Array 1 404153-407660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063241.1 Pectobacterium brasiliense strain ZLMLSHJ5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 404153 29 100.0 32 ............................. GCATCATCCAGTTCTTTCTGTGCCTTTAGGTT 404214 29 100.0 32 ............................. CATGGGAGGCCTGCGCGGTGGATATTACCGAA 404275 29 100.0 33 ............................. GAGTTCGCAGCTATCGTTCAGCGCCACGGCTGG 404337 29 100.0 32 ............................. CAGTGTCACCGGTGCAACAAGGAGCTATCCAG 404398 29 100.0 32 ............................. AATTCCCATTCTGTTAAAGAGCGCGACATCAT 404459 29 100.0 32 ............................. CGCCAACGTCAGTATGAATCGGGCTGAAATGG 404520 29 100.0 32 ............................. CCTATCGTGACTCCGTTGACGTTCTCACTATC 404581 29 100.0 32 ............................. CGATGTATATGGCACGCTATCACTGATTAATC 404642 29 100.0 32 ............................. CATTTGCTTCTGCAGCTGGCATTAATCCAGAA 404703 29 100.0 33 ............................. AAAACATTTTTACCTCGCTGTTACGTTAACTGA 404765 29 100.0 32 ............................. AACAGAGTGCGCTCTGCCTCACGGCGTCGAAC 404826 29 100.0 32 ............................. AGCTTGACGCGATCCCACGTGACGGTAACGGG 404887 29 100.0 33 ............................. CAAACGCATTGAATGGGATCAGGATGAGAAGGC 404949 29 100.0 32 ............................. CTGGAATTCGTAATCACCGTCCCGCTCTGCTT 405010 29 100.0 32 ............................. TTACGCAATTTGAAAGATGTTGAAGCGTGTGA 405071 29 100.0 32 ............................. CTGTACCGTACTCATTTCTTTTGATTTGGCAA 405132 29 100.0 32 ............................. AACAGACTATCTTTCGGCGAGTCTGTTGGTAA 405193 29 100.0 32 ............................. CGCTCTCGACCTCTTCAGCATCATCAACAGAG 405254 29 100.0 32 ............................. GTTTCGGAATTCACCAGCGCCTCAGACGTTGG 405315 29 100.0 32 ............................. AACCATCACCTAAGGTGTTTTTAATAGACTCA 405376 29 100.0 32 ............................. AAGTCAAACATCACAGCGCAGCAGGTTAAGGA 405437 29 100.0 32 ............................. ACTATGGGTTGGACTCACCGATCCCACAGTCT 405498 29 100.0 32 ............................. CTGCCCGCGCAGCTGCTACCGAGACTAAACGC 405559 29 100.0 32 ............................. GCGACCTTCTCAAACATCACTCAGCAGGCCAT 405620 29 100.0 32 ............................. AATTTTGATGAATCACAGTTAACCAATATTCA 405681 29 100.0 32 ............................. GCGGAAGAGAGGCGATTGCACGCCTAATCGAA 405742 29 100.0 32 ............................. CTTACACACTCGTACTCATCAGAATCAATGCA 405803 29 100.0 32 ............................. TGATTGCCGTCCGGACGGGATTTAAAGCGCCC 405864 29 96.6 32 ...........T................. GCAGCATCGGGCCAGAGCCAGGCGTGCAGTAT 405925 29 96.6 32 ...........A................. TGGCGACAGTCTGGCGAAAACCAGCCCAGCAA 405986 29 96.6 30 ............T................ GACAAACAAGTCGCACTCTGCGGCAATGCC 406045 29 96.6 32 ............T................ AAAAAATCGAACTTCAGTCGGTGGCACACGTT G [406047] 406107 29 100.0 32 ............................. GTGCTTGGTAATAGTGGAGATTTCAGAATTAA 406168 29 96.6 32 ............T................ GCTAATCATGAATAGAAGTTCTCCACCAAAAA 406229 29 96.6 32 ........T.................... CCTGTCGTTCGCTCCCGTACTCGACGGAACCG 406290 29 100.0 32 ............................. AAAACATCTGGCTCCCCGCGCAAATCAAGCTG 406351 29 100.0 32 ............................. TATGGAAACCGGGCGAGTGTCTATTATCTGAG 406412 29 86.2 32 .A........TA....T............ ATAGGGATAAACTCAGGCCGGAAAAACGTAGC 406473 29 93.1 32 A............G............... AATTCTCGGTCTCACCGTGCAAATCCCGTCAC 406534 29 93.1 32 .A......T.................... AGAATAACGCGCCAGCGATTCATATTGATCCT 406595 29 89.7 32 .A........T.......T.......... ATGCCACAAAACATCCGTAATATGGTTAAACC 406656 29 96.6 32 ............T................ AGCGTTCCCGATACGCCACCGAATACGTCATT 406717 29 96.6 32 .A........................... CAGACCGAAGACCTCTCCGCTCAACTGGCTGT 406778 29 100.0 32 ............................. TTCGTGACGGTACAAGGTCACAGCATGGCGAT 406839 29 100.0 32 ............................. TCATTGTTGGCAAAAATCTGCATGGCGAACTC 406900 29 96.6 32 .............G............... ATGGAATCTACCGTTTCAGTGGCTACGTTACT 406961 29 100.0 32 ............................. GCGCTGGAGTATTACCGCCGCGTCTCTCAATC 407022 29 100.0 32 ............................. CCTTTTGCGCGGCCAGTGCGATTCATTGTCTT 407083 29 96.6 32 ............T................ TCTAAGTTGGAAGCGGCGAAGCGGGCGCGCAA 407144 29 96.6 32 ........T.................... AGTGGATCCATTGGATTATGGAGCGTAGGCAT 407205 29 96.6 32 ..............G.............. GTTGAGGATTTCAATGACTACACCGTTTTTAC 407266 29 93.1 32 .............T.A............. TTTTTGACGCCGTACAGGGTATCGCCTTCTAT 407327 29 93.1 32 .A..........T................ CGGTCTGAATCAGACATCATCCAGCACCTACA 407388 29 93.1 32 ........T.T.................. TATTCATCCAGATACAGGTTTCCAGTGTAGCT 407449 29 96.6 32 ..............G.............. TAAACACGAAAGTCATCGGGTAATTGCGTCGA 407510 29 93.1 32 ............TT............... AAAAACAACTTTGGCGTCGTGCTGCCCGCCAA 407571 29 96.6 32 .........A................... CATGCTGGTTAAGAATGAGAAGCTTAACGGGT 407632 29 89.7 0 .A...........T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 58 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCACCGCTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCCAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTAGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAGTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGAACCAAATCCCGCGGCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTCACGGTGATGTGCGATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCTGTTCCTGCCGGTGAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCAGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAAGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATCCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3829933-3830983 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063241.1 Pectobacterium brasiliense strain ZLMLSHJ5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3829933 28 100.0 33 ............................ CGCCGAGCCGCATCCAGTAGTCGACCGGCATCT 3829994 28 100.0 32 ............................ GAAGGGGTTTACGCGGCCAATCCGGGATTGTG 3830054 28 100.0 32 ............................ ATGATGAAAATGGATATCAGGCGGAGTTAGCC 3830114 28 100.0 32 ............................ TGTTCCAGAAAGCTGATCGCCCAACGGAGAAA 3830174 28 100.0 32 ............................ TGCATACACTGGTGTTACGGCGTACTGGCTGG 3830234 28 100.0 32 ............................ GCGCTGATTAACTGCGGTGTGGATGGCTACAA 3830294 28 100.0 32 ............................ ATGAATAGAGCGTGTTGCTGCTCACCCCCAGT 3830354 28 100.0 32 ............................ ATTATCTTTCGGTTCCGGCTTCTTGGCCTGTT 3830414 28 100.0 32 ............................ AGATGCTGAGCAACCATTTTCAGTGCGTCATC 3830474 28 100.0 32 ............................ ATTCCCGTCGACTATTTGCAGTTCAAAATGAC 3830534 28 100.0 32 ............................ CCCGGTCCTGTACATCGCCGAGCTAAAGAAAT 3830594 28 100.0 33 ............................ CGCGTTTCTCAATCCAGCGGCAAGGGCAAGATG 3830655 28 100.0 32 ............................ ATTAACCAGCGTCCAGTCTGGATGGATAAAAT 3830715 28 100.0 32 ............................ TGGATTGATAATGTCATCGAATATAGAAATAC 3830775 28 100.0 32 ............................ AGTCATGAAAAATGCCCCCAAAATTAATTTAG 3830835 28 100.0 33 ............................ TGACCAGTTTGCAAACATGATTGATGACCTGAT 3830896 28 96.4 32 .............C.............. ATGCGAGATTTTCTCAATGCGAAAGAAGAGGT 3830956 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATTTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAATGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //