Array 1 1398149-1397042 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP022715.1 Actinobacillus pleuropneumoniae strain KL 16 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
   1398148	    28	 100.0	    32	............................	ATATTCATCCATTCCAGCCGTAGACATCTTTA	
   1398088	    28	 100.0	    32	............................	TTCTTTACTTTTTTTTAATTCATTAAACGCTT	
   1398028	    28	 100.0	    32	............................	AAGCCCCCACGTGAAACTGATTAACCGCTTGC	
   1397968	    28	 100.0	    32	............................	TAGCGACAAAATTCATCAGAATCACCGGTCCT	
   1397908	    28	 100.0	    32	............................	CAGGTGCTTTAGTTGTTTTTGAGGGTGGTAAA	
   1397848	    28	 100.0	    32	............................	TTGTGCCTTGGCGGATTGCTCAAGCGTTTGCA	
   1397788	    28	 100.0	    32	............................	AAAGATAAAAACGGGATAGTAAGCGTAACAAC	
   1397728	    28	 100.0	    32	............................	TAGCGATAAAATACATCAAAACCATCGTTCAT	
   1397668	    28	 100.0	    32	............................	CTGTTCCCTTGCAAATTGTATGCCTGCTTTAG	
   1397608	    28	 100.0	    32	............................	TTATGCTGATAAAATGACTCTTAAAGAAATAA	
   1397548	    28	 100.0	    32	............................	ATTTAAAGGGGCAGAAAATACATTTTGTAAGG	
   1397488	    28	  96.4	    32	.................T..........	GTTAGCGTCTTCTTTATCCCCTTCTCCTTTGC	
   1397428	    28	 100.0	    32	............................	ACAATAAATCAATCGCTCTACAATATCTTGCA	
   1397368	    28	 100.0	    32	............................	CGGTTTGTTGCTAAATCAGGTGGCGGAAAGCG	
   1397308	    28	 100.0	    32	............................	TCCAAGCAGTAAATAATTAGCGCCATCTATCC	
   1397248	    28	 100.0	    32	............................	CTTACGGGTTGGCTACGCCAAACCTTGACAAT	
   1397188	    28	 100.0	    32	............................	TATCCGATAACCTCTTCCTTAGTTTTGCCACT	
   1397128	    28	 100.0	    32	............................	TTGCCAATATCGCAAAATACGTTAAAGATCCC	
   1397068	    27	  89.3	     0	.....................C-.C...	|                               	
==========	======	======	======	============================	================================	==================
        19	    28	  99.2	    32	CTTCACTGCCGTATAGGCAGCTTAGAAA	                                	       

# Left flank :   TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAATCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA
# Right flank :  TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACTGATAAAGGCAATGAATCACTCTATTGGAATATTCCTATTGCCAATACCATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTATCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGTGGAGGAACACCGCTATTTAATGGGACGGAAGCGGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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