Array 1 1052442-1055276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037892.1 Salmonella enterica subsp. enterica strain CFSAN087304 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1052442 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 1052503 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 1052564 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 1052625 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 1052686 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 1052747 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 1052808 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 1052869 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 1052930 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 1052991 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 1053052 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 1053113 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 1053174 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 1053235 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 1053297 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 1053358 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 1053419 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 1053480 29 100.0 32 ............................. ATCGTGTTTATAAAACAACGGTCAATACTCGC 1053541 29 100.0 32 ............................. AGTGTGTCGGTTTGCCGGGAGTGCCAAAGGGT 1053602 29 100.0 32 ............................. CCAGTTACCCCAACGAATATTAACGTAAGAAA 1053663 29 100.0 32 ............................. AACTTGCCCGGTTACGGGCGGGTTTCATATGT 1053724 29 100.0 32 ............................. CGCGCCCGGGCGATTCTCTGGCCCGTTGCGCC 1053785 29 100.0 32 ............................. CGGGAAACAATCATCGGGCAAGAAATCGACCG 1053846 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 1053907 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 1053968 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 1054029 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 1054090 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 1054151 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 1054212 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 1054273 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 1054334 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 1054395 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 1054456 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 1054517 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 1054578 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 1054639 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 1054700 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 1054761 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 1054822 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 1054883 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 1054944 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 1055005 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 1055066 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 1055127 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 1055188 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 1055249 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1071948-1074788 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037892.1 Salmonella enterica subsp. enterica strain CFSAN087304 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1071948 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 1072009 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 1072070 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 1072131 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 1072192 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 1072253 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 1072314 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 1072376 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 1072438 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 1072499 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 1072560 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 1072621 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 1072682 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 1072743 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 1072804 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 1072865 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 1072927 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 1072988 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 1073049 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 1073110 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 1073171 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 1073232 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 1073293 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 1073355 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 1073416 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 1073477 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1073538 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 1073599 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 1073660 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 1073721 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 1073782 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 1073843 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 1073904 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 1073965 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 1074026 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 1074087 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 1074148 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 1074209 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 1074270 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 1074331 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 1074392 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 1074453 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 1074514 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 1074575 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 1074636 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1074698 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1074759 29 96.6 0 A............................ | A [1074785] ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //