Array 1 15978-16232 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHO01000010.1 Corynebacterium pyruviciproducens strain UMB0763 ERR1203633.17957_1_45.10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 15978 36 100.0 36 .................................... CCGTGTTGGGTTAGGGTCGGTGGCTTCTACCGTGGT 16050 36 100.0 37 .................................... ACGTCAAGCGCACAGCGAGGTCAGCGACGGCGGTTGA 16123 36 100.0 38 .................................... CGCGATAATCCATCTCATACTTAGCGGCCAACTCTTCC 16197 36 77.8 0 ...A.......C.A.......A...G...C....AT | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 94.5 37 GTCGCTGCTCTTTCGGGAGCAGCCTTTCATTGAGGG # Left flank : CAAGACCTACAACCGCTGGTGGCCCTGGCTTGCATGCATGTGGGTTCTCATCCCCTTCACCATGGGGTGGATGACATCGTTTGGCACGATTGCGATTATTGGGCGGGGGTAGGGGTCCGAATCCATTGAGGCCCTATGCCGATGATCCCGAAACGTCCTACCGCTTCCTTCCCGCATTTAACAACCCGGAATTGGGGTAGAGACTACAGATTCAGATGTTCTTCAGGGAGTAAATACCTGGCCCCTTTTTTTGGGGGACGATTCGCAACAAATTACACCACAGTGTTGCCTAAGGATCGTGGCCTACGGGCAGAATCTGAAACCTATTTTTCAATTTTCACTTTCGCCACGAATCCCGTGCCAGGTGTCTACCAGCAGTGATGCCGAGGCTTTTGACAGCTGTTAACGGTGAGTAAGTCTCAACCAAGTAGCATAGGAATGGTCACGCGGCCTTTCATTGAGGGTTGTTTTGTAGCTCCGGAGGAACCGGAGGCACCGGC # Right flank : TCTATTTTCTCTGGTCGGGGATTGGGAGGCTTCCTTCGGTGCCCCGCGTGACCGCGACGTCACCGCCCATGGGCTGAGCCGTGGGGGAGACTTGGGGAGGGAGGATGGATGGGCGTCGAGAAGCGGGAAGGGGAGGAAGGCGTGGCCACGGTCGTTGAACAGGGTGTTCATACGCTAATGGGGGCATCCGCAGGTGGCGTGGGTTCTGCTCGCTAAGCCGGCGCGCGTCGATACTGTTTTAGGATTTGAGCTCCGCCTAGGTTTCGGGTCGTAACCTTTACCTTCTGTGTAGTACAATGCGAGGTACTGAAATAAGGACAGATCTCCCCTCCACGCTTCTCGTCAGATCAGCGCCACGCGAGAGGGGGGCATATTACTGTTCCGACTCGGTGGACGCGAGTTAGAGCACTAGCTTTGGCGTGCTAATCAGTGCGCGGCGGCAAGCTGTCGACACTTCACCAGGTCAAACCCTGACTGTGAGTGCGCGACCGCGCACTAGT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCTCTTTCGGGAGCAGCCTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 57677-53073 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHO01000005.1 Corynebacterium pyruviciproducens strain UMB0763 ERR1203633.17957_1_45.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 57676 28 100.0 33 ............................ GCATTGCGGTTTCCGGGGTGGGGTGCAGGGTGA 57615 28 100.0 33 ............................ TACGGACGTATGCGCAGGCCGGGAGGTACTAGC 57554 28 100.0 33 ............................ CGGCTACACGGATGTATATGTTTAGCGATATTG 57493 28 100.0 33 ............................ CCGTCCCAACCCGGATGAAGAGCAAGAGGGTGT 57432 28 100.0 33 ............................ GTACCCGGAAATTGTGTGGGTGCTGGGGACTGT 57371 28 100.0 33 ............................ CCCCGGATTGCATGGCAACCCGGTTACCATTTA 57310 28 100.0 33 ............................ CAATTTGCATCCGATCCTCCTTCCAGCCACAAC 57249 28 100.0 33 ............................ GTCGTGTGGCGTCTTCCCCGTTCGCGGCGCCGT 57188 28 100.0 33 ............................ GTCGCCTGATTGGCCACGAATTGGCCACGAATT 57127 28 100.0 33 ............................ CGAGGACTGGAACGTGTGCATCACCTCGTCGAT 57066 28 100.0 33 ............................ CCTTTCTAGCCACCCCCCGTTAGGGGGTACTTT 57005 28 100.0 33 ............................ CCCGCGTAAAACAGGCTGTTAGCGCAGGTAGCG 56944 28 100.0 33 ............................ GCAGGTTGATTCCAAGGTTAAATCGGCACGGGA 56883 28 100.0 33 ............................ CGGTGGCTCCGATAACCACTTTCATTATTGGTG 56822 28 100.0 33 ............................ CGAAGTAGTGGCGAGTGTGAGGGATTGTTTTTA 56761 28 100.0 33 ............................ CTCCGTTCCCGTGGTGTGATTCACATATAACCA 56700 28 100.0 33 ............................ GAAAAGCTAGACGCGGAGGTAGCTCCGCTTATG 56639 28 100.0 33 ............................ CTGCTTAACCCGCGAAAACAAAAACCCAGGCCA 56578 28 100.0 33 ............................ CTGGCTTGTAGAGCGCTGCAAACTGTGAATTTA 56517 28 100.0 33 ............................ GGGATGCCAAAACAGTTTCAAACAGAAGTCACA 56456 28 100.0 33 ............................ CAAATCCGGCCGGTCCTTCACCCAGCCACGAAG 56395 28 100.0 33 ............................ CTCCATTTTGTATTTGCCGGTGTTGACGGGGAG 56334 28 100.0 33 ............................ CCTTTGGCGAGTTCCGCGCCGTCGATAAGGAAA 56273 28 100.0 33 ............................ GTTCAGCGGCGATGGTTTTGAGCTGGTCGACGG 56212 28 100.0 33 ............................ GGACGTGTCACGTAATTAACGGTAGAGAATGAG 56151 28 100.0 33 ............................ CAGTGGGTGCAAACGTTTGTGCTGACAGGTTCT 56090 28 100.0 33 ............................ CCGACAGAGGGCAAGAAAATAACACGTTCGACA 56029 28 100.0 33 ............................ GTGGAAGTTAGCGGAGTGTGTCAATAGTCGGCA 55968 28 100.0 33 ............................ GTATTCGCCGGTTTCGGCGTTGCGCATGAGTGA 55907 28 100.0 33 ............................ CTGCCCATTCTTCTATCGCGTGAAAATACCGGA 55846 28 100.0 33 ............................ CGCCAGCTGCAGACGAAACACCACTCTTCGCAA 55785 28 100.0 33 ............................ GAGCCGGCTAACACTTGAAATTGAGCTTGAATG 55724 28 100.0 33 ............................ CAACTACGGACGATAGGCCAATCAGTGCGCTGA 55663 28 100.0 33 ............................ CAACTGGCCAGGTTTCGCCACCCGGCGAGCATT 55602 28 100.0 33 ............................ CCTCCAGAATATCCATTGTGGACGGTGCGTAGG 55541 28 100.0 33 ............................ GCTAACACAGGCGCGTAGCGCTGAAGAAGCTGC 55480 28 100.0 33 ............................ CGAGATCATCGCCGTCGCCCCTACCGTCCTCGA 55419 28 100.0 33 ............................ GCAGAGCGCATTGACGAACTGTTTCGCACGTGC 55358 28 100.0 33 ............................ CCGTCTGAATGATGTCGATGAGGGAGAATTGGC 55297 28 100.0 33 ............................ GCTCCCCCTCCCCTTTCATTGCCTTGGTAGCTG 55236 28 100.0 33 ............................ TTTCGCATGAGTCCGAATCTGAATGAAACAATC 55175 28 100.0 33 ............................ CAAATCCGGCCGGTCCTTCACCCAACCACGAAG 55114 28 100.0 33 ............................ CTCCGCTGGTTGCTGCGTCGTTCGCGGTGTGGG 55053 28 100.0 33 ............................ GCTCGGGCGCGGATGCAGGATTCCGGCTGGCGT 54992 28 100.0 33 ............................ GGATTAGCCCAAGCCGACGATGGTAGCTGGTAC 54931 28 100.0 33 ............................ CTTGTCTTCGGTGATCTTCTCGTTAGGAGTAAG 54870 28 100.0 33 ............................ CTTGGTTTTTGCTGGTGTTCGCGTTTTTGATTA 54809 28 100.0 33 ............................ GCCATGATATACTCGGCCTTACCTTTCTGAGAT 54748 28 100.0 33 ............................ GTCGGCGCACACCGTCAGAAACTGGTACCGGGG 54687 28 100.0 33 ............................ TGTGGGGGATGTATGGAAAACAGTTCCGGCGGT 54626 28 100.0 33 ............................ CAGCCCCACAGCACTAAAAACAGTGACCGGAAC 54565 28 100.0 33 ............................ GGTCGTGAGCGTCCTCAAATTCGGCGAGTTGTC 54504 28 100.0 33 ............................ CACAAGTGCGCAGTTCAGAGCATGTATTTGCAT 54443 28 100.0 33 ............................ CATGCGCTGGAATCAACCAACAAATTTGAATTT 54382 28 100.0 33 ............................ CTCAGTTGCGAAGGCCTGGTAGTCATGCGGTTT 54321 28 100.0 33 ............................ CGGCATCGAGCTTCTCCACTCCCCAGAGTGGTC 54260 28 100.0 33 ............................ CCAGCCGATCTCCGACGTCGGTCTGCGCATCGG 54199 28 100.0 33 ............................ GCATCTCATAGCTTTCCCTTTTTTGTGAAACCT 54138 28 100.0 33 ............................ CACTCTATAACCCCAGGCCAGGGGGGTACGGGG 54077 28 100.0 33 ............................ CGAAGTGGACACCCTATTCCAGATGTCCACAGC 54016 28 100.0 33 ............................ CACTGTGGAGCGTTTTGAGCGTATGGCTTGCGG 53955 28 100.0 33 ............................ GATTGCCCCGCACTGGTGGGGATATGATGGCCC 53894 28 100.0 33 ............................ CCTCGAAAACGGCGAAGTTTGCTACTACAACTC 53833 28 100.0 33 ............................ CTCACCTCGACCTGCTTACCCACCGTGCCGATC 53772 28 100.0 33 ............................ GTTCAAAAACGGATACAATTCAGGTCGCGTAGA 53711 28 100.0 33 ............................ GCGCTGGTCAGCGAGGTGCTGGGCAAGTAACTA 53650 28 100.0 33 ............................ TCTTCGAGAAGCTCAGCGGGCATAAGCGGGGCA 53589 28 100.0 33 ............................ GGCGCGCCTGCGCCAGTTGTGCGTCAATTTCTT 53528 28 100.0 33 ............................ CTGGACCACTTTCTCCCGCAGGACGACTACCCC 53467 28 100.0 33 ............................ CACGACAGGTTCCATACCGCGACCTGTGGGCAA 53406 28 100.0 34 ............................ GCCATGGGGTGTTTACGCAGGCTACGCAGAACTT 53344 28 100.0 33 ............................ CGTGCTGCCGCCGAGGAGGCGCGGAAGGCCGCG 53283 28 100.0 33 ............................ CGCTGGCACCTCCTCACCATCCTCAACGAGGCC 53222 28 96.4 33 ...........................T CGTCGAGGAGGAGCGCTCCGACTGGACGCCGTG 53161 28 96.4 33 ...............A............ GAGGGGTCTATCCCCCGCCTATGCAGGTGACAG 53100 28 89.3 0 ...........C...........A..G. | ========== ====== ====== ====== ============================ ================================== ================== 76 28 99.8 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : CCCCAACGTGCTCGTCACCACCCCACTGCCGTACAACGAGTTTTCCGCCCTCATGAACCGCGCCAAGCTCGTGGTCACCGACTCCGGTGGCGTGCAGGAGGAGGCGCCTGCCCTGGGCAAACCCGTGCTCGTCATGCGCGACACGACGGAGCGCCCCGAGGCCGTCAGCTACGGCACCGTCAAACTCGTCGGCACCGACGAGGACACCATCGTGCACGAGGCCTCCGCCCTCCTCACCGACGACAAGGCCTACGACGCCATGGCCAACGCCGTCAACCCTTACGGCGACGGTGCCGCCGTCCCCCGCGTCCTCGCCGCCATGGCCGAGCTCATGGGGCAGGGCGAAAGGCTGGAGGATTTCCGGCCGTAGGGAAAACTCAACCCTGCATCAAAACGGCTGTGGACGCGCACGAGCATTCATCACTAGACCACCCGCCACCGCCCAAACAAAGTTAAATGTAAAATAGCATCAGGCGCTGCAAACCGGCTGTTCAAAAAGC # Right flank : ATTTGCTGGTTTTCACTGTCCCATGATTCGCCTTCCACTCCGCGAAAACACAGCGGGGACGTGTCGAAGGGTAGGTCAAAGTTCGTAAACTAGGTGGACTCTATCTAGCCCTTCAAGCCTCTTTCATGAACGTTCCCCTACCTGATTTGACCAGGCTCATCGGGTAATTTTCGACAACTGTTCGAAAAAGTCCAAATCCGCGTAACTGCGATGTTTTAATATTTTGAAGTATGAGCCCACACCCTAAGAACGCTGATAAAAACACCTCAGTGGATTCTTTCGACGAGTTCTGCAACGCAGCAGAGAGACTTGCAAGCTCATTTTCGGTCGAGTCCAGAGCGCTGTGGGCCAAAACACCGGAAAACCGCGAAGATAAATCGGGCGCGTATCTTTCGCTACCTCAGCATTTGATTGACTCGGCCTGTGTTGCTCTTGCGCTTACGCAGAGTTGGCTGAGCAATCAAACTTTAAGATTTTTGGAAGACGAGTCCGGTCTAGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //