Array 1 2464-2792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPH01000139.1 Methanosarcina mazei strain 3.F.A.2.7 scaffold96_1_size16476-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2464 37 59.5 36 TGGTCTCC.TCTTTA.A.................... TTAAGATGACCAGCGATCACAGTTTTCGTCTCTGCC 2537 37 78.4 35 .G..G...GT.GCT.....G................. CTATTTCCCTATACCTTTCTCACTCAAAACCATTA G [2546] 2610 37 100.0 35 ..................................... TCAGAAAGTTCCTGCATCGAGTCTACCCATGCATT 2682 37 86.5 37 ....GC..G...................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 2756 37 81.1 0 ....G.T.A.........T........A.....T..T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 81.1 36 ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATAGGTCAAACAATTAGAGCAATAAGATATCATTTAGGTGAGTTAGAAGCATGTTGGTTACTGTGTACAAGAGAAACAAAAGAGAGTGAAGAGCTAATAAATTACTTTATAAGAAAATTCTCTAAGAAAACGGTAGACATCCAATCAATCGAATTAATAAATTCTTCAAAAATTGGTGATACTTTTAAACAAATAAATGAGATATATATAGAAAAAATAAAAGGAGTTGGTTTAAAAGAAGGAGAGGTCATAGCAGATTTGACAGGAGGAACCGCGGTTACGAGCTGTGCGATGGTTCTTGCCTGTGTACCTATAAAAAGAGACATGGAATATGTTCTTCAAAGTACATATGATCTAATAAAAATAAAAGAAAATATCTCTGAAATAGTATTTGATAGATAATTGTTAAACAGTTAAGTTCGAAGTTGCTTAGAATTGGCTAAAAATAAGAAAGATAACTCTTTAAGAAATAGTTGCCACGAAATAAATAGTGAGATGCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.05, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5157-12770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPH01000059.1 Methanosarcina mazei strain 3.F.A.2.7 scaffold83_1_size12932-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5157 37 94.6 36 .....T............T.................. TACTCTGTAAAAATCCCCCCTTTTGGAGCGAAAGCC 5230 37 94.6 36 .....T............T.................. TAATCTATCGAAAATGAGGTTTTCCATGAATCTGGT 5303 37 94.6 36 .....T............T.................. ATAAAGGTAACAATTGGGGGATTTACTTAGAGCTGT 5376 37 94.6 36 .....T............T.................. AATTGTTTCTCAGCGCATTCCCGCGCTTTTCTGATA 5449 37 94.6 35 .....T............T.................. TTCATTGTTAATTCTCCCGCGCAGGATCATATCAG 5521 37 94.6 35 .....T............T.................. TCCCCCCATAAGAATTTCTTAGTTTCAGGAAATTC 5593 37 94.6 38 .....T............T.................. TGACCGAGTAGTGTACGAGTATTTGTAAAAAAAATATG 5668 37 94.6 36 .....T............T.................. CCAAGCCTGATTATGAGGTAAACTGGCATCACCGGC 5741 37 94.6 39 .....T............T.................. ATAGATGCGGATCGAAGTCTTCTACTTTTATTACTTTCG 5817 37 94.6 35 .....T............T.................. TTTGCAGGCTGATAATAGTGGCGGTGCAAGTATGC 5889 37 94.6 38 .....T............T.................. ATCAGAAAACGCTTTTATTACGCGGGTTTTCAGATCGT 5964 37 94.6 37 .....T............T.................. CTCGGCTTTCACTCGGGCGCAAAAATACCCCTATATG 6038 37 94.6 35 .....T............T.................. CCGGGAATGTGACGGTCAGGGAATACGGCATTTTC 6110 37 94.6 38 .....T............T.................. ATGACGATCGAGAAGTAATGCTTACTATTCCTGAACAG 6185 37 94.6 35 .....T............T.................. TTGAGAAAAGTGAGTTGATTAAGGTATTATCAAAT 6257 37 94.6 36 .....T............T.................. TGCCGTCCTTTTTCGGGACAATATGAACAACGTGGT 6330 37 94.6 37 .....T............T.................. ACACACGAAAATGTTGTGCCGATTGATAATCCCTGCT 6404 37 94.6 33 .....T............T.................. AGATCGCTGCCTGTTCAAAATCATCGAGATCAT 6474 37 94.6 35 .....T............T.................. CTTATTAAATTGAGGAGAATTACCACTACTGTACC 6546 37 94.6 37 .....T............T.................. ATGTGCATGTTCGGGCTTGCTTTTCATGCTAATATAC 6620 37 94.6 37 .....T............T.................. ATAAGGTATGCAGCAAAGTCGTATTCTGTTTTTGAGA 6694 37 94.6 38 .....T............T.................. TTCCACGACCTGCCGGAGGGTATCGGAACCCGGTTTGA 6769 37 94.6 37 .....T............T.................. GGAATTTTCAAAAGCTCATCTATATTCGTGAATCCCG 6843 37 94.6 34 .....T............T.................. GCAAGTGTAAAAAGGGAGTGGCTAATCAGTTTCG 6914 37 94.6 36 .....T............T.................. TACCACCAGTTTCAACATTTTGGTTCGAACCGCAAA 6987 37 94.6 35 .....T............T.................. CTATACGGATATCATCAAATGACGCAGGAGAAATA 7059 37 94.6 36 .....T............T.................. CCCGGAAGGCTCCCTGCATGACCACAGGGACGATGA 7132 37 94.6 34 .....T............T.................. CATCCACGAAAGAAGCTTCAGAAGGTACGTATCA 7203 37 94.6 36 .....T............T.................. CTGTCGATATATACGGGAAAAAAACGGCTACCACTA 7276 37 94.6 35 .....T............T.................. AGCTTATATTCCTCGTATTCACATCCCCATTTCTC 7348 37 94.6 36 .....T............T.................. CATGAGGGAAGCGGACGAGGTTAAATATCTGAATGG 7421 37 97.3 34 .....T............................... TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7492 37 97.3 36 .....T............................... CTAGTATAAAAAAGTTTTGAGTAGAGAAGACTTAAT 7565 37 97.3 37 .....T............................... ATTTCTCCACCCTGTAACGTTGTTGCACCTGCAAATT 7639 37 97.3 37 .....T............................... ATGTCTTAAATCGCCTTAGATTTGTTCGTACTTATTA 7713 37 97.3 34 .....T............................... TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7784 37 97.3 38 .....T............................... GAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT 7859 37 97.3 35 .....T............................... ACCTCATTGCAGATAAATGATTTAGCCCTGTAGAG 7931 37 97.3 37 .....T............................... GGGTATGAAATTGACCAGGAAATCCACAATGTTGTTG 8005 37 97.3 38 .....T............................... TTTATAGAATTACATACATAAGTGAGTGTAGCGAACGT 8080 37 97.3 35 .....T............................... TAACAGTCCTCTATCTGGTTGTTTTCAAAAATCGT 8152 37 97.3 36 .....T............................... TAAAAAATACACTCGAATGCATCAAATTATACTGAG 8225 37 97.3 36 .....T............................... TGGTGGAAAGGAAGTTGCAAAAAAACTTGGAATTGG 8298 37 97.3 36 .....T............................... GCTACGATTTCACTATACAATTCCTCTACAGTCTGC 8371 37 97.3 33 .....T............................... TTATGATGAGTGTGAGACAAAAACGGATACTGC 8441 37 100.0 35 ..................................... ATTTATTACTTCCCATTCCTCAGAAAACAGTTCAA 8513 37 100.0 38 ..................................... TAAACCAGTCCCGCGATTACAAGCATCGAAATGATACA 8588 37 100.0 36 ..................................... CGAAGTTAAATGATGGTGGGTTGAAGTTTGACGGTG 8661 37 100.0 37 ..................................... TCCATATGCCCCATCTGTGCGCATATAATCGCATATT 8735 37 100.0 34 ..................................... CTACACTCTGTGCGTTTGCGCTTGTTAAATTCGC 8806 37 100.0 37 ..................................... AGATACGCTGCCCAAGAAGCCCCACCTGCCCCTGCAG 8880 37 100.0 37 ..................................... AAATCTATACTAACCCAGCCACACTTTAGCCCTGCAG 8954 37 100.0 37 ..................................... TAAGCTACTATTTTACCTTGTCTGACTAAATCTGCAT 9028 37 100.0 35 ..................................... TTCAATGATCTCTACTTTTGCCGGGAAAGATTCGT 9100 37 100.0 36 ..................................... AAAAGCGACTTGCATATACTACAGAGCCGGTTCCGG 9173 37 100.0 36 ..................................... TAATTTCATCATGCCCACAGGTTGCAATGGTGTCAA 9246 37 100.0 35 ..................................... TGGCCTCGATCTCTGCTGTAGACCCCTTTTCCTCT 9318 37 100.0 38 ..................................... TAACCGGCATACAGAGCCATTATTAATTGTACCAAAAA 9393 37 100.0 33 ..................................... CAGGGGCGAATTCGTCTTTTACCGTCGGGACAA 9463 37 100.0 36 ..................................... TGCAAGTAAATTACGGTGGAAGTGTTGCAGTTTCTA 9536 37 100.0 34 ..................................... TGACTGAGAGACAGAGGAACGAAATTAGAAAAAG 9607 37 100.0 35 ..................................... GGATTTATCAAGGCGTTAACAGATACAATATCCAT 9679 37 100.0 37 ..................................... TTAATTTCGCGTATATCGTCTATAAAACTTTTCACAT 9753 37 100.0 37 ..................................... AAGGTTTATCTTTTTCCTCAATGTTTCAAAATGTTTT 9827 37 100.0 37 ..................................... TCCTTGGCTACTTCAAATTCAGTTTGTAGTTTATTAA 9901 37 100.0 37 ..................................... AAAACGTTATCCCACTTTTCTTTGGTGATTCCATAGG 9975 37 100.0 38 ..................................... TCAATCACACATTCTTTAAAGTCTTCTATCGTAACTTT 10050 37 100.0 36 ..................................... TAAAGTTAGATGTACGTGGCGCATAAGATACACTTC 10123 37 100.0 36 ..................................... GTTTTATAGTTGTTACTACTATAATAATCACCTCTA 10196 37 100.0 38 ..................................... TTCATTCCTCGAAGCTACAAACACAACAAATCTAAATT 10271 37 100.0 36 ..................................... CCTCGCTCTTGCCGGATGGGACGTAAATGAAATCAT 10344 37 100.0 37 ..................................... AAAACTCCTGCTTCAATCTGTTCGGGGGTTGCTACGT 10418 37 100.0 38 ..................................... CCTCGTTTCTTTTTTTTGAAAATCCCAGATTATGACGT 10493 37 100.0 34 ..................................... TTCTCAGGGAGCGCGGAGGCACAGCGAGAAGACC 10564 37 100.0 34 ..................................... TTAAGAAGTCTGAACCTGTGGAGCAGTTGAAAAA 10635 37 100.0 33 ..................................... AAATTGGCGATTTCTTTAGAGTTAAAGGTAAGA 10705 37 100.0 37 ..................................... ACATAGTCATACATGCTGTCATAGAGGTTCACGTATC 10779 37 100.0 34 ..................................... TAGCTATCTTAGCTATCTTTTCGGCTCGTTGGAA 10850 37 100.0 36 ..................................... CATTCAACGATATTTACAAGCCTAGTGTAATCCCCT 10923 37 100.0 35 ..................................... AACCTTCTACAAGATAATCCAGCCACATTTTTTTA 10995 37 100.0 34 ..................................... CCACCTTGTAGGTAATAATCTTTCCGATTACTAC 11066 37 100.0 35 ..................................... TTCCAAGAGCCGTGTAACTGCATGTTGCGGCTTTC 11138 37 100.0 33 ..................................... TCCCTCCTTAAGTTGTCACCGTTCCGAGTCCAA 11208 37 100.0 36 ..................................... TTAAAAAAATGTTCTTTCTTGCAAATCCGGTTAACT 11281 37 100.0 37 ..................................... GTTCTCCTGATTCGTTATCTATGCGATGTAATACACA 11355 37 100.0 37 ..................................... TTATGGTGATCCAGAGAAGGATATTCCGGCGAAAGAG 11429 37 100.0 36 ..................................... TATTCATGCTTCAACTTCCTGCGTTCCCTTGCTCCA 11502 37 100.0 36 ..................................... ACCCTGGGTCTTCTGAATGGTACTGGACAGGTTCAG 11575 37 100.0 36 ..................................... GCATCATCGTTTCCGGACCCGAGAGATATGATATCC 11648 37 100.0 36 ..................................... TTCACCATATTTGATAAAAATACGTTAGTATGTTAA 11721 37 100.0 37 ..................................... ATGCCAGTGTTGCAGCTTCCGTGCGGGTTTGTGTTGA 11795 37 100.0 36 ..................................... AAACACAATTGAAGTTATTCCTATCGCTATATTCTA 11868 37 100.0 37 ..................................... CAGGAAAAGGTATCCGAAATACAGGTATTACAGGTAG 11942 37 100.0 33 ..................................... CATAACAAATTCGATATTCATCTCTCGATACTT 12012 37 100.0 34 ..................................... TGATAGGCATATAATTGATGTTTTGATAGAAAAG 12083 37 100.0 34 ..................................... TATAGAATTGTAATTGCAACAGACGATGAAACAC 12154 37 100.0 37 ..................................... TCCGTTATTGCCTCGTTTTTACCAATTATCCCTTTTA 12228 37 100.0 36 ..................................... AGATCGTACTGTAACTGCTTTACCAAATCGTCAAGG 12301 37 100.0 34 ..................................... AATTACCTATATTTCCACTCCAAAATCTGGTCTA 12372 37 97.3 35 .....T............................... AAGTGGATACATGCCCCACATGACCCCATTGAACC 12444 37 97.3 34 .....T............................... TTTCGACTTCCCATCTCCTGCTCCTGATGTCAAA 12515 37 97.3 36 .....T............................... CGGGACTCTGAGGTGATCAAGAATGACAAATGCACT 12588 37 97.3 36 .....T............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 12661 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [12666] 12733 37 81.1 0 .G...A...T.GCT......................G | A [12740] ========== ====== ====== ====== ===================================== ======================================= ================== 105 37 97.6 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCAGTGCTGTATGGGATACCGTAAAAGAGGATATTCCTTCTCTCAAAGAAGAAATCATTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCGGAATATTGCCCCTCTTTCTGATCCTGCCCAGGGGCGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 16262-6991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPH01000124.1 Methanosarcina mazei strain 3.F.A.2.7 scaffold9_1_size77455-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 16261 37 100.0 36 ..................................... AGAGTACATTTTCTAACGTTCTCACCTTTGAGAATC 16188 37 100.0 37 ..................................... ACACTATAAAATCAGCCGGAACGAAAGCTAAAGTATC 16114 37 100.0 35 ..................................... CAAAGTCCCCCGTAGGATGTACGAATCTTGGAAAG 16042 37 100.0 35 ..................................... CTTCTCGATCGTCATTAAAGGGATCTTCGCAAATG 15970 37 100.0 35 ..................................... AGAAAGTAAAATGCTTATCCAGCCGTACCTGAATA 15898 37 100.0 34 ..................................... CAGCCGGATACACTGTTACAGGCTCCGTTTCCGA 15827 37 100.0 34 ..................................... TTACGCCCTGGGAGATTTCGTATTTATCAACTAC 15756 37 100.0 35 ..................................... TATACTGCATCCGAAACAATGTTAATAAGAATTGA 15684 37 100.0 35 ..................................... TTCCAAGATCCAAAACTAGACCCGGCTGATACCGG 15612 37 100.0 36 ..................................... TTTTATACCCTGGAAATGGGCTGATCTACTACGGGC 15539 37 100.0 34 ..................................... CACTGTTGGAAGAACTTGTCAAACAAGGAATTCT 15468 37 100.0 37 ..................................... TTAACACCGTACCGCTCAGCCCTGAAGTTCAGGTCAG 15394 37 100.0 35 ..................................... GTGATTGCTGTAACTGAGGGGAACCACACTGTTGC 15322 37 100.0 38 ..................................... CAAACTCTTCAGAGCCATCAGGATAGATTCTAAGCACT 15247 37 100.0 37 ..................................... CATATATGCATTCCTAACCCATGCCATAACAAAAACT 15173 37 100.0 35 ..................................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 15101 37 100.0 38 ..................................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 15026 37 100.0 41 ..................................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 14948 37 100.0 39 ..................................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 14872 37 100.0 35 ..................................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 14800 37 100.0 36 ..................................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 14727 37 100.0 35 ..................................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 14655 37 100.0 36 ..................................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 14582 37 100.0 38 ..................................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 14507 37 100.0 35 ..................................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 14435 37 100.0 35 ..................................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 14363 37 100.0 34 ..................................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 14292 37 100.0 35 ..................................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 14220 37 100.0 37 ..................................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 14146 37 100.0 35 ..................................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 14074 37 100.0 37 ..................................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 14000 37 100.0 34 ..................................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 13929 37 100.0 35 ..................................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 13857 37 100.0 36 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 13784 37 100.0 36 ..................................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 13711 37 100.0 36 ..................................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 13638 37 100.0 36 ..................................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 13565 37 100.0 37 ..................................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 13491 37 100.0 35 ..................................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 13419 37 100.0 35 ..................................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 13347 37 100.0 33 ..................................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 13277 37 100.0 35 ..................................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 13205 37 100.0 34 ..................................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 13134 37 100.0 38 ..................................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 13059 37 100.0 36 ..................................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 12986 37 100.0 34 ..................................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 12915 37 100.0 37 ..................................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 12841 37 100.0 35 ..................................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 12769 37 100.0 37 ..................................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 12695 37 100.0 35 ..................................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 12623 37 100.0 36 ..................................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 12550 37 100.0 35 ..................................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 12478 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 12406 37 100.0 36 ..................................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 12333 37 100.0 35 ..................................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 12261 37 100.0 35 ..................................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 12189 37 100.0 35 ..................................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 12117 37 100.0 35 ..................................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 12045 37 100.0 35 ..................................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 11973 37 100.0 34 ..................................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 11902 37 100.0 34 ..................................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 11831 37 100.0 34 ..................................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 11760 37 100.0 37 ..................................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 11686 37 97.3 35 .....A............................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 11614 37 97.3 34 .....A............................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 11543 37 97.3 36 .....A............................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 11470 37 97.3 35 .....A............................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 11398 37 97.3 35 .....A............................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 11326 37 97.3 35 .....A............................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 11254 37 97.3 34 .....A............................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 11183 37 97.3 37 .....A............................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 11109 37 97.3 35 .....A............................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 11037 37 97.3 38 .....A............................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 10962 37 97.3 37 .....A............................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 10888 37 97.3 33 .....A............................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 10818 37 97.3 35 .....A............................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 10746 37 97.3 35 .....A............................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 10674 37 97.3 35 .....A............................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 10602 37 97.3 35 .....A............................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 10530 37 97.3 34 .....A............................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 10459 37 97.3 36 .....A............................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 10386 37 97.3 36 .....A............................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 10313 37 97.3 35 .....A............................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 10241 37 97.3 35 .....A............................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 10169 37 97.3 34 .....A............................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 10098 37 97.3 35 .....A............................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 10026 37 97.3 32 .....A............................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 9957 37 97.3 34 .....A............................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 9886 37 97.3 35 .....A............................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 9814 37 97.3 37 .....A............................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 9740 37 97.3 36 .....A............................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 9667 37 97.3 34 .....A............................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 9596 37 97.3 36 .....A............................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 9523 37 97.3 32 .....A............................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 9454 37 97.3 35 .....A............................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 9382 37 97.3 34 .....A............................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 9311 37 97.3 34 .....A............................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 9240 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 9169 37 100.0 35 ..................................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 9097 37 100.0 37 ..................................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 9023 37 100.0 33 ..................................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 8953 37 100.0 35 ..................................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 8881 37 97.3 34 .....A............................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 8810 37 97.3 36 .....A............................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 8737 37 97.3 35 .....A............................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 8665 37 97.3 35 .....A............................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 8593 37 97.3 34 .....A............................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 8522 37 97.3 36 .....A............................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 8449 37 97.3 35 .....A............................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 8377 37 97.3 36 .....A............................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 8304 37 97.3 34 .....A............................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 8233 37 97.3 36 .....A............................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 8160 37 97.3 34 .....A............................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 8089 37 97.3 37 .....A............................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 8015 37 97.3 35 .....A............................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 7943 37 97.3 34 .....A............................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 7872 37 97.3 43 .....A............................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 7792 37 97.3 32 .....A............................... TTATCAGCGTGGATATAATACTTATATTTCTT 7723 37 97.3 37 .....A............................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 7649 37 97.3 36 .....A............................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 7576 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 7501 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 7426 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 7355 37 91.9 0 .....A.............................GT - Deletion [7319] 7317 34 78.4 36 ---..A..AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 7247 37 81.1 35 TG...A..AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [7232] 7174 37 83.8 34 .G...A..AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [7159] 7102 37 81.1 36 GG...A..AGT..C....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC T [7087] 7028 37 78.4 0 TG...A..AGT..C......................G | T [7012] ========== ====== ====== ====== ===================================== =========================================== ================== 129 37 98.0 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCCGGGAAAAAACCGAATTCTTCGCGGCTACGTNNNNNNNNNNNNNNNNNNNNNAGTAGCTTCCACTAAAACAAGGATTGAAACTTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAAAGTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAGTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAA # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 16259-11920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPH01000095.1 Methanosarcina mazei strain 3.F.A.2.7 scaffold58_1_size25702-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================ ================== 16258 30 100.0 37 .............................. ATGATTGGCTTGGGGTTGGTGGCTTTGTCGAACTCGG 16191 30 100.0 35 .............................. TCAAACTGAGGGTGAGCTTCAGCACGCCTCATAAA 16126 30 100.0 38 .............................. CTTGCAAAAGAAATAAACAGAATGATTGGCGTAGAATG 16058 30 100.0 39 .............................. AAGATAATGATTACAGGTGTGTACGATACGCAAAAGAGA 15989 30 100.0 35 .............................. AGTTCAACGATCTCTCCACATGAAGGACATTTATG 15924 30 100.0 36 .............................. TCGTATGACTGCCTTGAATACCGTTCAACGTCATCC 15858 30 100.0 37 .............................. AATTTCAGTCGGATTTGTTTTAGTATTTTTTCACATG 15791 30 100.0 35 .............................. TTGTTATTTTTTTAAGGGGGTCTTTCAACTTCATT 15726 30 100.0 35 .............................. TTTTTGTTGCACAGAATGAACAATATCCCTGGATG 15661 30 100.0 38 .............................. ATCGCCGCCAGGGTTTGCCCAGGAAGTATTTTTCTCTC 15593 30 100.0 38 .............................. AAATCTTCAAATTCCTCCCTCAAGCGGACGTACCGAAA 15525 30 100.0 36 .............................. ATAGAGTGAGAGGGTTGCCTTTTCGATTTTCGCGCC 15459 30 100.0 36 .............................. TCATTGAGAAAGTGGTTAAATCTGCCGGAACATCCG 15393 30 100.0 38 .............................. AATTGCCGAAATAGTGGAGGTAATCATTTCTTTGTTAT 15325 30 100.0 32 .............................. ATTGGAAAAATTAAACAGGAAATAGCAGAACG 15263 30 100.0 36 .............................. CTTAATAAGCCCCCTGCCTGCGTCCCCTCGTCCTTA 15197 30 100.0 35 .............................. ATTGAATACAACAACTGGATAAGTGCGGCTTACTC 15132 30 100.0 36 .............................. GTTTATCGCCTTTGATGAACTTACTCAATTTTCGGA 15066 30 100.0 36 .............................. GTTTTCTGGTATTCGGGGGTTTTCGGGTCAGTCTGG 15000 30 100.0 38 .............................. GAGAATACCGGATAGAAGATAATTCAATAACCGAGAAA 14932 30 100.0 37 .............................. TCTATCACGTAATAAGTTCCCGACTGCGTTTCTGAAA 14865 30 100.0 35 .............................. CTGACCTGGTCAGGGGATAGAACAACAAAAGCCTC 14800 30 100.0 35 .............................. CTTTGATACTGCTGCGCCCCTGACAAGCGTGTAAT 14735 30 100.0 38 .............................. TTGGATTAATAGGAGAAGGCGCACCAATCCAAGTACAA 14667 30 100.0 36 .............................. TCCATAATACCAAAAAGTACATTATTTGACATTGAA 14601 30 100.0 39 .............................. ACAAAAGCATATAAAGCAGCTCATTTTGCTGCTTTTAAT 14532 30 100.0 46 .............................. ACATAATTGTAATGCTAGAATCTGTGACAAAGATTGTATACGGCTT 14456 30 100.0 40 .............................. TAAGTTTTTTATAATACTCAAGTGCGTAATCACAAATACA 14386 30 100.0 34 .............................. ATATACTAGACCCCTATATGCATACCAAACGCGG 14322 30 100.0 36 .............................. TTATATTGTGATTTACCAGATACCCAAGGGGACCGT 14256 30 100.0 36 .............................. CATTTAAAACTCATTGTTTTGGCTCCTTTGAACTTT 14190 30 100.0 36 .............................. TTTAATTGGTACGCTAAACAGGCGGACGTTGGAAAC 14124 30 100.0 36 .............................. GGTCCTCCGCGTTGAATCTTTGCGGGAATAGAGGTT 14058 30 100.0 36 .............................. AACAGCACCCCGTACCCTCTGCAATTATCGAATACG 13992 30 100.0 36 .............................. CTTGCAGGTACTAGAGCGGGGTTGATCGGGGTGAAG 13926 30 100.0 35 .............................. TAGTTATTCCACGCGCGGGCATCTGAGCCGCCGTC 13861 30 100.0 37 .............................. GTAGCTGATTCCTTCGAGATTACTGCCGATTTTGAAA 13794 30 100.0 38 .............................. TTTCTTCGGGTCATACTGCTTCATTGGTTCGGTCTGAC 13726 30 100.0 34 .............................. TGATCACATCATCTTCATTGAAAAATCCTTCATA 13662 30 100.0 36 .............................. GTTGTTCGCTTCGGGAGCAGTTGCAGCCGTCCAGCT 13596 30 100.0 37 .............................. TCAGGATATATAAGTATTATTTTTCCGTCCTCATTAC 13529 30 100.0 36 .............................. GTGATAGATTTCTATCTGTTTCGATTCTTGGATACT 13463 30 100.0 37 .............................. ACTATCCAGATCCCAGGACCCCAGGTTGAGACAATGT 13396 30 100.0 35 .............................. GTTCCGGCTGAAGCAATGCCCACCGAAAAAAGGAA 13331 30 100.0 35 .............................. TCTTCTTCTTCAGGGTCTTCGGCTGAAATGAGAGG 13266 30 100.0 36 .............................. TTGTCATGCTATAACCTCCTGAGCATAAGCTCCCTT 13200 30 100.0 39 .............................. GTCCGAGTGGATTGATCTGGGCCTCGTAGTTATCCAATC 13131 30 100.0 38 .............................. TGTGCTTTCTGTTGGAATTTCGGTGACATTTTCAGGGA 13063 30 100.0 35 .............................. TAGAACAAATGGCAGCCCCCGCAACACTTAACCCG 12998 30 100.0 36 .............................. CTAAGAAAAGAATACTCCGTCAGTGTTTTGAAAAGG 12932 30 100.0 36 .............................. ATCGGTGATTTCTTCTATAGCCTGAGAGTAGAGTTT 12866 30 100.0 38 .............................. TCCTTTGCGACAAAAGGTTTAGTCAGACTTATTTCAAA 12798 30 100.0 36 .............................. GAGAAAATGTTTCCTCGAGCCTCAACCGCGTATTTG 12732 30 100.0 35 .............................. CTAATATCTCAATTCGTGGTTGCCATATCCATGAC 12667 30 100.0 36 .............................. GGATCTTTCTCCGTGAGTGCCGGGTTGTCCTCCAGG 12601 30 100.0 34 .............................. TGACCTGAATTCTCCCTGAATTAACTTTAATATC 12537 30 100.0 36 .............................. CTTTAAATCCGGTAAAGGCCCGATGTGGCAGGCCGG 12471 30 100.0 37 .............................. TCCTTTGTACCTATGATAACGGATTAAACCGCCACAT 12404 30 100.0 37 .............................. AAATTCAGAAGCCAGGGTTACTGTTGGAGTCAAGAAA 12337 30 100.0 36 .............................. CTAAAAACTCCTCTTCTGACATCACCTCTCTTATTT 12271 30 100.0 35 .............................. ACTGATCCTTCCAATTTTGATGAGGTAAAATTAGT 12206 30 100.0 34 .............................. ATTGAACTATTACGGCATTTTGAAGGACAGGAGG 12142 30 100.0 36 .............................. AGGAATACACCGGATAAACTGCCTGCAATGAATACA 12076 30 100.0 96 .............................. GTGCTTAGGAAAACCCTTGTATATAAACATCTTTAAATTTGTGGGAGAAAAATTAATAAAAGGAAATTAAAAAGTTATATACTATTAGAAAAATGT 11950 30 80.0 0 AA..G.....CT.................A | T [11944] ========== ====== ====== ====== ============================== ================================================================================================ ================== 65 30 99.7 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : TATGAACTGGGTCCAAAATAGTGTTTTTGAAGGCGAACTCACAAGAGCCGAATTCGCAAAAGTTAAATCAAGGCTTAAAGAACTCATTGAAGAAAAATCTGATCACATCATTTTCTACAGCTCAAGAGATCGGAAATATCTTGGAATAGAAAATCTCGGAACCCCAAAAGCAGATACAAGCAATATCATTTAATTGCCTCGTCCATGAGTTTCATTACTTAGATCTTCATACTAGAATTAACACTTAATTTATATATTTCTCCCGTCTGCCTTTTTTGCAGTTCCTGTTTCTCCTCTTTTTTCGTGGATCTTTATATATGAACCTCCTGAAGCACGATCCCCGAAATCAGCTCTTAAAACCCTCTTAAAAAAAGAATGCTTTTATATCAACAGTGAACAAATACCATTGAATAAAAACAGTATCATTCCCCCGAATTATTTATCACCCATCTGACAGGATCAGGCATCCAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : TTTGGAGTTCGTAATTTCAATTTATTAATAAGACCTTTTAGGGATCATTTATTTTTTTTACATTTTATTTGGGAAATAATGACTTACCGTTTGGAGTTCGCAATTAGGAAAGATTTATCTATTTGAAATGCTTTATACTCTATAACTCATTAAGAAAAACGGGAAATGTAAATACAAAATTTAAATAATAGTCAGGGAACAAGTTATGGATCAAACAAATCCCGTTGAATTGACATTATTGTTTTTGAGAATACTGGAATTTCTGCAACAAAAAGCCTATATCCGAAAGACGGACAAAAAAACAATCCTTGGTAATGGAAAGAAAGTTATCTGGAGGTTAAATATTGATATATCAGTATACAGGGAACCCGTTCGTCGATAATGGTATGTGGGCAATTTGCGAATGGGCAGAAAAGAAAGACCCAAAGGAACTTGGAATTGAGGACATAAAGGAAAGTATTTCCGATATTATTCCAATTTATTTAACAGAATCTTGGGGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //