Array 1 33257-34282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEZU010000013.1 Streptococcus dysgalactiae subsp. dysgalactiae strain SDSD4 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33257 36 100.0 30 .................................... GTCGTGTCATCAAAGTTTGACATGCCTAGT 33323 36 100.0 30 .................................... CATCAACTTCATGAACGTTATTGTCATAAT 33389 36 100.0 30 .................................... AAACATCATCATGACTGGTAAAGCTGGACG 33455 36 100.0 30 .................................... TTTGTGGTCGGGTGGTAATTTGACTTATGC 33521 36 100.0 30 .................................... TTCCTTTTTTCTAAATAAATCATCAATTAT 33587 36 100.0 30 .................................... AGGTCAACCACCACAAGAAAATATTAATCA 33653 36 100.0 30 .................................... TCCGAGATTCATCTTGTGGTAAATTTCGTT 33719 36 100.0 30 .................................... CAAAAAGTTAAGCAAGAAGTGGATGACGTT 33785 36 100.0 30 .................................... CTGGCAGGTTTATCACTAGGAGATGATATA 33851 36 100.0 30 .................................... CGCAGAGTTATCCAAGATTTGCAGCATTTA 33917 36 100.0 30 .................................... CCATTAGCGATTACTTATGCTTGCGAGGCT 33983 36 100.0 30 .................................... CATGGCTGACGTTCGTGCTGTGCATAACTA 34049 36 100.0 30 .................................... TGAGACGCAGTGTTACGAGGTCGCGTTGCC 34115 36 100.0 30 .................................... TTCATTTATCGCAAATTCTTTTAACATTAA 34181 36 100.0 30 .................................... TGTTTATAATTCTGTTGGACGTGATACTAT 34247 36 86.1 0 ............................TTT..TT. | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTAATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTAAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAACATCGTCAATGGTAACTTGAGAGAGAGGGATAAAGACCATATCCTTATGCCTTTCTATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTAAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGATTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGCTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATAACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGAACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCCGATTCAAGAGACTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 30145-28778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEZU010000010.1 Streptococcus dysgalactiae subsp. dysgalactiae strain SDSD4 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30144 32 100.0 34 ................................ CAGATAACCCAGTTGACTTGCGCAAGGTAGATTT 30078 32 100.0 36 ................................ AAATACTTTTAACATCCCTATCCCCCATTACCCGTC 30010 32 100.0 36 ................................ GCGGTGTATATTACAATAAGCAAAAAGGCAAATATC 29942 32 100.0 34 ................................ GATAGCTATATTGTAGGTATGGCAAGCCGTCTAA 29876 32 100.0 33 ................................ CACAACCTTAATCAGAGCCGCCCGTGGACTGAT 29811 32 100.0 34 ................................ TTTTTGATTAGGGTCGTAGTTAAAAAAACCAAAG 29745 32 100.0 33 ................................ CTGATTGCTTAATTATTGAAGTATAAAAAATTC 29680 32 100.0 35 ................................ ATCTTAATGAGCGTAAAATCGAAGCCGAACTTGGC 29613 32 100.0 36 ................................ GGTCATGATTGCCCTAAAAAAGTAAAAGAATGGTGT 29545 32 100.0 34 ................................ ATTTAAATCTCCAATCTTAATTTAAGTCAAGATA 29479 32 100.0 35 ................................ AATAATATAGTTGAAGGATATCGCCTTGTTATCTT 29412 32 100.0 36 ................................ GCTTCTTCAATATTCATCTCGCATCTCCTTTAAAAC 29344 32 100.0 36 ................................ TGCATATCCACTAGCAGTCGCATAACCTGCGTCCTT 29276 32 100.0 35 ................................ TTTGCAAATGTTTGAGGCAGGTGCAGGTAGTGTTA 29209 32 100.0 35 ................................ CCTTAAAGGTTAGCTTTGAGAAGTAAATCCATACC 29142 32 100.0 36 ................................ AATATTTTCTTCCGCGTTTTTCTTAGCGCTGAAGCT 29074 32 100.0 33 ................................ TATTAGTGGCTGATATATCTTTAAAAGTAGTTG 29009 32 100.0 34 ................................ GTAAAGGCGACAGATGAGCGATATGATCCAGATT 28943 32 100.0 35 ................................ ACACAAAGTTTTGGAAGGTGTTCCAAACGTTGATG 28876 32 100.0 35 ................................ TTCGATGATCTCAACCCGAGGAGCAACGAAAGGTC 28809 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.6 35 GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATTTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACATGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGTTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAACGTTTAGTGCGACTCGAGGTTTCACAGAAGAACATTGCTTGCTCGCGCAAAAATCACTTCAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTTTGCCATACGTTTCTCTATAAACTGCGTTATTTGGCGCA # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTGTCTTCTCCCCTCTCTTCCCCCTCACATATGCTATAATAAGCTTAATAAATGCATGGTAAAGGAGTTAGGATGGATAAGGTTCGGTATGGGATCGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATACGTCGATTGATGCCGTTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTACTGGCAGGCAAGCATGTTCTGGTGGAAAAACCATTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //