Array 1 3990-3707 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQQ01000021.1 Streptomyces purpureus strain JCM 3172 sequence21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 3989 28 100.0 38 ............................ GCCCGCCGCCGAGAGGCACGCTGAGTCCGGGGGCCAGG 3923 28 100.0 38 ............................ CCCGGTCACGGAGCGGACCGCCACGGCAAGCGTCGCAA 3857 28 85.7 38 .......A.G..GC.............. CCCCGCCGCCCAGAGGCCCGCTGTGCCCGGGGTCCCGG 3791 28 100.0 29 ............................ CGCGGAGCGGCACGCTACGGCCCTGCCGG 3734 28 82.1 0 ..........CAG...C.....G..... | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 93.6 36 GCCAGGGGCCGGTTGAGGCCGTCCCCGC # Left flank : GGAGGAGTACGAGCAGCTCAAGGCCGAGGTGGCCGGGCTCGACGCCGACGACTCGGCGCTGGGGGAGCGGCACGAGGCCGTCCGCCGGGAACTGGCCGACGCCGAGGCCGCGTTGTCGGCGGCCCGGGAGGCGGCCACCACGGCCGAACGCCGCCGCGCGGCCACCCAGGCCCGCCACGACGCCCTCGCCCTGGGCCTGCGCCGCAAGGACGGCACCGGCGCGCTGCTCGCCGCGCGGGAACGTCTTGCCGGCCTCCTCGGCCCGGCCGCCGAACTCCTCGACGTCACCCCCGGCTTCGAAACCCCCGTCGCGGCGGCCCTCGGCGCCGCCGCCGACGCCCTCGCCGTGACCGACCCGGCCACGGCTGCCGAAGCGATCCGCCTGCTCCGCAAGGAGGACGCCGGCCGCGCGGTCCTCCTCCTGACCGGCGACCCGGCTCCCGTACCTCCACGCGTGCCCGCGCCCGCAGCGGAGCGGCCCGCTGCGGCGGGCGTCGCGA # Right flank : CCCCGCCGCGGGCGACAGCTCCGGCGGGCAGACCGCCGCCGAGCGGCCCGGCTCGTCCGGCGTCCCCGCCCAGGCGCCCCGGCCCGACGCGGAGGCCCCCACGCGCGCGGGGACGGTTCCGTACGTGGTCGACCTCGTCACCGGGCCGGCCGGGCTGATGGGCGCGGTGCGGCGGCTCGTACGGGATGTCGTCGTGGTCGGGACCCTGGAGGACGCCGAGGAGCTGGTGCGGGCCCGGCCCCAGCTGACCGCGGTGACCGCCGAGGGCGATCTGCTCGGTGCGCATCTCGCGCAGGGCGGCTCCGCCTCCGCGCCCAGCCTGCTGGAGGTGCAGGCGTCCGTGGACGAGGCCGCCGCGGACCTCGCCGAACTGGCCGTACGGTGCGAGGAGCTGGCCGCCGAGCAGCGCGCGGCCACCGAGCGGCGGGCTGCCGCCGCCGCGCTCGTCGAGGAGCTGGGGGAGCGTCGGCGCGCCGCCGACCGGGAGAAGTCGCAGGTCG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGGGGCCGGTTGAGGCCGTCCCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [13.3-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 85-1888 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQQ01000032.1 Streptomyces purpureus strain JCM 3172 sequence32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 85 29 96.6 32 ............................C GCGGGTCGCGGCAGATGTTGCACTGCTCCTGC 146 29 96.6 32 ............................T GTGCGCCGAGACCCGATCCGATCGCCATCAGC 207 29 100.0 32 ............................. AACTTCACCGCGATTACGTCGAACGCGTCCAC 268 29 100.0 32 ............................. CGTCGACCTCGAACATGGCCGCCCACAGGGGC 329 29 100.0 32 ............................. GCCAACGCGGGCGTCGTTGCCCTGCTCGCCCG 390 29 100.0 32 ............................. AGCGGCACCGTGACGCCGATGCGTCACAAGCA 451 29 100.0 32 ............................. ATGATCCGGCGGGCGAACCCGTTCCACCGGAT 512 29 100.0 32 ............................. TTCGAACCCGCCCCGCGCCCTGCACGGCCGTC 573 29 100.0 32 ............................. ACATCGGAGCGGCGGCGGACTATCCCAACGTC 634 29 100.0 32 ............................. CCATGGCGGCAGCCGTCGCCCGCCACTTCGGT 695 29 100.0 32 ............................. CCGCGCGGGTCGGACTTGTCGTCGGACCACTC 756 29 100.0 32 ............................. CCGCGCGGGTCGGACTTGTCGTCGGACCACTC 817 29 100.0 32 ............................. GTCCTCGAGGAGATCAAGGCCGCGCAGCTCCT 878 29 100.0 32 ............................. GTGGTCGCCGCGTACCAGTAGTCGCCGCCGGC 939 29 100.0 32 ............................. CTGGTGGTACATCGGGGAGGCGCCTTTTCTCA 1000 29 100.0 32 ............................. CCACGGGCGCATTACGTACGACCGGCGATGTC 1061 29 100.0 32 ............................. GCGCAGCAGCGGCGAGCGGTAGTCGGGTTGAC 1122 29 100.0 32 ............................. GACTCCATGACGCTCGGATCGAGGACCTCGCC 1183 29 100.0 32 ............................. TACCTGACCACTGGCAATCAGCGCTCGTGGCG 1244 29 100.0 39 ............................. CGCTAGAGGGAGACCTAGCCTTTAGCCTTCCACTTCAAC 1312 29 100.0 46 ............................. ATCAATTCCTGAACTACGGCTTCCGGGACTGCGTGGTCCCCTGAGC 1387 29 79.3 31 T..T....T..G.......T....A.... CCGTTGATCACGAGCTGGCCGGCGTTCGCAG 1447 28 82.8 32 .C.T.......G.....-........T.. CACCTGATGCCGGGCGCCGAACGCACGCAGGA 1507 28 82.8 32 A..C.-.....G.G............... CTTGCCTTCGACGACTGTCCCGGTCTCAGCGC 1567 28 82.8 30 .C.T...T......-.........C.... CATATCTTCGGCGGCATCTGGGACATCATC 1625 29 89.7 26 ...C.......G................T GCTCGTCGAGTGCGCTCATGCAGTTC C [1628] 1681 28 82.8 32 C.TT.......G.....-........... GCTCGGGCCTCGGCGTCATCGCCGACGTGCGA 1741 29 93.1 32 ...........G........A........ GAGCTGAAGCCGCAGTTCTTCCTCGACCAGCT 1802 28 89.7 30 ...T.G........-.............. CCGACGGAGCCCCGAAGCGAAGTTGCGGCC 1860 29 89.7 0 .C.T.......G................. | ========== ====== ====== ====== ============================= ============================================== ================== 30 29 95.5 32 GTGGTCCCCGCACAGGCGGGGGTGTTCCG # Left flank : CGGCCTCGGTCACGTTCTCACTAGTCATCGGTGCATCCTCCATGATCGGGAGTTACACCGAACGATTTACAGTCCCCAGGAAGAG # Right flank : GGTCGGCGCCTGGATACAGCCCCGTTCCAGGTGTGTTCCTCGGCTGGCAAGACGCACGACGAAACGCCCCGCATGGTTCAGCCCCGTAGCGTCCGATCAACCGGTGGTAGAAGGCAGAATCCCGAGGGCGGGTGACGCGTCGGCGTATTCATCAGAGCGAAAGGCGACGAGTACGAGGCCGTCGAAGTCAACCGGTGTACGGCGGCGCTCGCCAGCTGTCCGCAGTGCGTAGCCTTGCTCGTTTGACTCCGGGTGTACCAGCACTGCCGCGCCGGCTCCGATTGATGCACTCACCACGCGCCAGAGTTCGTCCCGCACTCGTGCCGACAAGGTGCCGACGTACAACCCCGGTGTGGGTTCAATCATCCAGCGGGTGAGTGCGCCTCGGACATGGTTGGGTACGGCTGTGGTGGCGAGGACGGTCATGGACGGCACGGTGTGCGCATCTCCCTCTGTTTCTCAGTCTGGTGCATCGGCAGATTCTTGATCGGCAGGATCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCACAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12065-13191 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQQ01000032.1 Streptomyces purpureus strain JCM 3172 sequence32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12065 29 96.6 32 ............................C CGGTTGCGTCGTGGGGCGCCTTCATCAGGGCC 12126 29 100.0 32 ............................. TTCCTGAAGGCCGTGCAGGGCGGCACAGGCGC 12187 29 100.0 32 ............................. TGGTTCCACCGGATCAGGCGGCCGTCGATGAG 12248 29 100.0 32 ............................. TGGTTCCACCGGATCAGGCGGCCGTCGATGAG 12309 29 100.0 32 ............................. CCCTCGTGGCGCTGATCAACGGCGACTTCAGT 12370 29 100.0 32 ............................. ATCAGGCCCGAGGTGAAGTTGGGTGGCCGGTG 12431 29 100.0 32 ............................. TGGTTCCACCGGATCAGGCGGCCGTCGATGAG 12492 29 100.0 32 ............................. TCGTCCTGTTTCTTCTGCCCGTTCCACCGGCC 12553 29 100.0 32 ............................. GGATGGTGGCTGCGTCCGCGCGGGCGGCCTGC 12614 29 100.0 32 ............................. ATCTCGGCGCTGCTCGGCAGCGTGGCCCCGCT 12675 29 100.0 32 ............................. TCGTCCTGTTTCTTCTGCCCGTTCCACCGGCC 12736 29 100.0 32 ............................. TCGTCCTGTTTCTTCTGCCCGTTCCACCGGCC 12797 29 100.0 32 ............................. TCCATCGGCCTGAGCAGCAAGACCGTCGGCAA 12858 29 100.0 32 ............................. CTCGGCGGCCGGTGGACCGGCGCCCGCGTGAA 12919 29 100.0 32 ............................. GGTCTCGGGTCCGGCCGCCGGGTGCGGCTGCT 12980 29 100.0 32 ............................. GTCCAGGCCGTAGGAACTCCTCATCGGGCACC 13041 29 100.0 32 ............................. CTGAACGAGGACGGCACCCCCGGCGCGAAGCA 13102 29 100.0 32 ............................. ATCCATTGCGTGATGACCACGCACGCCGTACC 13163 29 96.6 0 ...T......................... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTCCTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : GTCGCGATCACGCGCGTACTTCGCTTCCCCGAGGAAACCGCGATGAGCAGCCCGCGCCTTGAGGATCATGTCCTGGAACTGCGGTGTGATCTTGCCCAGATCGTGCAGGCCGGCCCAGAACATCACCGTCGCCCGCGCATCCGCCTCACTCAACCCCAGCCCCTCGGCCAGGCGTTGCCGCTGCCCCCTGGACAGCACACCGTCCCACACTGCCCCGCACACCAAAGCCGTGTCCACCAGATGCCCGATGACCGGGTAAGGCTCAACTAACTCGCCGGACTTACCCTGAATACGCGCATCAACCACAGGCGACCTCCTCAACAAAAAGCAGACCGCTGAAGTCCACCACACGGCACTGACAAAGCCCGCTCACACCAAACAGAGCAGCCACCACATCGTCTCTCTGGGGCATAAACGCTCTGACACAATGCAGGCATGACAGACAGACCCACCACAGGAAAAGAAACAGCAAAGGACTCCTGAAACCCCAGCTCACGAAG # Right flank : GCTCCGCAGTGACCAATTCCGCAGCGGCCTCTAGCTTGACTCTGTCGGTGATCTTGGAGTTGTCGAGGTCAGGTGCCCAGGGTGCGCCAGGATTTCGGCCTGAAGATCCCGCGCTGGTCGAGGTAGCTCTGGAAGGCGGTCGGTCGTCGGGAAGGGGGTGCCTTCTCGGTTGGTGGGAGACCGCTGAGGCGCTCGATGTTGATGGCGATGGCGGTCAGGACGTGCTGGACGTGGGCTTTGCGCTGTCCTCGGTAGCGACAGCGGCGCATGCCGTGTCCGTGGGCGAACTCGTTGACCGTGCCCTCCACCCCCGAGCGGACCGCATAGCGGGCCTTCCACTCGGGCGTCTGCTGCTCGGCACGGACGCGGAGTTGTAGGTCGCGGAGCTCGCGCGGGGGAAAGCCCACGGTGCGGGCGCTGTCGGCGGTGCTCGTGCACTGGGTGCGAGCCGGGCAGGGACGGCACTGGCTCTTGGTGAACCGTGCCACGATCAGAGGTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //