Array 1 720074-716182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVHL010000002.1 Mycobacterium canettii strain STB-K Seg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 720073 37 100.0 37 ..................................... TTTCTTGCGCCGGAACGGATTATGCCAGCCCCTGCGC 719999 37 100.0 35 ..................................... AAAGTTCTCGCGTGATGAGGCCCAGCTACTCACCA 719927 37 100.0 36 ..................................... GGCTAGACAGTAGCCGAAATTCGGCGGTTAGCTGCC 719854 37 100.0 36 ..................................... GGTCCCATAGCCATTTGGTCGGACAGGCATGCAGCA 719781 37 100.0 37 ..................................... GACGTCGCCGATGGTGATGTCGACCCAGTCCAGCCGG 719707 37 100.0 37 ..................................... GTCAAGCGCACATTCGTGGACGGCGTTGTTCTGCCGG 719633 37 100.0 36 ..................................... CCGTGTGCACGACCCAAGCTATAGTCGGGCATCAGG 719560 37 100.0 34 ..................................... CTGGGCCGGCTGGTCCTTGGCGAAGCAGTGCGGG 719489 37 100.0 35 ..................................... ATCAGTGCGCAAGCCGCCAGCCGACTGGTACGACA 719417 37 100.0 34 ..................................... GACGGTGCTGTCGACACTGTGATGCCGAGCGCTG 719346 37 100.0 36 ..................................... GTTGCGCCATGTCCAGTTGTCGTCGGTTTGTTGGCG 719273 37 100.0 34 ..................................... CCCACACCCAAGACCATCGCCAACAAGCACGGCT 719202 37 100.0 36 ..................................... AATCTTGTTGACGCCGGCGGCGCCGGGGGTGTCGGG 719129 37 100.0 37 ..................................... GGGAATTAGAACGGGTGGCACGCACCGCGCGAGGGGA 719055 37 100.0 34 ..................................... GGGCGAGGAGCAGCTCCAAAAAAAGCACGTGCAA 718984 37 100.0 36 ..................................... TGCCAACATCTCTTCACCTACTGCTAGGCTTCTGCG 718911 37 100.0 36 ..................................... TTGTCGGTCTCCTGTACGCGGGCGGTCGTTGAGGTG 718838 37 100.0 35 ..................................... TGGCCGAATGTCAATCATGTGCAGCGCCAACGGGA 718766 37 100.0 34 ..................................... GCTCGAATTTGAAGGACATAGATTTTGATGCCGT 718695 37 100.0 35 ..................................... GGTCGTCTCGTCCATGAAACGCGCTAGCGCGATGG 718623 37 100.0 37 ..................................... ATCCCGGGCCACTGGAAAACGCCAACTGGACCGACAG 718549 37 100.0 36 ..................................... GCCTCGGCCGCCCATCTGAGCATGAATAGCGCTGGG 718476 37 100.0 35 ..................................... GGTGACACCACACCAGATGTGGTTGAGTGCGAACT 718404 37 100.0 37 ..................................... GCCGAATATGCCGTAAAAGGCGGCGAATACGTTGATG 718330 37 100.0 35 ..................................... GATAAGTCGATGTCTATCAACTCCACGGGGACAAT 718258 37 100.0 34 ..................................... TCAATACCGTCAGGCAGGAGGGCAATGTAATGAT 718187 37 100.0 37 ..................................... GCTTTTCGAGTTTTGGCATGCTCGCCTCGTGCAGCGG 718113 37 100.0 38 ..................................... TTTGCTGAATTCGCACTCTGCGCGTTCGTGATGACGGG 718038 37 100.0 35 ..................................... CTCATTGGGGTCGCATTTGATGTGCAGCGCTGATG 717966 37 100.0 36 ..................................... GTCCCTGCGGTGGTGGACCGCTCTCCCAGGGCTGCG 717893 37 100.0 37 ..................................... AGACCGCCGCCATTCGCAGCCTGACTCAACATGGCGG 717819 37 100.0 35 ..................................... GACTGCGCCTATCCACATACCGTCGGCGCGGCGGT 717747 37 100.0 36 ..................................... ATCTCAGACACCCGGGCGCGCAAATGGCTGCTGGCA 717674 37 100.0 38 ..................................... CTGCTGCGGGTGGATCTATCGCGGCAGCGGGCTTGGGG 717599 37 100.0 36 ..................................... GTGCATACAAAACGGGATCGAATACCGCAATCAATG 717526 37 100.0 36 ..................................... ACGCTGTTAGCGGCCACCGATTTAACGGGCGCGTTG 717453 37 100.0 36 ..................................... ACCCCAACCGAGCACGGTACATATCAAGTCAACATG 717380 37 100.0 36 ..................................... CGGGGAATATTACGCGGCTGCCCGTCCTGGTGCACG 717307 37 100.0 33 ..................................... CGGACGCTCGGAAAAGGTAAGCGCCCTTTGGGT 717237 37 100.0 36 ..................................... ATATGTGGGGTGATGGCACTCTCTACCGCCGCGCCG 717164 37 100.0 36 ..................................... TTCACCTACTGCTCGGCTTTTGCGTAGAACTGGCGA 717091 37 100.0 34 ..................................... GGTATCCCACCGTTCGTAGTGCCGACCGACGGCC 717020 37 100.0 35 ..................................... ACATCGACGATGGCGCCCTGCGACCGGGACACACA 716948 37 100.0 37 ..................................... TTTTTGTTGGGGCGGGCGCCTATCCCGCCCATCGGCC 716874 37 100.0 35 ..................................... ATTGCGGCCGCATACCCATACAGTGACGTCGACGT 716802 37 100.0 37 ..................................... CTTGACGAAAGCTTTTGGGGTGCAAGCACCGTCGCGG 716728 37 94.6 35 .......G....T........................ CCAGGATGACGACGACCGGCTGGCGGCACAGACCG 716656 37 97.3 36 ............T........................ CGCCTAAGCCCGAGATGGGCGGCCAAGGCGAAAGAC 716583 37 97.3 35 ............T........................ CCCTGCGCAGACACCACCGCCTGCTCAACCTGCGC 716511 37 97.3 37 ............T........................ GTTATCCTTAGGTGGGAAGAAGAGTCAGGGCCTCCTT 716437 37 94.6 36 ....T.......T........................ CCCTCTACGTCTCGCAAAAGGTTCCCACCGTCGCGG 716364 37 97.3 36 ............T........................ CCGACAGCTCCGTCTCGACCTCGATGGTCGTGGGAT 716291 37 97.3 36 ............T........................ ATGTACTCGCGCACGATGAGCGCCTGGCGCCCGGGG 716218 37 94.6 0 ............T........G............... | ========== ====== ====== ====== ===================================== ====================================== ================== 54 37 99.5 36 GCAGCGGCGGGCCTTGCCCGCCGCTGAGGATCGGAAC # Left flank : TGCAGGCGCTTGTCCTTGCCCGGTACCTTCGTGGGGATCTGACGCACTATTTCCCGTACAGGACGACAGGGCGCTGAGGATGGAAATTCTGGTGGTCTATGACATCAGCACGGTATCGTCGGATGGCGAGCGCCGTCTTCGGGAGGTCGCCAAAGTCTGCGAAGGGTATGGCCAGCGCGTTCAGAAGTCGGTCTTCGAGTGCCGCCTGGAGCAACGTGAGATTCGCCTGTTGATTCATGACATCGAAAAGGTCATCGACCGAGCCGCTGATCGGGTGGCGATCTACAGACTTCGTGAGCCCTATCAACGTCATGTGGTGGCGCTCGGGCGCGGTCCGGAGGTTGACTGGCGGAGTCCGATTGTCCTGTGACCGGGCGGAACCCACCTAGACATGAAATCTGCGGACGATCCGCCCGCAGACTGGGCGCTCTGAGCACATGAATGGTAATTGACAAGTTGATAGTTGGCGCGGCCAAGCGGGAAGATACTGGTCGTGAAGA # Right flank : CAAGTCGCGCTTGTCGGCTAGCGCGTTGATGTCGGGGCAGCGGCGGCCTTTGCCTGTCAAGGGACGGGCACCCATATGGCCGTCACTGGGCAGTCTGACGTGGCCGCCTACGTTCTGGCTTCGCATGGTGTTCTCGGCGCTGGTAGATGCCGACAGCCTCGACACTGGGGAGCACTTTCGCCGCGACCGGCGGGCGTTTCCACAACGGACAAATGGGGCGATGATGGCACGCCGGGCACGGCGGGTTAAGTACCTCGGGTAATCTGATGTATACATCAGATACCGAGTGGCGTATATTTTGCCATGTGAAGCGGCTGCAAATCTATATCGACGAGGACGTTGACCGGGCGCTCGCAGTTGAAGCGCGACGGCGGCGAAAGTCAAAGGCGGCGTTGATCCGGGAGTACGTCGCGGAACACTTTCGGCGGCCGGGCCCAGACCCGGTCGATGCTTTCGTCGGATCGTTCGACGCTGGAGCCGATTTGTCCGCGTCCGTTGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGGCGGGCCTTGCCCGCCGCTGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGGCGGGCCTTGCCCGCCGCTGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.80,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 972655-970599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVHL010000002.1 Mycobacterium canettii strain STB-K Seg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 972654 36 100.0 37 .................................... AGGTCGATCGCGTTCAGTTCGTCTGCCGGGTCGTGGT 972581 36 100.0 36 .................................... GTTTGGGCGCACAGTGCTTCGTCACGCCAGTCCTCT 972509 36 100.0 37 .................................... AAATTCCCCAAGGGTGGGTGAACAGCCAGGCATTCAA 972436 36 100.0 34 .................................... TTCTTCTCGTGTTGCTCCTGGGTATGGCCAGGGT 972366 36 100.0 36 .................................... AGTGCGTCGGTGACCGCCCCGAACAGGCCCGGTAAA 972294 36 100.0 36 .................................... GCGGACGACGGTGAGCGACGCCGAGGATGGGTGGCG 972222 36 100.0 35 .................................... CAGCCGGTCAATCGATATCCCGCCGAGCATCTGGC 972151 36 100.0 35 .................................... GCGATCAGGCCATCACGGTACCAGGCGTCCTGCTG 972080 36 100.0 35 .................................... ACGAAGATGCGCCGCGGTTTCCGCCAACGCAGCGG 972009 36 100.0 38 .................................... GCCGCCGAACTGGGCGGGGCTCATATCACCATTTCCGC 971935 36 100.0 36 .................................... GACGGTAGCGGAATTTCTTGTGTGAACGTCAGGACG 971863 36 100.0 39 .................................... GGGGGGCGGTCACCGACGCACTCAACGACCTGATACCGC 971788 36 100.0 36 .................................... CGCACCATGGTGGCGCTGCTGCAGGCCAACGGCTAC 971716 36 100.0 37 .................................... CAGGGAAACCCGGCGCTGGCCGCCCAAATCGGCGCGG 971643 36 100.0 35 .................................... GCCTCTTTTGTGCGCCACTGCTCAAACGGCACCTC 971572 36 100.0 36 .................................... AGGCTCTTCAGGCCGCGATTCAGCACGGTGAGTGCA 971500 36 100.0 36 .................................... GATCATGTCGGCGAGGTCACACAACGCGTGCGGGTC 971428 36 100.0 38 .................................... TTGATCACGCGGACGGCCCCACCGTCCACGTGCACCAG 971354 36 100.0 36 .................................... GCCAACCCGGCTGGTATCACCAACTTCGTTCGGGAC 971282 36 100.0 36 .................................... GCGATCTCCCGGGCCGCCTGGGTTTCGTCGTCGCCC 971210 36 100.0 35 .................................... ACCCACCGGTGCCGTCGCGATCGGCGACACACAAG 971139 36 100.0 38 .................................... CGGTGCAGCTGCACCGGCAGGCAGGCGATCCGCCCCGG 971065 36 100.0 35 .................................... AAATCCTCTTCACCCCACAATGCTACACATAACTG 970994 36 100.0 36 .................................... TGCACGCATAGTGTCGCTATTGAGCGCGTCTTGCAG 970922 36 100.0 36 .................................... ATGTAGTGGCGCTGCAGACGGGCCAGCAGCTCACGA 970850 36 100.0 36 .................................... ACCTCGACAAAGGCTGGGCTGGATGCCAACACGCCC 970778 36 97.2 36 ..C................................. AACGCGGTGGTCGCTCATCACAAAATGGCGGTGCGG 970706 36 100.0 36 .................................... GATGTCGGCGCCGACCGCCCTACCGTGGGCCGACAG 970634 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 29 36 99.9 36 ATTAATCCGGTCATTTTGGCCGGACACCATTGAGGG # Left flank : AGAATTCGTGGCGCAGG # Right flank : GTCAAGGCTGTCGTCGATGAGTCCCTCGATCTGCCGGACTCGGGCATACCCACACCCGCCCAACACACCATCGCCGCACGTCGGACATCCGATCCCACCCAACACCAACCGGGACTCGACGCGGACAGGATCAGCCTCTACCGTCACCACCAGTGCCTCCAAGCACTACAGCGCGGCACCCCGCAAGCCAGCCAAGACTTCAGCGGGGTGCCGCGCACCCATCAGTTCCTCGTCACACTGATGGCGCACACGAACCAAATCAACCCCGTCAGCACACTGACGGCCGCATCGGCAGCCTCAAAGAAGGATGGTCACCCGATGGTCGTCACCCCGAGAGACGGTCAACAGACGCCCTGCCGCACGCACAGCTCATTGTCGACAGGTTTCATCTGGTCAAACGGGCCAACCAGACCGTCGAAGCGGTGCGTCGGCGGACCACCTGGGACACTCGCGGACGCCGCGGTCGCAAGGCCGACCCCGAATGGCTCAACCGGCGCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATCCGGTCATTTTGGCCGGACACCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 852-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVHL010000003.1 Mycobacterium canettii strain STB-K Seg_0_end, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 851 37 100.0 34 ..................................... GCTCGGAGGATGCTATGCCCGGACACGCCACCTC 780 37 100.0 34 ..................................... CGGAATCCGCCTACGGGAGCAGCGTCATCCTCCA 709 37 97.3 36 ....................................A AACCCAGCTCCGCGCCGTACAGGATAGCGGCAGTAG 636 37 100.0 34 ..................................... CTGCTCGGGCAGGGGCTGGCCACTGTCTTTTCGA 565 37 100.0 34 ..................................... ATGATTTACGCCGTTACTGTCGATGATGCGGCGC 494 37 100.0 35 ..................................... GCGCGGGCACGGCACTTTGCGTTCACCGCCGCCTG 422 37 97.3 34 ....................................A AGGTGTTGGCCAGCGGACGCAACGCCGGAAGCAT 351 37 100.0 36 ..................................... TTGGCGTTGTTGGGTGGCTTCGCGGTCGGTGCTGAT 278 37 100.0 36 ..................................... GCGGGGGTTGGCGTGCAGGGCGTCGAGGATGGCTTG 205 37 100.0 34 ..................................... ATCCGCTGGACACGATGGTTCTGCTGCCGCGGGG 134 37 100.0 35 ..................................... CTGCGACACCTGCGTTGCCGCGCTGCGCGCCGAAG 62 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 99.3 35 ATTAATCCGGTCATTTTGGCCGGACACCATTGAGGGG # Left flank : CTAGTCGGTGAGCTGCCTGAGTATGTGCCGATGGTGACGAGATGACGCGGCGCCGCTACTTGATGGCATACGACATCGCCGATCCGAAACGTCTGCGTCGTGTGTGCACCCTGATGGAGGACCATGGTGAGCGATTGCAATATTCGGTATTCCTGTGCGACCTCAGTGTTGCCGAGCTATCGGAACTTGAAGCCGCGGTCACCGCCGTGATGCACCTCGTCCACGACAGTGTCGTACGAATCGACCTTGGCCCAACGTTCTCACCCGCTGCAATACGACAGATCGGTCGTGGCCGCCGCATGCCTGCAGACGGACCGCAGATCGTATGAATCCGCGAGCAGTCATATGAGTGGTCAGATCAGGGGCAGCGCTCGCGACCAGGTCAGCGACGTCGCGGTGGATACCGCGTATGAGTGCCAAACGCAGCGTGGATGCTCGAATCATCACCGCTCGCGGCGGTGTGTATTTCGCCAGGTCAAAGGCCCACAATTCGAAGAGCC # Right flank : CCAGCCAAATCCCGTAATCCACACCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATCCGGTCATTTTGGCCGGACACCATTGAGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //