Array 1 434261-435216 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDU01000001.1 Companilactobacillus formosensis strain NBRC 109509 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 434261 36 100.0 30 .................................... TTATGCTAAGGCTAATTTAAGGTACTTTGA 434327 36 100.0 30 .................................... CATAAAGCAATTTATTGACCACAGCAATGT 434393 36 100.0 30 .................................... CGCCGCCCCGTTTCCTAGTGCTTTGATCAT 434459 36 100.0 30 .................................... TTATTTGAACCACCGTTAAAAAAACTGAAT 434525 36 100.0 30 .................................... CCCTTTTTAACGTCGTTCTTTGGTACCTCG 434591 36 100.0 30 .................................... TGGGGGTCGTTTTGGGAATCATCTATTCAA 434657 36 100.0 30 .................................... AAAGTGTATACGACCTGTCAACCGTGGCCG 434723 36 100.0 30 .................................... TATCGTCAACAAGGAAGTTAAGAGATTGCT 434789 36 100.0 30 .................................... ATACTCACACAAAATTGAGCGGTGGCGGTC 434855 36 100.0 30 .................................... CCAACGTAACACCGTCTGGAATAATATTTT 434921 36 100.0 30 .................................... CCATTACTTCAATATTTTTTTGGTCAATTT 434987 36 100.0 30 .................................... TTTTAAATGTATCGGTGGACTTGGCAGCCT 435053 36 100.0 30 .................................... CATCTTTAATATCGATGTAAACACTCTCGT 435119 36 94.4 26 ..................................CT AAGGATTCTTTTCTTGATACATATAG 435181 36 83.3 0 A...C..............A.CC....C........ | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.5 30 GTTTTTGTACCTTAAAAGATTTTAAAAGAGTAAAAC # Left flank : AGTTTCGATTGGAAAATACTGGTCTGCCGGTTTGGTTGATATTTTATAATCTAGATAGTTTTATTAGTTCTAAAGATATTGAGCCTTTTTTGATTGAAGTTAAAAAGTTAGTAAGAGAATATGATTTGAAGCTAATTTATTTAGGAAATGATTTGAATAATGTGCCACTTGATGCTAGTGAAATAGATAATGTTGTAGTATCTACCAATGAATTTCATCAATTGCTACCAATCGATGAATTAATGAGATCAATTCAATTGTATTATCCAAATGAATTGCAGTTGTCAAAAGATGAAATTGCACATTCTTTAAAGAGGATTGTTCCCTTAATTGGAAGTACTGAAAAAGTTTTTATATCTAACCAAGATTTGGTATTATTAAAAGTAATGAATGAGATTTTAGGCTATGAGACGTCATATGATTTAAGAACTCAATCATTAACAGATGCAGAAACCAAATTTTTGGAAGATTAATTAACGGATTAAAATTTTGAGTTTGAG # Right flank : CTCCAAAAAGACTAGATCAGGTGGAATCTAGTCTTTTTATTTTGGAGAAAAAGTGTCATTAAATTTAATATTATTACATTTTCTCTAATTAAAATTAACTTTAACCATAAATACCTATTGCCCAAATTAATATTCTCGTTTATGATAGTCTCAAAACTTTCCAAGGAAGAGGGATCACTATGAAGGCAATTTTGACAGTAATTGGTCATGATCACGTTGGTATCGTGGCTAAAGTTTCAACTAAGTTGGCTGAATTGAACGTTAATATTATTGATATTTCGCAAACTTTGATGCACGAGAATTTTACAATGATGATGATGGTAACGCTTGATAATTCGACTCAATTCGACACAGTTCAACAAGAGTTGGCTAGTCTTGGTCAAGAAACCGGTTTGGATATTCGCATTCAACGTCAAGAAATTTTCGATGCGATTCAAAAACTTTAGGAGGTCAATGATGGAAACTAATTCGATTTTAGAAACAATCCAGATGGTCTCGGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACCTTAAAAGATTTTAAAAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 37385-37884 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDU01000008.1 Companilactobacillus formosensis strain NBRC 109509 scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 37385 37 97.3 29 G.................................... TTATAACCTTCAAATCCCTTTTCAGATGG 37451 37 100.0 29 ..................................... TTATCTTAGTAAATGACAGCGAAACAGCA 37517 37 100.0 29 ..................................... AATATTGTAGCTGTTCGAATGAAACATCG 37583 37 100.0 29 ..................................... AAGTCGTTAGTGAGCTGTAATAACTCTGT 37649 37 100.0 29 ..................................... CGGCTCTATTTCTTTGGGGCTAGTGATAA 37715 37 97.3 29 ......................T.............. TTCTGAAATACCACCAGAAACAGTCACAT 37781 37 91.9 29 ......................T...G.......G.. AATTTTATAGTTTAGAAATAGCGATAGAG 37847 37 78.4 0 ..........A..TA......T.....T..GG....T | T [37854] ========== ====== ====== ====== ===================================== ============================= ================== 8 37 95.6 29 AGTTTTAGAAGTAAGTCTTTCCATTTACTTAAGAACC # Left flank : TGATCTCGGTTCATTTAATCTCAACGCAAGCAATCAAATGAAGATAATCCTAAAAAAGATAATCGAAGATTCTCAAATAATGCTTAATGAAATTGAAAAAGTTAATACCGATTTAAATAGCGTTGTTTTTGACTCCATTACTAGATATTCGTTGCCGTTAACCCTTGATATGTACGCCAATTACGAAAAACTTTTAAAGTCAAAAGGCATCAAGATTGATTCTAGTAACTGGGCCAATTACTGTGATAAACTTATGGATGTAATCAGTTTTTATTCTGATTTCACTAATAAAAAATTGCTTATTTTTAATAACATCTGTCGTTTGTTAAACGTCAATCAGTTAAATGAGATACATACTTATCTAAAATCCGTTGATTTAAAGCTAGTTTCTTTAGAATCTTATCCTATGATTTTTAAGGAGGAAAAACTAAATGCTAAAGTCTATTCAATCGATAATGATCACGTTAGGTTTGATTATTAGAAGTTGATTAGAAAACAAC # Right flank : TTGCTATACTTGTCCTCGTTAAGAGATTCAGATCAATAAATCATTTTTGGTATACTTACAAGTACGTCATCTCAATTACTTGTTTTAGAAGTAAATCATCTCAAATAAAAAGCTCTAGTACAGAATCCCAAACGATTCCAATACTAGAGCTTTTCATTTTTTATCCTAAACTCTTTAAAACATAATCACCCAAGGTCCGGACACGTTTCAAATCATCTTCATCTGGATCTTGGTCAATCTTCACGGAATCAGCAACTTGTTCGCCATTACTGGAATTCAGTTGCATTGTGAAGTAATCTACCGCACGACCAAAGTGAATGTGTCCTTTGGAACTTGATCCTAACACCGCAAATTTAGTTCTTTCTAAGTCAATATCTTCCAAATCTTCATAAAAATCTTGGGCTTCTTCTGGCACTTCACCATCATTGTAAGTATAAGTATCGACAATCACAGCATCGTAACTAGAAATTTCATACGCATCAGTATCAATCATTTGTTCT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGAAGTAAGTCTTTCCATTTACTTAAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //