Array 1 25086-23730 **** Predicted by CRISPRDetect 2.4 *** >NZ_OABV01000023.1 Neisseria meningitidis strain Neisseria meningitidis isolate R785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25085 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25019 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 24953 36 100.0 30 .................................... GCCCCTGCTCGCGCACCGCCGCAACCTGCC 24887 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 24821 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 24755 36 100.0 30 .................................... TCATTAAATGATGTATCACAAGCACTTTTT 24689 36 100.0 30 .................................... TACATCGGCGGGATGTTTCAGTTCGTTTAT 24623 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 24557 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 24491 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24425 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24359 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24293 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24227 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCGTCATGACG 24161 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 24095 36 100.0 30 .................................... AGTAAGATGAGAAAATTATTGGGGGGTGGC 24029 36 100.0 30 .................................... TCCACTATATTTGCTTGCGGCAAGATGAAA 23963 36 100.0 30 .................................... TATTTTATGACGCGATGCACATCGTCGACA 23897 36 100.0 30 .................................... TTAACACGTCGTCGCCGACTTTGAGGTGTT 23831 36 100.0 30 .................................... CTGTACATAAGATGGGTTATCGGGAGTTTG 23765 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTAGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //