Array 1 774165-772939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKPJ010000001.1 Streptococcus equinus isolate MGYG-HGUT-01363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 774164 36 100.0 30 .................................... TTTCAATTTCATCAACACTTTCCACTTCAT 774098 36 100.0 30 .................................... CACCTAAAACTGACATTACTGCAGGAAATC 774032 36 100.0 30 .................................... CCGTCAATGTATGAAGTGTTATGTTTAAAA 773966 36 100.0 30 .................................... CGTCAAGAGTTGATGGAAATTGCAGGCGAG 773900 36 100.0 30 .................................... GACTACACCTGCGTGGGACGATCCCTATGG 773834 36 100.0 30 .................................... TGTTATTAGGTATTTCATTATCTTAGCTCC 773768 36 100.0 30 .................................... CGTCAAGAGTTGATGGAAATTGCAGGCGAG 773702 36 100.0 30 .................................... AGTAGCTAGGTGGCTTAAAACCAGCGTAGG 773636 36 100.0 30 .................................... AGTAGCTAGGTGGCTTAAAACCAGCGTAGG 773570 36 100.0 30 .................................... CAGACCATATGCCGTGCATTTATTTAATTC 773504 36 100.0 30 .................................... TAACGGCATTCAAGGGAATGCAGATGGTAT 773438 36 100.0 31 .................................... AAGCAAATTTGTATAGTATGATTCGAGCGAA 773371 36 100.0 30 .................................... TATCAATGATTCCTTGCATGCGTTTGTTAG 773305 36 100.0 30 .................................... TGAAATCAAGTCAAACGTAGCTCAACTGCT 773239 36 100.0 30 .................................... TTAAATACAGGCTTGCAAGCTAAGGTTTCA 773173 36 100.0 30 .................................... GAGCAAACGATGAAGCTCTATACATACGTT 773107 36 100.0 31 .................................... TGTTTTAGCGTGCGTAGTGCATAGGCCTTCA 773040 36 100.0 30 .................................... ATGTCAAATGAACTTAACAAGAAAACTGCT 772974 36 97.2 0 ................A................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCGAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGGTTTGGGGAATAAAATAATTAAATAAGGAATCATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGGAAAAATGGTCCACGAG # Right flank : TTGTGGCTACTAAATATGAATATAACAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATATGGGTCATAGGTTTGCTAGGTTAGATTGGCTTAGTCGTTCAAGTGGTCTATGGCAGACTGAGCTTCTTCGGCGGTGAATTTTGCGCCGTCTTCAGAAGTGAGTTGTTCGTAGATTTCATCTGATGACAAGTCTAGTGTTTTTTTATAACTTTTTGCTTTTTCCAAGGCAGCTTTTTTATAGTCTAATTTGGCATGGTCGATAGCGTACTGAGCTTGCTCAGCAGTAAATTTATCGCCATTTTCGTTAGACAATTGGTCGTAGATGCCTTGTTTTGACATGTGCATAATCTTATAATAGCTCTTTGCTCTTTTTAGCGCAGCCTTTTTGTAATTAGCTTTCAAATGGTCAATGGCATACTGAGCATCTTCGGCAGAATATTTTTCAACATCTGATGTCAATTGGTCGTAAATGTCTAATTTTGACATGTTCATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 775938-774773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKPJ010000001.1 Streptococcus equinus isolate MGYG-HGUT-01363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 775937 36 100.0 30 .................................... TCTTACTGTCTCTGGCTAGCTTCGCTATTA 775871 36 100.0 31 .................................... CAGCGTTTAGAGTGTCTGCTGAGCGCACATT 775804 36 100.0 31 .................................... AGCAGATTGGTAAGATGACACATCAATAAAA 775737 36 100.0 30 .................................... CTCAAACAGCGCACGCGACTCATGGTTTGA 775671 36 100.0 30 .................................... CAGTTCATCTTCATCATCTGGTGGAACAGA 775605 36 100.0 32 .................................... TTATTAAATTTAAAAACGACTGTGGCTACTCT 775537 36 100.0 31 .................................... CTATTGACCCGACTAATTTCACGACTAATAA 775470 36 100.0 31 .................................... CTCATAAATCTCTTTGCCATAAATGTCTTTA 775403 36 100.0 30 .................................... CTATCAATTGAACGAAGTGACAACACTGAA 775337 36 100.0 30 .................................... ACAGCTATAGACGTGTTCATTTTTTTAAAT 775271 36 100.0 30 .................................... GGTGGCCTATGAATCATCGGAGGGATATAA 775205 36 100.0 30 .................................... GTTGTCACTAGTCTGCGCTTCATGTCCAAA 775139 36 100.0 30 .................................... TTGAAACACGTTTTAATTTTAGGTATGACC 775073 36 100.0 31 .................................... GAATTACAATTCATCTATTTTGAGACTTGCA 775006 36 100.0 30 .................................... ATTGACAAACGATGAAATTGACCACTATAT 774940 36 100.0 30 .................................... TATGATAATTTCAGCACATTCATTACAATA 774874 36 100.0 30 .................................... TCACCTGAAGTCCAAGCTCCAGAACCTTTC 774808 36 77.8 0 ....G...............T...AAA...TCT... | ========== ====== ====== ====== ==================================== ================================ ================== 18 36 98.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGCTAGCTGCGTATCTAGATGAAGGACTTACTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACAGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGCTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTGGTCCACGAGG # Right flank : TAAAACTTTAGTTAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCGAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //