Array 1 956346-954577 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021376.1 Oceanisphaera avium strain AMac2203 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 956345 28 100.0 32 ............................ GCCCAGTGATTGCCCTTCGGTGACGCCCAAGG 956285 28 100.0 32 ............................ TTAAAAGTGTCGGCTCGGCTTTCGATTTTCAC 956225 28 100.0 32 ............................ TTTGCTTCGCTCATGTTTTTAGAAAAAACACT 956165 28 100.0 32 ............................ TCATGAAAGAGAATCAGTTCTAAGCTCAATTC 956105 28 100.0 33 ............................ TTCGGCCTTCCAGTTGACGCGCTCACCTGTCTT 956044 28 100.0 32 ............................ TTAAAACGTGCTCACGGCAGCGATGACTTTTA 955984 28 100.0 32 ............................ TGATGAATATCAAAACCTGTTGATGTGTGAGT 955924 28 100.0 32 ............................ ACACGCGGGCACCGTAGGTTTTTTGGTTAAAG 955864 28 100.0 32 ............................ TTGTACAAACGGCAACGCGCTAAATTTACGTT 955804 28 100.0 32 ............................ GACAATCCAAGAGTACTCAAGGACTAACCCCC 955744 28 100.0 32 ............................ GTTGAGGGTTTTGGCCTCTGGTCTTTCGGTAA 955684 28 100.0 32 ............................ TCTAACCGCCGCTTTAACTCAGCTTCGGCCTC 955624 28 100.0 32 ............................ GCTAATGATGTTGATGATAGTGCCAGTATTGA 955564 28 100.0 32 ............................ GTGCCACACTCTACTTTACGGCCCGTGTTGGC 955504 28 100.0 32 ............................ GATAATGAAAAAGTGCATTTTGATATGGCTAT 955444 28 100.0 32 ............................ GGTCATATCCATTGTTTCTTTTTTTATTGGAG 955384 28 100.0 32 ............................ ACTTACGGGTTTGCAACTTGCCTTCGATGTAA 955324 28 100.0 32 ............................ GTGAAGAGCTAGCAACTCTGTAATTATTTAGA 955264 28 100.0 32 ............................ GTTGATATGGGCTTAATGCAGATTAACAGCGC 955204 28 100.0 32 ............................ CACCCAAGCGGTAAACATTTGTCTGGTTGAGG 955144 28 100.0 32 ............................ ATCAATGTAGGCCTGATATTCCGGCAGATACT 955084 28 100.0 32 ............................ GCAGCAGAACGAGCATAAGCGCGTAAATACTG 955024 28 100.0 32 ............................ TGAGTGCGTAGACGACCAGATGGCGGAAATCG 954964 28 100.0 32 ............................ TTACCGAAGCCGAAGTGCAGAACATGGATCCG 954904 28 100.0 32 ............................ GTCACCTCAGAGGGTAAGTGCACCGGCTTGCA 954844 28 100.0 32 ............................ AATACGAAAAAAATATTATTCATCGTTGTTTG 954784 28 100.0 32 ............................ TGATTTTTGCGCCGAAACGGTTAGCGCTCGGG 954724 28 100.0 32 ............................ TCAAGAGGCTGAGCAACAAAACGAAGACCTTT 954664 28 100.0 32 ............................ TGAGCAGGGTGGCGGATTGGTGGCAAGGTGGT 954604 28 67.9 0 .......A....C....T..T..TATTT | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.9 32 CTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : ACTCATCAAAAATCGATTCAGCCGGTGCCCGAGTCAACTAGCCATGTCGCTTTCGTTCGTCGGCGGGTAAAAGGTCAGGCACGGATTGAAAAAGATATGCTTGATAAAGCCCTGCTTTGGTCGAAAAAGTCGGGCCAAAATCTTGAGCTTTGTTTGCAGCAATTAGAGAAAAGCAAACCGCAAATTAAGCAAGCGCCTGCTTTTATTTGGATGGAAAGCTTAGAGACCAAAACCCGAAACCCTATGGGCTCTGCTAAGTTTCCGCTGTTTATTGAGCGAGTCGAGCTACCAGAGGCAAATGAGGGGTTATTTAATTGTTACGGCTTAAGTGCGGTGCGCGGCGAGCAAATAGTCTCGGTACCCCATTTTTAACCTAAAAATAAGCCCTTTAAAAATATACATTTAAAACAGATAGTTACAGCAGAGCGTAAAATAAGGGTATTTTCTCGTATTCTTAGCTAAGCCTTTGTTGTAACTATTTTTTATGTTATAAATCTACT # Right flank : ACTGTTACTGTCGCAATAAGAGAGGAGGAAGGGGAAATAGGCTCGCTTCTATTAGGGCCGCGGGCTAATCTTAATGAGCTGTAATATTCACTTTTTCACTTATGATGAGGAATAATATGCCACAAGATGCAAGCACTCAGCCTACCCATACCGATGAACTCTTGCGCTCTTCGAGCAAGCTGCGCGGGCGAATTGCTGATTTATCGCTACAGCTTAGCCGCGATTTGGGGCCTATTCCCACTCATATGAAACCGCGCGATGTGTGGTTAAATCAATTAGTTTCCGCCCAAGAAACGCTGCCTAGAGGCAAGTTTTTTAATCAGTTTCGCTGTAAAGATAAACTAGAGCAATATTGTTTAGCCGTGACCTATCTGCGCGACCTAGCTAATCAAACGTCTTAATGTTTTGAATGCTTAATTACTAGGCTGCCTTGGCAGCCTAGTAATGGTTATACCGCAGGATTGGGTATGGTTTGGTGAATGGCTTCAATGGCGCTTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //