Array 1 57184-55579 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDH010000057.1 Salmonella enterica isolate 0253_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 57183 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 57122 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 57061 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 57000 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 56938 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 56877 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 56810 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 56749 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 56688 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 56627 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 56566 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 56505 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 56444 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 56383 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 56322 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 56260 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 56157 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 56096 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 56035 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 55974 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 55913 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 55852 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 55791 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 55730 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 55669 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 55608 29 96.6 0 A............................ | A [55581] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75297-73316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDH010000057.1 Salmonella enterica isolate 0253_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75296 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 75235 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 75174 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 75113 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 75052 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 74991 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 74930 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 74869 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 74808 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 74747 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 74686 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 74625 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 74564 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 74503 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 74442 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 74381 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 74320 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74259 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74198 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 74137 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 74076 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 74015 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 73954 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 73893 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 73831 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 73770 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 73709 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 73648 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 73587 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 73526 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 73465 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 73404 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 73343 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //