Array 1 163-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000105.1 Microcystis aeruginosa PCC 7005 Mic7005contig108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 162 37 100.0 33 ..................................... AAAACTACCGCTTTAAAGTTTATCGAGGGGGGT 92 37 100.0 37 ..................................... CAACAAGTCAGAGCATTTCGGCAGTACGATCTTTCTA 18 18 48.6 0 ..................------------------- | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 82.9 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Left flank : CGCTTTAAAGTTTATCGAGGGAATGTTTTCCTTGGCAATCTCTTTACTTTAGGG # Right flank : A # Questionable array : NO Score: 7.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.15, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 294-116 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01001073.1 Microcystis aeruginosa PCC 7005 Mic7005contig1076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 293 37 97.3 34 A.................................... AATACTGGTTGCGTTTTGCGGGGTTAAATACGGT 222 37 100.0 33 ..................................... GGTATAGGGAATGGATACGATTAAGCCTTATTA 152 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 99.1 34 TGTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : TAATTAGACAGAAGTTCTCTATGTGAACAAGAGAACTTTATCTTCTTTTGTTTTCAAAATGAGAATTGCTGGGTATCAATAAACTCCCTTGCTTTTT # Right flank : CCCCCCTTAACACTAAATTGAAAAGGCTCAGACCCGTGTACTAACCTTTCAGCAATTCTCATTTTAAGGTTTCATGACATTAAAACCCTTGCACCTAGAGGGGTTAATAATTCTTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 52-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01001079.1 Microcystis aeruginosa PCC 7005 Mic7005contig1082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 52 36 100.0 35 .................................... GTTGTTGTTGCTATCCTCTTTGCTTGCTCTAGGGT 123 36 100.0 41 .................................... AGCATTCTAGAAGAGTTTCTTGATCGAAAGACACCTCACAC 200 36 100.0 40 .................................... TGTAAGGTCACAGTTTTGAAACCAGCATCTTGAGCCGCTT 276 36 100.0 36 .................................... ACTCTAAGACCTAACAAAACATAAGCCGTGTTGTTT 348 36 100.0 39 .................................... TTGACAGTCTCAACGAACAATTGTTGGCTAGTGCTTACA 423 36 100.0 44 .................................... GCTGTGCCGGCAGCGTAGAAGGTGAATCGTTGTTGTGAATCCGC 503 36 100.0 46 .................................... AAGAAGATGCTGTCGATGAAATTCCCGATGGCGAATATTTTCGCTC 585 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================================== ================== 8 36 99.7 40 CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Left flank : AATAGGATTAGTTGGAAACAATTTATAACCAACACAAGTGCAACAGCCAGTC # Right flank : CAGAAAAAGGGTTTCTTTTAGAAACCCTTTTTCTAATAAATTGTGTCAAATATATCTTGACAAAAATCGATAAAAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1-171 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01001105.1 Microcystis aeruginosa PCC 7005 Mic7005contig1108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1 20 54.1 44 -----------------.................... GGTTCAGCGCTGAAATTTGATTATATATCCCTAAAATTAGGAAG 65 37 100.0 33 ..................................... ATCGAAAAAATACCATTTATCTGTCCGCTAACA 135 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 3 37 84.7 39 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : | # Right flank : GACTCAATTCGCGCATTGCGTGATAGCTGTCATGG # Questionable array : NO Score: 7.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.24, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 386-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01001345.1 Microcystis aeruginosa PCC 7005 Mic7005contig1348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 385 37 97.3 35 .......................T............. GTCCGTGGGGAATTCCCCACCAAAACCAGAATCGA 313 37 100.0 36 ..................................... TGAACATTATCGGATTCTTGAAGATACAACATCCAA 240 37 100.0 38 ..................................... CGGCCAAGTGTGGGTGGACGATCTTGATCTGGCCTATC 165 37 100.0 37 ..................................... CCATAATCTTGAAGCTGCTCGGCCAATTTTTTCAAGC 91 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 99.5 37 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : | # Right flank : CAATTGAAAAAGTGTCACAGTTGATATATGAGCAATGATTGTTCCAATTAATCTT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 1 1126-233 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01001269.1 Microcystis aeruginosa PCC 7005 Mic7005contig1272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1125 35 100.0 39 ................................... ATGGAACCCCATTCTAGGTCACTTGGGTATTGTGCAGCG 1051 35 100.0 35 ................................... TATCATAGAAAGTCGGGAAAGTTGCTGTTACAACT 981 35 100.0 36 ................................... TTTAGTTTCCTCGCTTTCTAACCCTCCTGTTCCGGG 910 35 100.0 35 ................................... TTGCGGAGTTTCCGCAATGTATACCTTCGTACAGG 840 35 100.0 38 ................................... TTCCAATACAGTATTTAATACGATTGGATTAATCTTCT 767 35 100.0 37 ................................... TCTGACAGGTTAGTTATTATGGGTTCTATAATGTATT 695 35 100.0 37 ................................... GTTTATATTACTGTTTTCAAAAAACAGTAATAGTTTG 623 35 100.0 38 ................................... TTTGAAAAACTCAAATCCCACTCCCCGGACAAGAACAT 550 35 100.0 36 ................................... CTTATTTGAACATCAAGGCTATCAGCAACAATGCTT 479 35 100.0 34 ................................... AGGTTGGCAACGGTTGCTGCTGCGGTTGCGGCTG 410 35 100.0 37 ................................... GTGAGTCGCGTGAATGGTTGATGAGTTGAGGATTAAG 338 35 100.0 36 ................................... AAGGTCCCCAACGTGCGAACAATTAAGTTGTCCCGT 267 35 97.1 0 .......T........................... | ========== ====== ====== ====== =================================== ======================================= ================== 13 35 99.8 37 CTTCTGACTTCCTCGGAAGTTGAATTAATGGAAAC # Left flank : CGTTCGCCGATCGTCGATTCTTTAGTTGTTTATCTCGTGAACTCTCAAATTCTCAATCTGGAAGATTTCACGCCGCCGGACGCGCGCGGAGGGGTTTACCTCTATCCCGATGCCCTGAAAAAATACCTCAAGCACTGGCAAGACCGACTGCAACTGGAAATGACCCATCCTCGAACGGGGTACAAGGTGAGCTACCATCGCTGTCTGGAGTTACAGGTCTGGGAATACATCGCCTGTCTGACGGGAGAGAGCGAGGTCTACCATCCTCTGCTTCTGTCCGATTAATCGGGAGTGGGCTTCTTTACTTTCCGTAGGGGTCAAGCGATCCCGCGAACCCCCATTTTTCCGTTGACCCCTACGGAGCTAGGACGAGGTAAGGGTTTGAGGCTTTCCGGTAGGGTAGTTATCGAGAAATCTTCGCGATTATTCGACCCGCCAGTTGACCCCCCCAGATTCGATGGGTTACAATCCTCTCGGAGCAAGGTTTTCAGAACCCCACT # Right flank : CCGAGTAATTGTCATTACTTTTTTACCGCCTGCAATTGGAATCGAGAAGAAACAAGCTCTTGAAGATGAAAGAATTCGTAATGCTATTGAAGGGAAATTTGGACAAGCTAAAAGAAGATTTAGCCTCAATCGCGTGATGGCAAAACTTCCCTCAACATCGGAAACAGCCATTGCTATTACTTTTTTAGTTATCAATCTTTCCACCCTGCTTCGGCAGGTTTTTTGGGCTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTGACTTCCTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 54-232 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01001354.1 Microcystis aeruginosa PCC 7005 Mic7005contig1357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 54 37 100.0 34 ..................................... AGGATTCTCTTTTGGCGGAGGTGACGGGGATGGG 125 37 100.0 34 ..................................... TATTGCAATCGATTGAAGCCTCCTTCAAGTCTTG 196 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Left flank : CCTATTAGGGATTGAAAGAATTCCGCCTCCTGATCGGCAAAAGACACCACCTCG # Right flank : | # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 235-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01001350.1 Microcystis aeruginosa PCC 7005 Mic7005contig1353, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 234 37 100.0 35 ..................................... TCGTTTAAGATTAATCCTCAAGGATTTATAATTCC 162 37 100.0 34 ..................................... GGCGAATGCGACCAAAAAACACTCGCAAACAATT 91 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Left flank : AAAAGAATTAGAAGTAGTCAATAG # Right flank : GTCATGTTGAGCATCGACAAAGACCCCAACTGGCTCAAGTTCCAATTAATCTTAA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 1007-544 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000314.1 Microcystis aeruginosa PCC 7005 Mic7005contig317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1006 37 97.3 34 G.................................... GGAGCAAAGCAAGGGAAAACGAATACTCCTAAGA 935 37 97.3 34 G.................................... CTAGGGGTTAACTCTTCCATTGATGCTTGCTTAT 864 37 100.0 33 ..................................... AGATCCTGTCCCTATGCCTGTCTGACCTATTTT 794 37 100.0 36 ..................................... TTATTATTGCTGTAGTCACAGTTAGGTCTTAGTCCA 721 37 100.0 33 ..................................... TACAAGGTGCTAGAATGGATTTGATCGGGAATA 651 37 100.0 34 ..................................... TCCTTGTCGTGTTCGGCGGTGGCAACAAGTCGGA 580 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 98.8 34 TGTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : GCCGTAAGGCGTTGATCACAGGATGTTTTTCAAAATCTCATTAAGCGCTCTG # Right flank : AAAGACACCCTACTGAACTGTTTCAGCTAAAATAGAGCAATAAATTTGAGCTTAAAGTCTTAGATTATAGAATTTATAGCATTTTTCTAATACACCAAATTAGCTGAAACAATCCACTACAAGAAATTAAGTTTATTACCCCTTCGGTGTGATAAAGTGGGAAGCGGAGATTGATGATAGGGTTGCTCATTTGTAGGGGCTGACCGATGAGGAAATAAAGATTATTAGGGGGGAGTAAACCATGAGTACAGAAGAGGAAATTCTCAATCAAATAGCAAACTTCACTTCCACGGAATGGAATATGTGGAAAAAACAACAAGAACAGAAATCATTACACAGGTTGTCTTTTCCAGGCTTCCATCGATTTTCAAATGAAAACTTTCAATATTTTGATTTCTCTAAAATAGATTTTCCTTCTAATGAAATATGGAACTGTGATTTCAGTAACACTAATTTAATTGAAGCCACCTTAAAATCTACTAAAATTTATCAAACCGATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : GGTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8329-7982 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000326.1 Microcystis aeruginosa PCC 7005 Mic7005contig329, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 8328 36 100.0 42 .................................... CCCTGTCGGGTTGGATGAGATTATTCAACCTAAATTGAAAGC 8250 36 100.0 40 .................................... ACGATAACTCTCGCGCAAAGTTGTTTGCGATCGGGAACTT 8174 36 100.0 39 .................................... CACGGGTTCTTATAGTTCCTTCTCTCCGTTGTAATACGT 8099 36 100.0 46 .................................... TTTACGCTATTTCTTTGGTGGAATTTATACTCAGCATAATGAGCAA 8017 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 5 36 100.0 42 GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : TTCATGCTTCAACCCAACCTACGTTCATTTTATATTTAATTCCACCCACCTACTTATAGATATTTCGACAAAATTGAAAGGCAGAAAAAGGGTTTATAAAGAAACCCTTTTTCT # Right flank : AGTACCCCTTGGAAAGCCTTATCGAGAGGGGAAGACAGACACCCAAATCGACGCACCTGCAATCCATAGGGTAAAAAGGTGGTAGTGGGGGGGGTAAAAGTCCCGATACCAAAGGGTAGAACCCTGACGGGGAGAGCAATCGACACACCTCAACCAGAGAATCGGGGTTTTGGGAGTCGGGGAGAGGCTGCATCGATTTTCAGCCAAGAGTTCTTGGACAAGCTAGATGATATAAATAGTTGGGGGTGGTTGAGGAGGAGAACCTCCCATCACCAAAACCCTAGAGACTGCTTCTTCGGAAATCCCATAGAAGCGTACATCATCCTCTTGAGGATTGACCCTTTCTACTACTTTAGCGTATAGTTTCCGCATCTGGTCGAGGTAAAAGGCAAAAGCTTTATCGAAATGTGTAATTAATTTTGCGCGCGGTACTTAACTTTGAACGGGATTATTTCGGCCAAAGTTTTTGAAATTTGCTCTCTTTACCATTATTCTCGTCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4021-3106 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000320.1 Microcystis aeruginosa PCC 7005 Mic7005contig323, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 4020 34 100.0 37 .................................. CGTTCAGCTCGAACTATGTCGCGGCTGCGGATCGCCT 3949 34 100.0 41 .................................. TTCCCCTAGTAGCAACCACTGGGACTACTCTTAAAGATACT 3874 34 100.0 39 .................................. AGTAGTAGAAGATGGTGAGTTTGATGGAGAGAGTAGCCT 3801 34 100.0 41 .................................. ATGGTCTTTTTGGGAATCTCGCCGTAATAGCCGCAGGAACT 3726 34 100.0 36 .................................. GATTTCCGTCAATCAGAGTCACTCGAATTTCTTGCT 3656 34 100.0 40 .................................. TGCCATCGGCGATTATTTATTACTTCATCTGTACCCTCCC 3582 34 100.0 41 .................................. CCACCAAAGCAAATCTTTTCTCCTTAGTTTCCCCATCCTCC 3507 34 100.0 39 .................................. GAATTCGCGAAATATTGCCCGGGGTGCGGCCAGTCCACC 3434 34 100.0 42 .................................. GTCTAATACTAAATTCAGAGTACTGGATTGTTGCCCGACGCC 3358 34 100.0 39 .................................. TTGGACAATTCTTCGTTTAATTCTAGATATATGCTTTCC 3285 34 100.0 39 .................................. GAACTGTTTCCCATTGATAACTTCAATCATGGTTTAACC 3212 34 100.0 38 .................................. TTTTCGGCTAATTTTTTACTGCACTTGTAGCGATAACT 3140 33 76.5 0 ...........T-...C....GC.....CTC... | GA [3133] ========== ====== ====== ====== ================================== ========================================== ================== 13 34 98.2 39 CTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : GAGCTAAACACAATACCCCCGATGCTTGGAGATTAATAAACGACAAAAACATTACCAGTGTAATGCCCTGGTCTATGGGTCTAGATGACCCCTTACAGGTTTATGATTGGGATGTCCGCAAGGGTTTAGCTTTTACTATTCATGAAAGATTTGAAGATGAATTTGACCTTGAAGACTTTGTAATGCCCTTCATTCATCCCCTAGTGCTACCTAAAAACTATACCTTCTGGTTGGATATGAGGGAAGCTATTAAATTTGGCAGATTGGGAGACCAAGCCTAGATACTGCAAAACCCCATTAACTGGGGTTTTTATTGATGGTACTAAGCCTTTTTAGGTTTAGGGGGTTTGGGCTTAGGCATTTTGGGTTTCTTACAGCCAGAACTTTTTTTCATGCCAAGTTAAATATAAAAGTGTCCTATTTTAGTTTGAGCGGGTTGACAAAAGACGGGTAAGGGTTTATGATGTGGAAATAGTGTTAAAGGAGCTTCCATGCCTACT # Right flank : AGACGATTTAAATGCGCGGGCAGCTTATCCTATATGGTAATGTTTAATTATATTCCCACAAAAGTTGCTTATGTCCTTACCTGAACTCCCTCTTCATCTTCAATTAACCCAAATGGTTTCGGGTTACTGGCTATCTCAGGCCATCTATGCTGCGGCTAAATTAAGTCTAGCCGAGCATTTAAGCAAAGGAGCGAAATCCTGTCAAGATTTGGCCTCCCTAACTGAGACTAATCCTGCTGCTTTATACCGACTGATGAGAGCATTAGCTAGTGTAGGAATTTTTCAAGAGACTGAATCTCAACAGTTTATACTAACTCCCTTAGCCGAACATTTATCTAGTGACCATCCCCGGTCAGTAAAAGCGACAGCAATTATGTTAGGAGAAGCCCCCCATTATCAAGCCTGGGGAAATGTGTTACATAGTATTAAAACGGGACAACCATCTTTTGATGATGTCTTTGGGATGGGAGTCTTTGAATATTTTCAAACTCATCCGCTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 5808-4751 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000320.1 Microcystis aeruginosa PCC 7005 Mic7005contig323, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5807 36 100.0 38 .................................... TTTTTGTTGTATATATGCCGTAGGGGCCTATATACACT 5733 36 100.0 38 .................................... ATCCAGTTGTGTTTTGCTCTTGTAGAAAAAGTAGTAGA 5659 36 100.0 36 .................................... ATTACTTTTTCCTCCCCAAGTCCTTTGAAGCTTTTG 5587 36 100.0 37 .................................... ATAAAGTCGGTAGTCTCAGAAAAATCACCAGCATTAT 5514 36 100.0 40 .................................... TTGTCAATCTCTTGCACTAGGGGACTATCCTTTTTTAACA 5438 36 100.0 37 .................................... AATGCTAATTGTGTCTATCATCGGTTTCCTTTGTTTG 5365 36 100.0 38 .................................... TACATAGCCATCTTGAGAAACATTTACCCCCAATTCAA 5291 36 100.0 35 .................................... TAATAACAAAAAATGCGGGTTCAACAGGTAGCCCC 5220 36 100.0 36 .................................... TGCATTATTCTTGACTTCTAACTCAAAGCTTAATCG 5148 36 100.0 36 .................................... TTTCGGTAGGAACTTCCCCCCAGTTAAAGGTTAAAT 5076 36 100.0 37 .................................... GCATCGGACTGCGAATAGACCACATAATATCCTTCAT 5003 36 100.0 36 .................................... CTTATTTCCCGGGCTATTTCCTCGCAGGCATACCAT 4931 36 100.0 36 .................................... CTACTTGTACCGGCATAATCCGAGTAGATGATTATT 4859 36 100.0 37 .................................... GGCTATTTTGCCCTCTAATTCTGATAATATCTTCAAA 4786 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 37 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : ATCAGCCTCATTTGATCCGCTAATCATGTTATTTTACGTTATTGCCTATGATATTCCCTGCGATAAAAGGCGTAAAAAAGTGGCTGATTTGCTGGAAGGATACGGCCAACGGGTTCAGTATTCAGTTTTCGAGTGTGTTTTAAGCAAATCTCTATACAATCAGTTAAGAGAACGCCTGCAAAAGCAAATCAAAGAAAACGAGGATAGTATTCGATTTTACCCCATCTCTGGCCATACTTTAGCACAAATAGAGACTTTAGGCGGTGTCCCGCTAACTAAACCGCCAAGTTCTACGATCATCTGATTCGGTATCATCGACTAGCGACGGATAGGGCTGGGAGCAGATAACCTCGATTTCTGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACTGTGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCCGAACCCCAATCCTGTTCGGACGTTTGCCTACCGGCT # Right flank : TTTGATGACCAAATGAATCTAATTAACCAGGATGAATAACCTAAACTTGACCGAAAAAGAATTTGATGAAGATGCTTTTGATGATGTTTATGATGCTGTCCCCAGTGTCATAAAGTACCTAAAACTTGTCAAATCCCTTCCTGCTAACTTTTGGGATGAGGTCAAACCTTTAGACCCTGAGAAACCGTATGGGCGGGTTGAGGGCTATGCTCTAAATTGGTCTTTTAATAGAGCTAAACACAATACCCCCGATGCTTGGAGATTAATAAACGACAAAAACATTACCAGTGTAATGCCCTGGTCTATGGGTCTAGATGACCCCTTACAGGTTTATGATTGGGATGTCCGCAAGGGTTTAGCTTTTACTATTCATGAAAGATTTGAAGATGAATTTGACCTTGAAGACTTTGTAATGCCCTTCATTCATCCCCTAGTGCTACCTAAAAACTATACCTTCTGGTTGGATATGAGGGAAGCTATTAAATTTGGCAGATTGGGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000443.1 Microcystis aeruginosa PCC 7005 Mic7005contig446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1 37 100.0 35 ..................................... AGGATCTTCAACGAGACTATATTTACCTTTGTTAT 73 37 100.0 36 ..................................... GAGGGTGAAGACCAGCGAGCGATCGCTACCACCCTT 146 37 100.0 35 ..................................... TCATTGATTGATCCGCTTCCCATTGGTGGCCGCAA 218 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Left flank : | # Right flank : TATCTAGTAAAGTTTGAAAGTAAAATAAAAAAAATGTTCCAATTAATCTTAACCCCTATTA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 1-251 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000446.1 Microcystis aeruginosa PCC 7005 Mic7005contig449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1 36 100.0 36 .................................... CTCGCTATAGCGCATAATACCTCCTAATAATGTCTC 73 36 100.0 36 .................................... CATTTACCAAATAGAGCTTGGTATGTAGTATCACCC 145 36 100.0 35 .................................... CAATCCCTAACTTGTTTAGGGCCGATGTGAGGTCA 216 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 100.0 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAA # Left flank : | # Right flank : GGATTTAATGTACTCCCATTGATCGGAAATT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 1-193 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000449.1 Microcystis aeruginosa PCC 7005 Mic7005contig452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1 37 100.0 40 ..................................... AATGACACAGATCCACTTGCTCCAATCGAAATCGAGGAAA 78 37 100.0 42 ..................................... TTCCATCGTTTCCGGTCCTTCCATCGTTTCCAGGCCTTCCAT 157 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 3 37 100.0 42 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Left flank : | # Right flank : CATTATCAATGCTGTACATAATAATTTCTTTTTCCCGTTCCAATTAATCTTAAA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 22-215 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000453.1 Microcystis aeruginosa PCC 7005 Mic7005contig456, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 22 36 100.0 50 .................................... GGTAGGTATCAACGTGAACAATCGGGCCAGGTTGCCTGTAACCTTCCACC 108 36 100.0 36 .................................... GTTAAGACGAAAGCCTTGATACGTATGGCTTTCAGG 180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 3 36 100.0 44 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAA # Left flank : CCACGATTACCAAAGGCTAAAG # Right flank : | # Questionable array : NO Score: 8.46 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 1-162 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000084.1 Microcystis aeruginosa PCC 7005 Mic7005contig85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================= ================== 1 18 78.3 49 -----.................. ACTGGCAAATACAGCCAATCCGAAACCTTAACCTCGTTCCAATTAATCT 68 23 100.0 49 ....................... ACAAACAATCTGTAGAGGATGGTACTGATGGTAATGTTCCAATTAATCT 140 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================= ================== 3 23 92.8 50 TAAACCCTATTAGGGATTGAAAG # Left flank : | # Right flank : GGAGATTATGCTTTTAAGGCTGTATCACCGCGATCGTTCCAATTAATCTTA # Questionable array : NO Score: 7.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:-0.20, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAACCCTATTAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 3484-3810 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000844.1 Microcystis aeruginosa PCC 7005 Mic7005contig847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 3484 34 100.0 38 .................................. CGGTTTACCGAGCCTCCCCAGTCTCTTCTTACTGCAGG 3556 34 100.0 37 .................................. CACATTTCTTTAAGTTGTGAGGTTGTCAGGATGAACT 3627 34 100.0 38 .................................. ACCCTGTAGATGAGTTTATAGTCGGCTTCCGTATGATT 3699 34 100.0 44 .................................. CGTGAGGTTGGTGAGGAGGCTAGAGTACTTGGAATAAAGTGATT 3777 34 97.1 0 ................................G. | ========== ====== ====== ====== ================================== ============================================ ================== 5 34 99.4 40 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAA # Left flank : GAGGAGGTTTATATTGGTAGTGCCGATTGGATGACGCGGAACCTGACTCGTCGCGTGGAAGCAGTGACACCCATCGATGAACCAGCGATCGCCAAGGAACTAGAAGAAATTCTCGGCATTATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTGCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAGACCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATCAGTGATCAGTGATCAGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGCAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGAAAATTATTATTAATTATGGCTTATTTTTCAGTATCCCAGGAAAAATCGTTGTACAATCCTTGTACAGCCTAGTTTTGCCAAGCTAGT # Right flank : CAGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCGAGATTATGCGTCAGTGGGGACAAAAATTTCAGAGGAACTTTAACCAGACTGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTGGGCATCGTTTATAATAGCCAATTTCCTGGTCCACAACTCAACTCGATCGATCTCGATCGAGTTTTCCACTGGCTACAAACCCCTCATAAGTAGGGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 670-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000088.1 Microcystis aeruginosa PCC 7005 Mic7005contig89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 669 37 100.0 37 ..................................... CTCTTTGTTTTGCTTACTTTTCTAGTAAAGATCGATT 595 37 100.0 36 ..................................... TTAACCCAAATTTTACAAGCGGCTTTAAGAATGACA 522 37 100.0 36 ..................................... GGATGGAAGATTGGGGAGCTACGGGATTAGTTTCTC 449 37 100.0 35 ..................................... AACCTGAAACTATAAAGATTGAATCTAATGGAGTT 377 37 100.0 36 ..................................... CATAACCAGCTTGTTCCAACTGAGTAAGTAGGGTAC 304 37 100.0 34 ..................................... CGGGGATGGATGATCAAAACATTTAAAAATCCTA 233 37 100.0 35 ..................................... TAAAGGACGAGTTTCTCCACTTCTTTGAATTACGT 161 37 100.0 35 ..................................... TCTAGTATTAACGGACGAAATTCTTTTCTCATGAC 89 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 100.0 36 GTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGACATTTCCGACGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGCAGTGGGTCATTTGCTGTATAATTGGTTTATTGCGAGTGCGGCGCAAACGAACCTTGAAAACCCCATAGCGTATGGCTTTTACCACTGGGCG # Right flank : CCCGTCGCTATTGAATCGTGGTGTAGCCATAAAAGTGTTCCAATTAATCTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 56-591 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPY01000091.1 Microcystis aeruginosa PCC 7005 Mic7005contig92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 56 37 100.0 33 ..................................... CATTAAGAGTGGGGGGAAGTGGACAAATAAAAA 126 37 100.0 38 ..................................... TTTTCAGTCCCGTCTGGGGGTGATTTGCTAGGGGTTAA 201 37 100.0 34 ..................................... TACCTCAAACGGGGAAGACTACGCTTTCGGGATT 272 37 100.0 33 ..................................... CGCGAAAATTGAAAGAATGGGAATGATACCAGC 342 37 100.0 32 ..................................... ATTTCTCCTCTGGCGTATTGATACCATTCCAG 411 37 100.0 35 ..................................... CTTCATCGGTAACTTCCAGATATAAGGCCAGAGTG 483 37 100.0 35 ..................................... CCCGATACTTCTGCTATGGTATTTGGCTGGCCAGT 555 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 34 GTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAAC # Left flank : CCCTATTAGGGATTGAAACGTGCCAAGACATTAAATCAACCCCCAATCAGATTACG # Right flank : TAACCAGATAACATTTTTAGTTTACTCTAAAAATAGTTCCAATTAATCTTAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //