGGGCTCACCAGGGCAGCCAACGCCGCG 37088 28 93.1 0 .........................-..G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTCGGCCCCGCGCACGCGGGGATGTTCCC # Left flank : GGGACCCAGGTGAGGCCCGCTTCTTGGACGGCTCGCGCCCCGGCCTCATCCATTCGCTGGAAAGCCGGTGTTGCCTTCCCGCAGTCATGAATACCACACAGCCAGGCGAAGAATCGCCGCCCCCGCCCAGGCCCGCCGGCCACCTCATCCAGCAGCTTTTGCGTGGACACGGCCAGGTATCCGTCCCAGATCTGCTCAGCTACCGCGGCCGTGTCGAGGAGGTGACATATCAGCAGATTCATGCACCCTGCGGCCTTAGCGGCCGATTTGCCCCACAACGCACCCAGCTGCCGCACCAGACTCGGGTCTCCGAGAAAACCAAGTTCCCGCTCGTCCAAGCCACACCTCATCGAGCCCGACCTCACCGAGTGGGACACTAGATATCCCGACCGACAATCCCCTGAAACGCACAGCGCAGCAAGGTCAGCATGAGATCCATAAGCCGTATCGAACCGAATGAAAAATAGCTTCTGGCGTAGAAGAGGCCCAGGTCAGCGAGT # Right flank : CAGGCCGCGGTGACCGGTCGGCAGTCATGGCCGCTACGGAACGACCTTGTTGAGGGTGGCCTGGTACTTCCTCGCCTGCGAGGGCAGCAGCTCCTTCGCCAGCCTGAGGACGACGCCTCGGCGGACGTAGGTGTACTCCCCGAGTACCGAGGCGCGTTCGCCGATCTCCTGGATGTAGTCGCGCCGTTTCTGGGCCTGGGACGCCTTGGCGAAGACTTCGACGCTGCCTTCGTGCTTGCCGATCCACAGCACCGCTTTACTTGTGTATCCGTGGGGGCGGCCCATCATGTGGTTCGGGTCGGTGCGCTCGTTGTAGATCCGGCCGAGCCGGATTTTGAGTCCTCGCTTGGCGAGGGCACGGATGACGCCGGCGGCGTCCAGCTTGGGCGCGGCCTGGGCGAGTTTGGCGGGGGCGAGTGCGGGCGTGGCTATCGGGGTTGCTGCAGCGGCGTTGGTCGTGGGGGCCGGCGCGGTTCCGCCGCAGGCGGTGATGAGGGTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47821-48276 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000052.1 Sinosporangium siamense strain NBRC 109515 sequence52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47821 29 96.6 32 ............................T CAGCCGGCCACTTCGCGGTGAACGCCGTCACC 47882 29 96.6 32 ............................A CGTACCTCTCTGGTCATCCAAAACAACAGCGC 47943 29 96.6 32 ............................G ACTAAGGGCATTTGGCACTATGTCCAGCACTC 48004 29 96.6 32 ............................G CTCGGCCGGTAGCAGGGTCGATCTCCCCACAG 48065 29 96.6 32 ............................G ACGGTCGACATCCCGCTGTACGCAGTCGGTGA 48126 29 100.0 32 ............................. CTCGTCGACGCATCCGCGATGCAGGGTACGGG 48187 29 100.0 32 ............................. GGCACCAGCAAGCCCAAATGCGGTGACCACTG 48248 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTCGCCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAGGACGTGAACCAGCTCTGGGACGACCGGTCCGGAGCCGTCGCGGGCGGCACGAACTGGTCCAGCGAATCCGATCTGGTCATCAATCTCGGCCTCGACCTTGTTCAGCCGACGATGGGAGACGATCACATTGCCTTCATCGGTCCGGAATTCGATGTTCCCGGGGTGGACTCATGACCGTTATCGTCCTGATCGCCGCACCTGAAGGTCTTCGCGGACATCTCACGCGCTGGATGGTCGAAGTCAACGCCGGGGTGTTCGTCGGTAATCCCAGCCGCCGTATCCGTGAACGCTTGTGGGAACTGCTCGCAGTCCGTATCGGTGACGGACAGGCCATACTTGTGGAGCCTGCCCGCAATGAGCAGGGCTGGAGCGTTCGCACCGCCGGCAAAGATCGCTGGCATCCCACTGATTACGACGGGCTTATCCTGTCCGCCCGCCGCCGTTTCCAACCGAATGAAAACCGGCCTGTTGCTCAGTAAACCAGCAGGTCAGCGAGT # Right flank : CAGTCCCATCATTCGCCCTTTCCTTGCTAGTGTCGTCCGCCTGAAATTCGCCAGGTAAATCCATATGGTGTTGGCTGTGGCGCATCCAGGACCGTCAGCAGTGGAAATCCGCTTATCCGAGAGCGAACAGGCTCGGCTGATCGGCATGTCAGCGGAGTCGCCGAGGCTGGCGGTCCGGGCGAGGATCGTATTGGCGTGTGCAGGGCCGGGGATCAGCACCGCACAGGTGGCGCGAGATCTGGGCCTGGCCGAGAGTACCGTCCGCAAACGGCGTGCGGCGTTCGCCCGGGACGGGCTGAAGGCACTGTCCGACGACGCTCGCACGGGTCGGCCCAAGGCGGAGTTGACGGTGTCCGATGCAGAGCGGGTGGTGTTGCAGCGGTGGTGGGCGCGGCGGGCCACGTCCGCGCAGGTCCTGGCGATGCGCGCGAAGATCGTGCTGGCGTGTGCGGATGGCGGGGACAGCAAGCGGATCGCCGAGCGGTTGCGGGTGCACCCGG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 49687-51248 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000052.1 Sinosporangium siamense strain NBRC 109515 sequence52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 49687 29 100.0 32 ............................. ACGACTCAGACATGGCTCGGTACCTCCGTACG 49748 29 96.6 32 ............................T GTATTCACCTTCGGCATCGGGGGCGGTGGTCT 49809 29 96.6 32 ............................T GTGTGCGCGGGTGCGGGGGCGCGTACGAGAAC 49870 29 93.1 41 ..T.........................C TGTCCGACGCGCCACCTGCGCCACCTGCGCCACCTAAGAAC 49940 29 96.6 32 ............................T TGCGGGAGCGCCCATGACCGGGTCGTCGATTA 50001 29 96.6 32 ............................T CCGCACGGCCAGGCATCCGCACTCAGCAGCCT 50062 29 96.6 32 ....................A........ AGAGAGGACACGACCGTGTCCAGTATCCCCCA 50123 29 100.0 32 ............................. GCGATTACCGCCGCGTTGAGGGACCACGTCTC 50184 29 96.6 32 ............................C AACACTCCCCGCGGCGGTGCTGGACACCTGTG 50245 29 96.6 32 ........G.................... GCGACCTGCACCGCCACATCGGCACCCTGCCC 50306 29 100.0 32 ............................. AACTTCCGCGTCGGGCTCGCCCCCGGGTACGC 50367 29 100.0 32 ............................. CGCCGCCGAGATGTTGGAGTTGGTGCAGCAGT 50428 29 96.6 32 ............................C GGACTGGTGAGCCGCTCATATGGCTCCCCTTC 50489 29 96.6 32 ............................C ACGAGTCTCTGGATTGGGCTTTTCCCAGGACT 50550 29 100.0 32 ............................. ACATCGTCGACCTCCTCACCACCGCCGCCTTC 50611 29 100.0 32 ............................. GCCATCTGGCACCTCGTACGGCAGCGCCAGAC 50672 29 96.6 32 ............................C CGGGGCGGCCTGATCAAGGGCATGATCGTGGT 50733 29 100.0 32 ............................. GGCTGATGACCCGTCGGCAGCTCCGCGAGCTG 50794 29 96.6 32 ............................C TGCTGGACCAGGGGATGCCAGAGGAGGTCATC 50855 29 96.6 32 ............................T GTGAACCCCAGCGCCTTGGAGCCGGTGTGCAC 50916 29 89.7 32 C..........A................A CTCGTGCGGACCTTGTCCAAGCCCCAGCCGAT 50977 29 93.1 32 ....................A.......C ACCTATCTGATGCGGCAGAGCATCATCCGGTG 51038 29 93.1 153 ...............A..........T.. GCGAGGTGCCTGATAGCCGCCATTGTCGCTGTGAGGTCTCAGGACATCGGAAAACTTCGAACCTACGGGTTCGGGGGGTTCGTATTTTTGCCTGAGGCTTATAAAACGGACGGGGTCGATGACGAGCTCGCGAAGGAGTTCGTCAGCGGCGGT 51220 29 65.5 0 .G..A.GA....G...T..A...C...GC | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 24 29 95.6 38 GTCGCCCCCGCGCACGCGGGGATGGTCCG # Left flank : GCATGCCCGAGCGGCGCACCCATGACTACGTCCGCCACGGCATCACGAGCCTGTTCGCCGCCTTCAACGTCGCCGACGGGACCGTCATCGGCGAACTGCACCGCCAGCACCGCGCCGCAGAGTTCAAGAAGTTCCTCACCACGATCGACAAGACGGTTCCGGCCGAGCTCGACATCCACTTGATCTGCGACAACCACGGTACTCACAAGACGCCGGCGATCAAGGCGTGGCCGGCACGCCATCCCCGCTTCCACATGCACTTCACCCCGACCGGCTCCTCATGGATCAACCAGGTCGAGCGCTGGTTCGGCTACCTGACCGACCAGCTCATCCGCCGAGGAGTGCACAAGAGCGTCCAAGCGCTGGAGGGCGATATCCGCGCCTGGATGGATCGGTGGAATGCCGATCCCAAGCCGTTCGTGTGGACAAAGACCGCTGAGGAAATCCTCGAATCCCTCGCCAAATATTGCCGACGAATTTCAGGCGGACGACACTAGATT # Right flank : CCAAGCAGGAGAACATGGGTCTAGGCGTGGGTTCGCCCGACACCGATGTGGTGCAAGCGTCCGGCCATTTGCAGGGCGACCACCCCGGAGTCGTCGATGCACTCGCGACGCACCCGGGCGTGGGTGTCGGCGCTACGGTCGGCGGCAGGGAACCGCCTTAGCCAGCAAGGATTTGTCAACCCGCCTTTGCGAACCTCGTCCCTCCGGCGAGGTATCCCGAACATACTCGCTGCCATGAACCCCGGCGAGCGCACGCAGTAGGGCTGATGCGGGTACTTAAGCCCGGCTTCTGCGAGTAACCGATTGATGGGAACGGTCGCGGGGCGCGACACCAGGTTTATGGAAGACCTCGATCAGGCCAAGAAGGTGTCTTCATCCCACTCCTGCGGCTGAGCGACCACAAGAGTGGAAGACCCAGCCGGAGCTCTAAGCCCGCTGAAGGGTCCGGCAGCTCCTCATAACTGTCGACGCATTCCTGGCCGAAGTGCTCAGCAAGATAG # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.47, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 720-1841 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000044.1 Sinosporangium siamense strain NBRC 109515 sequence44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 720 36 69.4 38 AGCTGC..C.....A...G.............T.C. CGGGATACGAGCGGCCAAAGGCCGGGACGAACTCCTCA 794 36 77.8 36 .......A......A.TTT......G..A.....C. GGGTTGCCTCCGACGCTGGTGAGCCATTGGGTGGCG 866 36 94.4 37 .......A..........................C. GAGCGGGGCGATGCCGTAGGCCGGGTTGGTCTGGGAC 939 36 86.1 36 ........A.........G...A....A......C. CTGATGACGGCGATGCTGATGCCGCTCCGTTCGGCC 1011 36 86.1 37 .............T..G.G..G............C. GCCGGTCAAGTCGACGTGCTGCTGTTCCACCTCACCC 1084 36 91.7 35 ..................G........A......C. CCGACGGGACATGGCGTGTCCAGGTCGTACCGGAG 1155 36 91.7 36 ......G........G..G................. CAGGGCTCGTGGCGCGGAGCCCTCATGAGCACAGGG 1227 36 97.2 35 .............T...................... GCGAGGCTGCGAACTCCAGAATGGTCTGGTAGGCG 1298 36 100.0 37 .................................... CTGCGCCCTGTCGGGGTTCTCCCAGACCCACTCAGAG 1371 36 100.0 38 .................................... TCGTTGCCTGACGCGAGGGGTTCGCTGTCATGTAAGGG 1445 36 100.0 36 .................................... GGGGCGGTCAGGGCGGGATCGTAGCTGCGCTGGTGG 1517 36 100.0 38 .................................... CACATCAGATCCAGCCTACGAGGGTCCGAGTAGATACG 1591 36 100.0 37 .................................... GACAAGGACCCCCGCCTCAGCTACGCAGGGTGACCAG 1664 36 100.0 35 .................................... CATCAAACGTCCGCCCATACAGGTCACGCAGCGAG 1735 36 100.0 35 .................................... AGCGAGACCGCCTGGTTCGACAAGGCGACCTTCAG 1806 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 16 36 93.4 36 CCGCAATGGAGCCCGTCCACCAGGGACGGGTGCAAC # Left flank : AAGAAGCGCATCGGCATCAACGGCAAGCCGCGGTACACCGCGTGCTACCTCGACCTACGAGGCGTCCTCCGCTCAGCCGGCACCTTCACCAACAAGAAAGACGCCCTGATATCACAGAATGTAATTCTCCTTAGCTCGGCGCACAGCACTTCAGAGCGAGGCTGCTGATCTCGTTGTAATACTCACCGGCCACGGAAGCCAGCTCTAGGGCAATGCCGCCACACCAGGGAGCCGAAGGGCGGTTGAGATACTCAGCGGCTGTGGAGAGCCGGTGCTGGGCCGATGACGGCGACAATGACCCCAACGAGGGTGAAGTTGCAACGCTCACCGGCCGCGAAGAGCCGGTGAGCGTTCCAGGCAAGGCTCATGTCGCACCAGGCGGCGGTGCCGTTGCGATGCTCACCGGCCACGGAGTGCCGGTATTGGAGATCGACGACAGCGCGCAGCCGTGGGCGGCCAAGTTGCGATGCTCACCGGCCGCGGAGGGCCGGTGCTGGCCG # Right flank : CCCTTCGCGAACAGGGAAAACAACAGCCAGCGACTACATCCGCAGGGCTCCACTGGGTGTTTCGTGTCCGAAACAGGTCGATTGCGCTTCGGAACCTCCCAGGGAATCCATGAGAACTTGAGGTTCCTAGCCCAGCCCTCGGGGCCCTCCCGAAGGCCAGCTTCAGTTTTCAAGCAGCCCAAAGCGGTCACCCCATGGCTTGAAACAAGCCCAGTCCAAAATGTGACAGGTGCCCAAGCACGATCGGCCCGCCGACGGGCTCGGCGAACTCCAACGCAAGCGCATGCCCGCTGCGCAGCGCCGACGACGTCCTATCACGCCACCTTCGCCGGACAAACCCCACGAACGCAGAGCCCTCCCCCTCCTGCACACTCACCCTGCCAACCGCCTCACCCCGGTAGGCCAGCTCGCGCGTCACCTCCTCATGCAGATAGGCCTCCCCGTTCTGCCTCCGCTTGCGATGCCGCGACGGCACGAACGGCGTGACCGACCGCCACCGG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCAATGGAGCCCGTCCACCAGGGACGGGTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 16844-17589 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000044.1 Sinosporangium siamense strain NBRC 109515 sequence44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 16844 32 100.0 40 ................................ GCGGCCTGTTCGGCGAGGGAGCCGGCAAGGCCGGGATGAA 16916 32 100.0 41 ................................ GCGGCAGCCCGGCCGCTTCGGCCGGTGGGACCGCCTCGACA 16989 32 100.0 40 ................................ GCGGCAACGACTTCTGGAGCTGGCCCGCCGGTACTCCGTG 17061 32 100.0 40 ................................ GCGGCGGCCAGGTGCTGCCGCCTCACATCAAGCCCGAGAG 17133 32 81.2 42 .......T...C..AG.CA............. GCGGCGCGAGCATCTCGGCGACGACCGTCAGCCCTAGACCGA 17207 32 90.6 40 ...........CT....A.............. ACGGCCTGGCTAGCCGTCGCCGGCGTCTCATTGCTGGCGA 17279 32 90.6 42 ...........C..C..A.............. GCGGCCCGCGCGAGGTGTTTCTCGCGTGCGCCCCGGATGACA 17353 32 90.6 41 ...........C.....A...G.......... GCGGCTAGGCAGCGATGGACGAGGAGGTCTCGCAGCGGATG 17426 32 93.8 28 ...........C.....A.............. ACGGCACCCCGTCCAGGTAGACGCCGCC Deletion [17486] 17486 32 96.9 41 ...........C.................... GCGGCACCGAGGCCATGTCGACCTCGGACTTCCCGCTTCTG 17559 31 90.6 0 ...........C...-...............C | ========== ====== ====== ====== ================================ ========================================== ================== 11 32 94.0 40 GTCTCACCGTCTCTGAAGGGGACGGCCCCATT # Left flank : GCACACTGTGGCAACGGACAGCCGACGACCATGTCATGATCTGGCCTCTATGGACCCCCCGACTCGACGTCGAGGCGGTGCGCTGCCTGCTGGAACACCCGGCCCTGCGGCCAGTAGACGAAGGACCGACCATGACAGCCACGGCCTGGGAGCCGCTGGGGGTGTTCGGCGTCTACAGCGCTCACCGGCGGCGTCTACCGGGGCGTACGTTCGAAGGAGTACTTTCACCGAACACTGTCACCATCCGATGAGTGTTCGGACCACCACTGCTACTTGACACTTGAAAAACACCTGCCGCAGGCAACCTCTCAAAGCCACCGCCGCCAACCAGCATGGAACGGAAACCACAGCCCGTAGATCGTGGACGCGTGCTTAGGAACCTCAAGCTCACATGGATTCCTGGGGAGGTTCCTAAGCACAAACAGCACAGAAAAGGACAACTACAGGCATGAATGGCCTGAGAGATCGTCACACAACGAAGTTGTTGCAGTTCACAAGCA # Right flank : CGCGGCGACTGGCCCAAAAGCCAGCGAGCCCGCCCATGGCGTCTCGTCCCGCTATTGGCTAGAACCTCAAGGCCGACTGGAACACACGGTCCCACCGCCCCCTCGATGCCCAGCTGTTGAGCGACAGGATTGTGACAGTGCTTCGCGACAAGAAGTGTCAGTAACGCAATGTAATAGCGATCCCACACTGTCTCTAGCAGGTGCAGGAATCAATCTTCCCCGCTGCGCCGTTACCACGATCCTCCAAGGAGACGGCCCTTCTCCTGGGCACCTCCCAGGCCAAGGTCGGGTTCGCTAGCGTGGCGGCATGTTTCGGTCTGCGCGTCTTGAAGCGCTGTTCGGCAAGCGATTTGATCAGGTGGTCTTCGCGGACGTGATCGCGCTGATCGGGCGTGAGGAGGCAGCCGAAGCGGCCGACCTGGACTACAAGGAACGGGTTCACGCCAAGAACGAAGAGCAGAAGGTCGAGTTCTGCAAGGACGTCGTCGCCATGGCCAACG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCGTCTCTGAAGGGGACGGCCCCATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 55083-56432 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000044.1 Sinosporangium siamense strain NBRC 109515 sequence44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 55083 37 91.9 37 ..T..................C..A............ GCTGGGTGGTCTCATCGCTTCCCCACCCCTCCGAGTC 55157 37 91.9 35 .....C..........C..............A..... ATGGCCAGGAATCTGCCGGCGCGCTCCCACGCGAA 55229 37 94.6 37 ...................C...............G. TCGGCACAGTGGGGGGTGCCGTACGCACCATGAGCGA 55303 37 97.3 36 ...............A..................... CAGTGGCCCGCGCTCACCACCGCGCGCCGCCGCCTG 55376 37 94.6 38 ..............T...............A...... ATGGGGCTCACCGTGGTGACGGGGCCACCCGCTGCTGG 55451 37 94.6 34 ................C.............A...... TGTGGCGGATCTTGTAGGTGAGCTTGTCCGCGGT 55522 37 97.3 36 ......................T.............. CACCCAATGCTCGTGGGGTGTCGGCATGCTGGTGCA 55595 37 94.6 37 ..................G...T.............. CGGCGATGAGCCAGCCGTCCTCGTACGACTCGAAGAT 55669 37 97.3 37 ...................C................. TCGGGTGAGCGACCATTCTGACGACCGCGTCCCAGTT 55743 37 100.0 37 ..................................... CGGTGTCGGGGGTCGGCAGTTTCTGGGCGGCCTTGAG 55817 37 97.3 34 ..............................A...... TCGCCATGTTGCGGACGCAACGCCCGCGAATGGC 55888 37 94.6 35 ......T...............T.............. AGCTGCGCCTTAATCTCCTCATCCAGGTAGGCGAT 55960 37 91.9 36 .........A...........C..A............ CTCCAGGATGGCCCGCAACCGCCCCGCCTCCGCCGT 56033 37 100.0 38 ..................................... GTCTACGAGATCGCGGACGGCGACGCCGACACCGGGAC 56108 37 100.0 35 ..................................... ACCGGTTCAGTCAGAGGGTCGCGGCGCATCAGCGC 56180 37 100.0 34 ..................................... CACGGGTCGCAGATGCTGACCGCGCTGGTGCCGA 56251 37 97.3 35 ........................A............ GACTGGCCGCCCATCAGGTCTTCGACCGCCGTCGT 56323 37 100.0 36 ..................................... CTTGCGGTCGTGGCCTTGGCGGGGGGCGCCGCAGCG 56396 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 96.6 36 GCCGCAATGGAGCTCGTCCTCTCGGGACGAGTGCAAC # Left flank : CGTCCATACCGGTACCGGCCGGCAGGCCAAAAGCTTGGAGGTCTTCGACTCCTACCTGCGCCATCGCGAAGGCTGTGCCAACGCCGCACAGCTCCATCGCGAACTGCGCGGCCGCGGTTGCACCGGTGCGAGCACGGTCGTCCGCCAGTACGTCCGGCCGTGGCGGGCTGGCCTTTCCGCCGAGCCGTCACCGCGGCGGCCCCCGACGGCCCGTCAGGCCGCCGGCTGGTTCCTGTGCAACTCCGTCAACCTCAAACCCGACGAGCAGCGCGGTCTCGACACGCTGTGCGCCGCCAGCCCGCAGCTGGCCGCCCTGCAAGACCATGTACAGCACTTCGCAGAGATGATGACGCACCGCCGCGGTCGGCACCTCGAGGCCTGGATGACCGTACGGGCGAGCGAACCTCGACCTCCTCCGCAAGCGCGTCCTCCTCGCTGACTGAATCGGCGCTCACGGAACATCTGCCTGAGCCACGGTTGGCGCGTCGTCCACATGAGAA # Right flank : CGGTTCACCACGTGGGCAAACAGCTGACAGTAGTCGTCGTGCCACATCGGCGATGGGCGATTTGTCACCGAAACGGTTTGTCTGAGCTTCGGAACCTCCCGGGGAAATCGTGAGAGCTTGAGGTTCCGAACCTGTGACCCGGTCACCGGGATGGCAGTCTTCAGTTCTCAAGTAGCCCAATCCGGGCAGCTCACACCCAAGGCCTCGCCTACAGGGTAGGCCACTGGAACGTGAAGATCGCCAAACGGCGCGTCACATGGGGTGAGCGAGGGCCCCTAGGGAGCGCCTCGACGTGCCCGGGGTGTTCATCGTGCTGGAAGGCGATCTTGGAAGCCGGCCTGGCTGCTCCCCCGCCGTGTCGGGATCTCTTCTCGGGTGACGGCGTGTCCCGCGGACAAACCACGGACAAATGATCAAGGGCCTGGTCTCCGTCTCCGGAAACCAGGCCCTTGACCTGCGCTTACTTGGTAGCCGGGGGCAGGATTTGAACCTGCGAACTC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCTCGTCCTCTCGGGACGAGTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 856-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000078.1 Sinosporangium siamense strain NBRC 109515 sequence78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 855 29 100.0 32 ............................. GCGGGGAAATGGCTGACTTCCGCAACGGACTC 794 29 100.0 32 ............................. TGAACGACGTGTGCGCCGGTCGGCCATCCCGC 733 29 100.0 33 ............................. CGGCTTCCTCGGGGGGTGGCGACGCGCCACAGC 671 29 100.0 32 ............................. GCCGCGCGGGCGGCGGTCGCGCACATCACGGT 610 29 96.6 32 ............................T CCACGCATCCCCACCGTGTCAGGCGGGCTGCA 549 29 96.6 32 ............................C GCACCCGCCTCATCGAGACCCCCGACGAGAAG 488 29 100.0 32 ............................. GTTAATCAGGTGCATCCCATGGCGCTCACGGT 427 29 100.0 32 ............................. CACTACTACGGGACACCTCTGGAAGGGGCCAC 366 29 96.6 32 ............................C TTGCCTCGGACATCGGTTCCAGGACTCGTGAG 305 29 100.0 32 ............................. ATCTGAACTTGGAGCGTCGCCCGCGCGGTGGT 244 29 100.0 32 ............................. CCCGGTGCGCTAACACCGGGCCTTCGAGTGGT 183 29 100.0 32 ............................. GGAATTGGCGATGAGCCGCGAGGAACTGTCCA 122 29 100.0 32 ............................. CTCCTCGGCCTGGACGATTAGCCCGTCCGCAA 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : TCCCCGGGGACGATCTCGTCGCCCTCTGCCG # Right flank : GGGCGGTACGGCGTGACCATCTACAGCCACCCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9979-11833 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000062.1 Sinosporangium siamense strain NBRC 109515 sequence62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9979 29 100.0 32 ............................. CCCGCGGCGTCTACCGGGACATCGAGATCCGC 10040 29 100.0 32 ............................. CTCTTGGGCGACTTGCCCGCGAGATGGCTGTC 10101 29 100.0 32 ............................. GTCGCCAGGTCGGCGTACAGGGCGCCGCCGTA 10162 29 100.0 32 ............................. TCTTTGCGGCGTGCCAGGTCGGCGATTTGGGC 10223 29 96.6 32 ............................T TAAGGCGCGGTCGGTATATGAGCATGGCTCGC 10284 29 100.0 32 ............................. GATTTTCTCACCCTTCGGTGACATCAAACTCG 10345 29 100.0 32 ............................. ACGAGGCACCCGCCCAGAACTACCGGGGCCCC 10406 29 100.0 32 ............................. TAGCCAGCAAAACGCGTGACCGGGGCGTTCCG 10467 29 96.6 32 ......................G...... TTGGAGCGCGTTGGACCCAGGTCCGGCGATGT 10528 29 100.0 32 ............................. CCGCCGTTGCCGTTGTGGTGGTTCACGCCGAA 10589 29 100.0 32 ............................. GCCGCGCGTGTGGTGTGGAGGCTGGGCTTAGT 10650 29 96.6 32 ..................T.......... ATCGGACGGCAGCGCATCGTGCGCGCGGTGCC 10711 29 96.6 32 ............................C GCGACCGGACAGCCGATTAGGGGCGTCCCCGC 10772 29 100.0 32 ............................. CCGAGTACCCGCAGCACAACGCGGCACATTCA 10833 29 100.0 32 ............................. CGCACCACGAAGACCCACCGTCTGAAAACCGT 10894 29 100.0 32 ............................. TCGGAGTCGTCTTCGAGGGTGCTGTCGATCGT 10955 29 100.0 32 ............................. CTGTTGCCGTCGGTGGCCTCGATGGCGCCGTC 11016 28 93.1 32 .....................-......T TCGGGTGAGCACCGACTAGGGCTGACCCTGGC 11076 29 100.0 32 ............................. ATGCTTGCCGAGGGCGGTTACGACTACTCCGG 11137 29 100.0 32 ............................. CTCCACCGCGGTCCCGGGTCGCCGGGGCGGCC 11198 29 100.0 32 ............................. TCCCGCCGCTGGCGGCGTTGTGCTCCCGCAGG 11259 29 96.6 31 ............................A CCACCTTGGGGCGTCCGGACGTCTGAGCGCG 11319 29 96.6 32 .....T....................... TCGTTCTTACGGGAGTTCATGCGCGCGCAGGG 11380 29 100.0 31 ............................. GTGCTGAGCACCGGATTGCGCAACACATACG 11440 29 100.0 32 ............................. CTGCCCTATGTCGAGCCCGGTATGGGATTGCC 11501 29 100.0 32 ............................. TAGCCAGCAAAACGCGTGACCGGGGCGTTCCG 11562 29 96.6 32 ..........A.................. CTCTCGCACTACGAGGGCACCGCTTCCTCGGC 11623 29 96.6 32 ...........................T. GCCGCCCCATCCCCCATCGCTCGTGCCGTGCT 11684 29 93.1 32 .............CT.............. GTGCGGCGGACGCCTCGGGCGTCGGTCCAGGC 11745 29 96.6 32 ............................A GCGAAATGCTCTGTCTATTTGTCGTCGTGCAG 11806 28 89.7 0 ....-..............A......G.. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.2 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : AAAGCCGCCCAGAAAGAGAGCAACTGCCGCGCTTGCTCCTGACTTCTCCCCAGCTCATTCGCGATGTAGATGCGCAAGCCAGGGGCGAGGTAGTCATCCCATAGAGCTTCCAGTGCCGCAGCGGCATCTAAAAGGTGGCAGGCTAGTGGATAATGCCTCGACAGACCTCGCGCCTTCCCCCATAGCACGAGGTCGATGTCTCGCAAGTTGTCCATTTTGCCTCCCATCGGGGCTTTAGGGCCCGCTGACGGCAGCATCACTGCCGATCGACTTCACGAGGGCCCACTGTAGACACCACCACCGACATTTCTTTCCGAACAAGTGAATGTGAGCCTTACTTCTTTCCCAACGCCTTCCCCTCGCCTCGATGTACTCTTTTGTCGTTTTTATTACTGTTTCTGTAGCGATAGTTGGAGGTCGGTAGGATGACAGGTACGGCTTCGGCGCGAACGTCTCTCCTGAAACTGCATGTGCAAACGTGAAACCGCAGGTCGGAAAGT # Right flank : GTTGGCATTCAGGCCTTAGTGTCGACGACACGTGAAAACTCAAATGTCGTTGACACCCAGTCTGACGTGAGCATGTGATCCCATCGTGCCCACTTGGTAGGAAGCTGAGGTGCGCGACACGGTTTCGCCCGAACTGCCAAGCCACGACTGCACACCTGGCTGTCGCGGTCGGTTGCCGCTGCGCGGAGCAAGATATGTCTAATGTCCCATTAGCTCTGGACCCGGCGGGGTCCAGCAGGGGAAACTGCTGATCAGAGGGCTCACCCCGCGCGACCTGGTCGGCGGGGTTTCTGATCAGCAGGGACCGGGCGCGGTCCTACGGGGTGGTCAGTGACATGTCCGCAGAGAACAACCAGGCCGGTCCGGGCAGGCGTGTGGTGCGGCGGCGTGAGCGGCAGGCGGTGCCGCGTTCGCGTGTGGTGAAGTTCGTGCTGACCGAGCAGGAGTACGGCGAGCTGCGGGGGGCCGCCCAAAGGCTCGGGCTCGCGCACGGGGCTTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30793-31311 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000062.1 Sinosporangium siamense strain NBRC 109515 sequence62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30793 29 96.6 33 ............................A GCCAGGCGACTGCCTGGTGTTCGAGGACTCCCC 30855 29 100.0 32 ............................. AGTGGTCGGCGGCTGAGGGGCGGGGACGTGCG 30916 29 100.0 32 ............................. GGGACAGGATCATTTTTGCGGATGAAGCCTAC 30977 29 96.6 32 ............................T CTGACGTGACGCATCGCTGCGTGCATCCGCTA 31038 29 100.0 32 ............................. GAGTGTGGACAGATGCGGGATCTCTACAACAA 31099 29 96.6 32 ........T.................... ACCCCGACCCCACCGTCCAGGCCGGGATCGAC 31160 29 100.0 32 ............................. CGGCCGTGGCGTTGATCCCGCGGGCCTCCCGT G [31182] 31222 29 100.0 32 ............................. ATGGCCTCGATGTTGGCCTCGGCCATCCGTCG 31283 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.9 32 GTCCTCCCCACATGCGTGGGGGTGAGCCG # Left flank : GCCTGGCGCACTACCGGGGCGGGGTGGGAATTGGCCTGCACGGCTGGCCATGACCGGGACCAAGCCAAACAAGCCAGTTAGTCTCGCCTCGCCGGGTTGGCGCGCTATGTGAGAGGACTGGCAGGGCAGCGCCTGTGATTGCCCTTTGGGCGGCGTGGGTCAAAGTAGCGTGCCCAAGACACCGTGAGTTCTCCAGCGGCCTCAAGAGACGTCCTCGCCGGACATAAGCCGATGAAGTCACGAGCTCAAATCTGAGGCACAGTGACGATCTACCGCTGCAATTCCCTCTTGGCCGCCGGCAGACAGTTGAAGAGTTCGGACGGGCTGCCGAAGGGCCAATAGAGTACCTGATGGCGCACAACTGTCCACTTTTCTCACCAAGCCACTGTCAAAGCCTCGCACACCCCTCCCCCAGATTGACCGACCCGCCTTGGCAAACACCGCCAAATGCCGACAGGAGCATCGCCCCAGGTCACCGATATCGACCCAGCTCACGAAGG # Right flank : GGGCATAGTTCTCCCTCGGGACTATCAGGAGGCGTCCTCCCCACATGGGGGTGAGCCGTACGTCGAAGACAAGGTGGCTATGAAGGTGTAAACGAGAGCCGGGTGTTGGTTGGATCGAGAGCCAGACATTGATCAATGGGCTCAAAATGTTGATCGCTTCGGGAGCCATCATGACCTGCCGGGAGCGCCGGTCGGGTGTTGCAGCGAGTGACCAGCCGGAGTTCCGGTGCCGTCAGAAGGCAGGGATCCCGCGAGGCGTCAATCACCTGAAGTGAGTTCAGAGAGCGTCGCCGTGGAGGACCCTGATGATCTGATCGCGGGCTTGCTGCAGGCCGAGGCCCAGGGCCTCTGTTCCAACCTCATGTAGGAGACCGAGCAGGAGATGCTCGGTGCCGACATAGCGGTGCCCGAGCCCGGCCGCCTCATGGCGGGCCACTTCCGTAAGGCGGATGAGGTCTGCGCTCATCGCTCGGCTGCGGGTGCCGCCGAGGTCGACGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACATGCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86249-85958 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000009.1 Sinosporangium siamense strain NBRC 109515 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 86248 30 100.0 34 .............................. ATAGATCCTGAACCGTCCGGCCATGTACCCTCAC 86184 30 100.0 36 .............................. GGAGTGCCGTCGGCCAGGCTGTCACCGGCCTGCCTG 86118 30 100.0 37 .............................. TCGGCGTACTCGGCGAGGATGTCTCGGAGCTGCTCCC 86051 30 96.7 34 ............T................. TGCCAGAGGGACATTGTCGCGATACTCCGCGCGC 85987 30 93.3 0 ....................G.......G. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.0 36 GTCCTCATCTCCCCTACGAGAGGTCACAAC # Left flank : TAGCCGATGACATTCTTGGCAAGATCTAAGGAGGCGAACTACAACCGGGCGCCCGCCTCCCCACAGAGGTGGAGATGGCCGCCAAGTACGGCGTCGCCCGCAACACCGCACGCGCTGCCATAGCCCTTCTCCGCGACGCATCCTGCGTCCGCACCCAACCGTGCAAGGGCACCTTCGTCACAAAGATCACGGATCCTCCCCCTCACGCTCGCGCCGGTGGGGCGATACGGTGACCAGGCCAGACCGGCGGGCGGCGCCGGCGGCGCACGCCCTGCTCCGGCGCCTCCCACGGACCCTCCACCCGGCGGAACGCCGCAACGGCCCACATGGAAAGCCACCGGACCCGAGTCCGCAGATATCCTGTGACCCTGATCCCTGACCAGACCACAGCGACGGATTTCAGCGACACACCGGGCTCGGCCGCACTACCGGAGGTCCGCTGAAAACCAGACCGAAAACGCATCGACCCCACCGCCTGCGAGCAGCGGCTTTACTCTAGG # Right flank : GGAATTCAGCAGTTGCAGTCACCCACCCGCTTCCGGTCCTCACCACATACGGGGCGGCGATGACATGGGCAAATTGGATGGCCTCGGGCTCACCGTTGACGACAGCGATGAGGACGCTGGAATCGATAATCACGCGGGTAGGCCGGTGTTGGGGTTGTACAGGTCTTCAATGGAGAGCCGATCCTGACCCAAGCGGGTTCGCATGCCGACGGCGGTACTCAGGATGCGTTCGGCTCTGCGAGCGGTTCCGGTGCGGCGTTCCAGCGCCTCCAAGCGGCGTTCGAGCACTTGAGCGGCGTGCTGAGTTTCCTCGGCCAACCGGATGGCCCGTGGGCAAGGTCATGAATGGGCTCATGTTCGAGGTCCACGCTCACCGTCGCTCGACTTTTTCGGTCGCGTCACCTGAGTTGCACTTTCAGCGTAGCCGGTGACAAAGCCTTACTCACGCAGATGGGTGGCATCCGTCAGCGTCACGAGGTTTTCCGTCGAACCTGGTCACG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCTCCCCTACGAGAGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 204878-205300 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOW01000010.1 Sinosporangium siamense strain NBRC 109515 sequence10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 204878 30 100.0 34 .............................. AAGAGGTCTGCGAGTACCACCCGGACAACGCCAA 204942 30 100.0 36 .............................. GAGAAGCTGATCTGGCGAGAGGCCGGGGCGGCATGG 205008 30 100.0 36 .............................. ACGATCAGGCTTTCCAGCATCCAGGCGAGCGCGATC 205074 30 96.7 35 .............C................ GCCATCCATGCCGAGATGAGATCACCGGCGGCGAG 205139 30 90.0 33 ......G................GC..... CCACGCCCCTCCTCCGGCGGCGAATATGCCGCA G [205158] 205203 30 90.0 38 ............T........A..C..... TTAGGGCATCCGCCCCAGTCCTTTTCTACGTTGCACCT 205271 30 90.0 0 ..C......G..............C..... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 95.2 36 GTACTCATCACCCTTCCGAGGGGTTGAAAC # Left flank : TTACGACGTGGTCGGCCGCTTCGGCGGTGAGGAGTTCGTGGTCCTCCTGCCGCGCGCCGACGTGGCCGAGGCCCGCCGCGTCGCCGAACGCCTGCGCACCCGCGTGGGCCGCATGGCCGTCTCCGCCGACGAGGCCATGGTCACCGTGACCATCTCGGTAGGCGTAGCGATCATGAGCATCCACGGCGACGACCTCATCGAACTGCTGGCCGCGGCCGACCTGGCCCTCTACCGCGCCAAGGAACTCGGCCGCGACCGGGTGTGCATCCCGGAGACGTCGTCCCGAGGGCAGGGCTCGGCGGAGGCCCAGCCGCCGCACGCCTAGTGGCCCTGGTTTCACCGGCCACTTGGGGTGCTGACGTCACTGGTTGTGTCGGCAGTAGGAATGAGCCATGCTTTGCAGCAGACCTCCAGGGTTTGATGCGCGACCGGGGGTCTGCTGCAAAACGCAGCTACCGAATCCTTGAAGGTCGCCGCCTGACCTGCGGCTTTACCTTGGG # Right flank : CCGAACGGCCTGGGCGGGGACAAGGACCAGATTCGCCCTTCCGAGGGTCAGAACTGTATCCGCATGCGCACCTGAGGCTGCGCAGGGATGTCCTCATCACCTCTTTGAGATCGAAACACCGGCAGGCCTCAGAGGTCTGGCTGTGCCGTACGGTCCTCGTCGTGCTCTGAGCGCTCGGGCCTCAGTCCCGCTGAAGTCAGGACTCGGCACAGCATGTGGCCGAAGTCACCCGCGAGTGGTGGTTCCGGTCTCTCAGGGGACAGGAATGTGGCCTGCAAAAAGGGAGACCTAAGGTGTGTCCGGGAGGCAAGGGGCCAAGGTGGGTCCTAACCCCCGATTGTGACCTGGGGAGGGGCCCACGGTCTGGTCCTGTGAAGTGCCTTGTCCGGATAGGCTTTACGCCATGCCGGAGTACATCTACACGATGCAGCGCGTGCGCAAAGCGCATGGCGACAAGGTGATCCTCGACGACATCACGTTGTCGTTCCTGCCTGGGGCAA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCATCACCCTTCCGAGGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //