Array 1 142191-141623 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800863.1 Pseudomonas aeruginosa strain HMSC064G05 Scaffold992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 142190 28 100.0 32 ............................ GGGGAGGGTTGCGCCAGGGCGGCGCGGGCCTC 142130 28 100.0 32 ............................ ATCGTACCGCCGCGCTGCAAATCGAGGTCGCC 142070 28 100.0 32 ............................ ATGATGGTTTTTCGGTTCTGTCGGACACAGTC 142010 28 100.0 32 ............................ GCGACGAGATCGAGGACGGCGACACTACCCTG 141950 28 100.0 32 ............................ CTTGTCGCGGATGTACGCATCGCCCCAGAGGT 141890 28 100.0 32 ............................ AGCACCGGCGGCACCTTCGTCAGCAAACCGTA 141830 28 100.0 32 ............................ TGGCACAGGCCGATGAGAGCGAGCATATGATT 141770 28 100.0 32 ............................ GCGGGAATTTCACGGCGAACAACTCGCCTCTC 141710 28 100.0 32 ............................ TTATGGGCCGCCTGGGCATCGATATGAAGAAC 141650 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTAGTTCACTGCCGTATAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCACTGCCGTATAGGCAGCTAAGAAAGTATCGGTCAGCTAACACGATTACCCAATATCGTTCACTGCCGTATAGGCAGCTAAGAAAAGCCATCGAGGTTCAACCCGGCGATCACTCGGGTTCACTGCCGTATAGGCAGCTAAGAAATTCACCGGGGTCGTCCAGGCCACGTCAACACCGTTCACTGCCGTATAGGCAGCTAAGAAATGAAGAAATGTACAGGCTGGACGTATTGACAGGTTCACTGCCGTATAGGCAGCTAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 142560-142292 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800863.1 Pseudomonas aeruginosa strain HMSC064G05 Scaffold992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 142559 28 100.0 32 ............................ GTATCGGTCAGCTAACACGATTACCCAATATC 142499 28 100.0 32 ............................ AGCCATCGAGGTTCAACCCGGCGATCACTCGG 142439 28 100.0 32 ............................ TTCACCGGGGTCGTCCAGGCCACGTCAACACC 142379 28 100.0 32 ............................ TGAAGAAATGTACAGGCTGGACGTATTGACAG 142319 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTAGTTCACTGCCGTATAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCACTGCCGTATAGGCAGCTAAGAAAGGGGAGGGTTGCGCCAGGGCGGCGCGGGCCTCGTTCACTGCCGTATAGGCAGCTAAGAAAATCGTACCGCCGCGCTGCAAATCGAGGTCGCCGTTCACTGCCGTATAGGCAGCTAAGAAAATGATGGTTTTTCGGTTCTGTCGGACACAGTCGTTCACTGCCGTATAGGCAGCTAAGAAAGCGACGAGATCGAGGACGGCGACACTACCCTGGTTCACTGCCGTATAGGCAGCTAAGAAACTTGTCGCGGATGTACGCATCGCCCCAGAGGTGTTCACTGCCGTATAGGCAGCTAAGAAAAGCACCGGCGGCACCTTCGTCAGCAAACCGTAGTTCACTGCCGTATAGGCAGCTAAGAAATGGCACAGGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37430-37637 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800855.1 Pseudomonas aeruginosa strain HMSC064G05 Scaffold816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37430 28 100.0 32 ............................ TCGGCCAACAGCCTCCACAAGGGAGGGAGGGG 37490 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 37550 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 37610 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ATCTACGAGCAGACCGAGTTGAAAGGACAGGAGGTTCACTGCCGTATAGGCAGCTAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCACTGCCGTATAGGCAGCTAAGAAATTGACGGCCAATGCCGGCTTCGACTTAGCTCGGTTCACTGCCGTATAGGCAGCTAAGAAATGTCCGGTCCCGGAAAAGACCAACGCGGGAGTGTTCACTGCCGTATAGGCAGCTAAGAAATCTGTCACCTCCTGGGAGGCGGCCTCGGCCTGGTTCACTGCCGTATAGGCAGCTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTATAGGCAGCTAAGAAATGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37799-37946 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800855.1 Pseudomonas aeruginosa strain HMSC064G05 Scaffold816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37799 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 37859 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 37919 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTAGTTCACTGCCGTATAGGCAGCTAAGAAATCGGCCAACAGCCTCCACAAGGGAGGGAGGGGGTTCACTGCCGTATAGGCAGCTAAGAAAACAACGCCTTCGAAGACCTGGGCGGCTTCGTAGTTCACTGCCGTATAGGCAGCTAAGAAATCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCGGTTCACTGCCGTATAGGCAGCTAAGAAATCTACGAGCAGACCGAGTTGAAAGGACAGGAGGTTCACTGCCGTATAGGCAGCTAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : ATCTGTCACCTCCTGGGAGGCGGCCTCGGCCTGGTTCACTGCCGTATAGGCAGCTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTATAGGCAGCTAAGAAATGCAGGTCATAGGCGTATTCGAAGGACAGGCTGTTCACTGCCGTATAGGCAGCTAAAAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACATAGGTCGTCAAGAAACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 47516-47127 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800855.1 Pseudomonas aeruginosa strain HMSC064G05 Scaffold816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47515 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 47455 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 47394 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 47334 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 47274 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 47214 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 47154 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGTTCACTGCCGTGTAGGCAGCTAAGAAACAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTTGTTCACTGCCGTGTAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCGTGTAGGCAGCTAAGAAACAGTCGATCAGCCCAGCCAGCTTGGCGTCGTTGTTCACTGCCGTGTAGGCAGCTAAGAAAGTGGGGGCCATGCGGGGTGAGAGCCACTCCAGGTTCACTGCCGTGTAGGCAGCTAAGAAATTGAACCCCAGGTCGTTCTTCGCCAGCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 47768-47620 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800855.1 Pseudomonas aeruginosa strain HMSC064G05 Scaffold816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47767 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 47707 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 47647 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGTCGCCGCCGATGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTGGGTCAACTTCACGCCAGCACCGTCGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTAGTTCACTGCCGTGTAGGCAGCTAAGAAAACAGGGTGTTGTCGTTACTGCGCCAGGTTGGAGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAACCAAGTGCATTTCATGGCCCTGATGGTTCACTGCCGTGTAGGCAGCTAAGAAACAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTTGTTCACTGCCGTGTAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCGTGTAGGCAGCTAAGAAACAGTCGATCAGCCCAGCCAGCTTGGCGTCGTT # Right flank : CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTCACTGCCGTGTAGGCAGCTAAGAAATCCGGCACCGTTCATCTCCTCCTCGCTCCAGAGTTCACTGCCGTGTAGGCAGCTAAGAAACTGTAAGGTTCGACCCATCCCCTCTGGCCCGGAGTTCACTGCCGTGTAGGCAGCTAAGAAATTGCAGTTCGGGTCTTTCGGGCCTGGCATGTCGTTCACTGCCGTGTAGGCAGCTAAGAAAATGCAGATCAAGCCGGAGGACTACCTCAAGACGTTCACTGCCGTGTAGGCAGCTAAGAAATGATTGGTACCCTGATTACTGGTTACCTGATTGTTCACTGCCGTGTAGGCAGCTAAGAAATACGTGCGGTTCTGCGCCGCGCCGGATGACGAGTTCACTGCCGTGTAGGCAGCTAAGAAACTCGAAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 48315-47926 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800855.1 Pseudomonas aeruginosa strain HMSC064G05 Scaffold816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48314 28 96.4 32 N........................... TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 48254 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 48194 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 48134 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 48074 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 48014 28 100.0 33 ............................ CAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTT 47953 28 96.4 0 ...........................N | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGTTTTCGGAGCTAGTTCACTGCCGTGTAGGCAGCTAAGAAATGGGCGACGTGGTCAAGCAGCGAAGAGGCAGAGTTCACTGCCGTGTAGGCAGCTAAGAAAAAACCGGGGGCGCGGGGAGCTTGTCCGGCTCGGTTCACTGCCGTGTAGGCAGCTAAGAAAACGCTGAGCTGTAGAACCGGCTCGTTGCGACCGTTCACTGCCGTGTAGGCAGCTAAGAAAGCATCATGTACGGCAGCGAGATGCCGTCCGTGGTTCACTGCCGTGTAGGCAGCTAAGAAATGTATCCAGAAGGGGGCCGAGGTGATGTTCAAGTTCACTGCCGTGTAGGCAGCTAAGAAATGAGCGGCGAATTCCGCTGGGCACGTACAATGGTTCACTGCCGTGTAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCGTGTAGGCAGCTAAGAAACAGTCGATCAGCCCAGCCAGCTTGGCGTCGTTGTTCACTGCCGTGTAGGCAGCTAAGAAAGTGGGGGCCATGCGGGGTGAGAGCCACTCCAGGTTCACTGCCGTGTAGGCAGCTAAGAAATTGAACCCCAGGTCGTTCTTCGCCAGCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTCACTGCCGTGTAGGCAGCTAAGAAATCCGGCACCGTTCATCTCCTCCTCGCTCCAGAGTTCACTGCCGTGTAGGCAGCTAAGAAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 48801-48473 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800855.1 Pseudomonas aeruginosa strain HMSC064G05 Scaffold816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48800 28 100.0 32 ............................ TGGGCGACGTGGTCAAGCAGCGAAGAGGCAGA 48740 28 100.0 32 ............................ AAACCGGGGGCGCGGGGAGCTTGTCCGGCTCG 48680 28 100.0 32 ............................ ACGCTGAGCTGTAGAACCGGCTCGTTGCGACC 48620 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 48560 28 100.0 32 ............................ TGTATCCAGAAGGGGGCCGAGGTGATGTTCAA 48500 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : TGAGCGGCGAATTCCGCTGGGCACGTACAATGGTTCACTGCCGTGTAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCGTGTAGGCAGCTAAGAAATGGATGGTGATGTAGTAGGTGTCGCCGCCGATGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTGGGTCAACTTCACGCCAGCACCGTCGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTAGTTCACTGCCGTGTAGGCAGCTAAGAAAACAGGGTGTTGTCGTTACTGCGCCAGGTTGGAGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAACCAAGTGCATTTCATGGCCCTGATGGTTCACTGCCGTGTAGGCAGCTAAGAAACAGGAGCTGCTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //