Array 1 3767-5450 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVC01000222.1 Clostridioides difficile strain LC1-18-0607 NODE_222_length_6178_cov_3.93522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 3767 29 100.0 35 ............................. TTATAATCCAACTAAATTCTTTTAAATAACTACCA 3831 29 100.0 36 ............................. AAAGAACTACCACTGGGATTATAATAATATACACTT 3896 29 100.0 37 ............................. TGTTTATTTGTTGCATCACTATCTTTTGTATCATCAA 3962 29 100.0 37 ............................. AGGTGCTATAGGAAGGTAGTTTTTATGGAATATCAAG 4028 29 100.0 37 ............................. AGCTTTACAATATCAAAGAAAAATTGAAACATCTATG 4094 29 100.0 37 ............................. AAGCATTTTGTTAGTTTATTTCAAACTTTAGAGGACT 4160 29 100.0 55 ............................. CCAACTAGGTGAAAGAAGTGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTTA 4244 29 100.0 36 ............................. CCAACTAGGTGAAAGAAGCTTACCCAAAAGTATCAC 4309 29 100.0 36 ............................. AGTTTATCAAGTAAACTTAACATTTGAGCGTTATAC 4374 29 100.0 34 ............................. GGTCATGTTCTTATCATATTAAAGATGTTCATAA 4437 29 100.0 37 ............................. TCATTCGTACTGTTAGTGGTAGCTGGTCTAGTAGCTG 4503 29 100.0 36 ............................. ACAGATAAGTGTAAGGAACTCCCAACAAACCCAATA 4568 29 100.0 37 ............................. TATTTTTTGAGCTCGTAACCAGCACATTTAACTTCAA 4634 29 100.0 37 ............................. TAATATATGACTTATAACTTTGATTTTTTGATTTTAC 4700 29 100.0 37 ............................. ATCGTAATGTCTTCAATCTCAAAATGTTGATTTTCCA 4766 29 100.0 37 ............................. GTACCCCTTTAACGAAATTAAAATTGAATCTAATAAT 4832 29 100.0 37 ............................. TCTCAACAACTTCTCTAGTTTTATTATAAATACGAAA 4898 29 100.0 36 ............................. TACCATACAACTATACAAATAAAACTCTGAAAAGGC 4963 29 100.0 37 ............................. CCCACAAGGTATTCAAAGAGAAATGAAGTTAGGAACT 5029 29 100.0 37 ............................. AGATTAAGTCAATCAGAAGTTAAAGAGTGTTTGAAAA 5095 29 100.0 37 ............................. AGAGCACGGCAAAATATCTTTCGAATACGAAACAATC 5161 29 100.0 37 ............................. CTATATTCTTTAATGCTAAAGTATTTATAATACTTGT 5227 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 5293 29 86.2 36 .........C............GA...G. AGAATATTAACAATATCAACGAGTATTTAGAAACTT 5358 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 5422 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================================= ================== 26 29 97.6 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAATTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : TAAAATAAACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAATAAAATTTATGATAAAGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 951-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVC01000228.1 Clostridioides difficile strain LC1-18-0607 NODE_228_length_6140_cov_5.05804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 950 29 100.0 37 ............................. CTGGGATTATAATAATATACACTTCTTCTAAAGTAAA 884 29 100.0 36 ............................. CATCATTAACTAATTTTCTATACTTCATTTTATCTA 819 29 100.0 37 ............................. AAGGAATAGTTTAGAAAGGAGAGTGAGAAAATGGCTT 753 29 100.0 38 ............................. TTTCTTCATTGCGCATAATTTCATATATAGCTTCTCGA 686 29 100.0 37 ............................. CTTATATGTCTTTATAGAATTTCTACTTTGTCTATTT 620 29 100.0 37 ............................. TAAATTTTGTGGTTATATTTTCTTCTTGTCCTGCCAT 554 29 100.0 36 ............................. AAAAGTGCAACAGCTCCTACAGCAATCATAAAAAAG 489 29 100.0 37 ............................. TCAAAATTATTTAGTTATACTAAACATTATATTATAT 423 29 100.0 36 ............................. TTCACACATGCTATGAGCTACTAACTTTTTTAAATC 358 29 100.0 36 ............................. ATAAAAAAAGAACCTCCTATACTGTTGGTTCTGCTC 293 29 100.0 37 ............................. GTAGATATAAATAGAATAAGAGCAGGTGACAAGGTAT 227 29 100.0 36 ............................. CTGCTCTAAGCTGTGCGGCTATTTTTAATCTTTCGT 162 29 100.0 36 ............................. ACGAAGCAGAGTATTTTAAAAAAAGTATTTTAAGAT 97 29 100.0 38 ............................. AAAATATATTTGTATCTATACCAAACAGGAACAACTAA 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGCATATATTTCATAAGTTAATATTTATTGTTTATATAAAATATTTGGTAAAGATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATCGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1367-3036 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVC01000249.1 Clostridioides difficile strain LC1-18-0607 NODE_249_length_5566_cov_3.83085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1367 29 100.0 36 ............................. AAAGAACTACCACTGGGATTATAATAATATACACTT 1432 29 100.0 36 ............................. ATACTATCACCTACTCTTGTTTTTGCTTCTCTAAAA 1497 29 100.0 36 ............................. GAAGATGAAAACGACAAATTAGAATGGGAACAAAAA 1562 29 100.0 38 ............................. TAGTGACTGGGCTGGTTTTAATGGAGGGGGAAGAGGTC 1629 29 100.0 37 ............................. AGGTTCTTTAAATAAGGAAAAAAGATAAATATATTTA 1695 29 100.0 37 ............................. GACTTCCTATAACGTTTATACTCACATTATAAGACGT 1761 29 100.0 37 ............................. TAGACAAGCAAATTGAAGAAGAACAAAAAGCAGAAGA 1827 29 100.0 37 ............................. TTAAAAAATCGAGAATTTGAATTAGATGATGTAACTA 1893 29 100.0 36 ............................. TTAGTTGCTGCTGTGATAGGTACAGTAACAGCAGCA 1958 29 100.0 37 ............................. CATTGTTCAAATTCAAACTTTCTATGAAGTTATTAAG 2024 29 100.0 37 ............................. ATTGGAAATGAAAAAAAGTCATTTAAAAATAAATTAA 2090 29 100.0 36 ............................. TGAGGGGTGCGTAAGTGATATATTTAAGCAATATTC 2155 29 100.0 37 ............................. GTTTCTAATGCTTTTTGAATTAGATTAGAACCCCATT 2221 29 100.0 36 ............................. GTTTTGTCTGGTGATAAAGAGGCAATGTCACTAGAG 2286 29 100.0 36 ............................. AGGAATTACAGGGTAATAAGATAAATATAACGGAGA 2351 29 100.0 37 ............................. CGTACGGATGTACGACGTAATTAAAATTTAATATAAA 2417 29 100.0 37 ............................. ACCCCTAACTCTACTGTGTAATGACACACAAACTATC 2483 29 100.0 37 ............................. TGTAGTTAATATAAAAATTCTTATTACAATATCATTT 2549 29 100.0 35 ............................. TAACCTTGTATTTGTCTAATACGATACAAAGCAAA 2613 29 100.0 37 ............................. TGTCTTTAGAAACAAAACTAATACTATTATTACTAGA 2679 29 100.0 36 ............................. TTATAGCATCTGTATTTTGAGCAATCTCCATGAATG 2744 29 100.0 38 ............................. TTTCGACCCGGTATATTTATTTTTTCAATCAAACGTTG 2811 29 100.0 37 ............................. TACTTTTTGAGTTCATAATTTGCACACTTAACCTCTA 2877 29 96.6 37 ..........G.................. TCAGGGTATGACTATTTATCTACTAGAGAAATTGACA 2943 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 3008 29 86.2 0 ................T....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGCAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2528-3216 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVC01000392.1 Clostridioides difficile strain LC1-18-0607 NODE_392_length_3465_cov_3.84931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2528 29 100.0 36 ............................. ATTCCTAGCACAAGCAATATGATTGGAATGTATTTA 2593 29 100.0 36 ............................. ATATATTCATGCTCCACAAACTGGTGACGTAGTAAA 2658 29 100.0 37 ............................. AATGATAAAGCTGGTCGTATTTCATTTTGGAATGATG 2724 29 100.0 36 ............................. TACGAATGTTCTATAAATATAGAATTATTTGTCTGT 2789 29 100.0 38 ............................. CAAGTAATTTAAGATGGGATAATATAGACTTTGATAAT 2856 29 100.0 37 ............................. GTTACCTGCATCATCTTGTACCTGTCTTGCTCGAGCA 2922 29 100.0 36 ............................. TGAAATGTGAATTATTTTCAAATGTATGTTTTACTT 2987 29 100.0 40 ............................. ATCATATTAAAATGATAATTTTAAATACTTATTTATTCTT 3056 29 100.0 36 ............................. CAAAACAATTAGTAGCACTACTTAAAACAACAGCAC 3121 29 100.0 38 ............................. CCGTCTTTTGTTGCTTTACATAAATTTATATTACTTAT 3188 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCGCTATTGCTCGTTTACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2355-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVC01000470.1 Clostridioides difficile strain LC1-18-0607 NODE_470_length_2612_cov_3.87606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2354 29 100.0 36 ............................. ACTCCTGTGCCTGCACTATTAGAATTATAAGTACTT 2289 29 100.0 36 ............................. CTCTACCATAAATAGATTGTAGTTCTTCTTGCTTTT 2224 29 100.0 37 ............................. TCAATAGGACCATATCTAATAGAATATTTGCTTTTCA 2158 29 100.0 37 ............................. AAGTGCAAGAGCTAGTTATGCAGATACAGCAGCACAG 2092 29 100.0 36 ............................. TTGGACTTAAACCGCTTAAAGAACTAGCAGGTATAA 2027 29 100.0 37 ............................. TTGTGTAACTTAATATCAATAATAGCGATAGTATTGA 1961 29 100.0 38 ............................. TGATTTTTCTATAGAATTTGAAAAGAAAATGGATAAAC 1894 29 100.0 37 ............................. ATGTACAAAAACAAAGCTCCCTGGCTAAATGAAGTGA 1828 29 100.0 38 ............................. TTTGACAAGGGTGGTATGTAGATGTTAACACCTGATGA 1761 29 100.0 36 ............................. TTATGACCTAATCGCTAAGAATGTACTTTTTTTAGC 1696 29 100.0 38 ............................. TAAAACAATTGAATAAATATAATAAGATGCAACACAAA 1629 29 100.0 37 ............................. TATCTTTCTTGGCTTTTACCAATCAAGTCTATGTCTG 1563 29 100.0 37 ............................. TTAATGTTTGGAAGACATTACTCGGGATTAATACCAA 1497 29 100.0 36 ............................. TTTGCATGGTACTAGACACACATATATGCAGTTGGC 1432 29 100.0 38 ............................. TTAGCTAAAGATATTGCTAATGGTGTATAAAAATTAAA 1365 29 100.0 36 ............................. TAAAACTACGATACCTAATAATACTTCAATTAAAGC 1300 29 100.0 37 ............................. ATTTTTTATTTAAACTTAGTAACTAAAAATCTATTTA 1234 29 100.0 37 ............................. GACAAAAAATGAAAGTTACTATGAGGAATATAATATA 1168 29 100.0 37 ............................. TCTTGCTTACCATGTTTGAAATTTTCAATAATGACCT 1102 29 100.0 38 ............................. TCAAAAGTACCATCTATTTGTATTTCTATATTTTCATC 1035 29 100.0 38 ............................. TTAAAAATACTAAATGCAACTGCTCCTAAAACATATAA 968 29 100.0 37 ............................. TGGTATTTGCTAATATTGATTAATAGTACTCGAAATT 902 29 100.0 37 ............................. TAATAAGCTGTAAAATTTGTGTCGTTATCATCATAGC 836 29 100.0 37 ............................. GTTTTAACATATTCCATAAATGCCTGTCTATACTCCA 770 29 100.0 39 ............................. TCGCTTCCCGCGCTTTCTGATTCTAAATTTTTATTGCTA 702 29 100.0 38 ............................. CGGATTTTAACTGGTTTTATGCAACAATATAACGCTAA 635 29 100.0 36 ............................. CTCCTTAACCTACCGCATAAAAACGAAAACTAGAAC 570 29 100.0 36 ............................. TATCGAACTGATAGAGCTGTTAAGCCTGGTACTTGG 505 29 100.0 35 ............................. TCACTTGGTACTGTACATGGATACGCTGTATTCGA 441 29 100.0 37 ............................. CAAGCATTTTCTAATATACTTGTATCAATACATTCCA 375 29 100.0 37 ............................. GTTTTTGTATTTATCTCCCCTTTTTTCTTATCCTCTG 309 29 100.0 36 ............................. TTAGAAATTTTACTTGAAAATATTATACTAAAGGAT 244 29 100.0 37 ............................. ACTCGACTGAACATAGAAACAGCTTTTACAACTCCAA 178 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 112 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 46 29 96.6 0 ...............T............. | ========== ====== ====== ====== ============================= ======================================= ================== 36 29 99.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : GTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGG # Right flank : TTTGCAACAAGTATAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 233-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVC01000484.1 Clostridioides difficile strain LC1-18-0607 NODE_484_length_2510_cov_3.66555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 233 29 100.0 37 ............................. GAAGCAAAGTTATTTACAAAATGGGTTACAAAAACAC 299 29 100.0 36 ............................. CATACCAAGTCCAATATCTGCAATATTAGATTTTAA 364 29 100.0 36 ............................. TTCCAATTTATTGTATCTCGTGAGTTAGGTAACAAA 429 29 100.0 36 ............................. GATAGCAAAGCTTGCAAAGTAGATATTTGTGTTTTT 494 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 99.3 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : AAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATAAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGGG # Right flank : ATTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGATAATGTATATAAAAAATAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7459-8942 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVC01000074.1 Clostridioides difficile strain LC1-18-0607 NODE_74_length_11356_cov_5.18906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 7459 29 100.0 37 ............................. AGGTGTGGCTCTGTTTCATTGTCTGCTCATAAGAAAG 7525 29 100.0 36 ............................. TATATTAACTGGAACATTTCGTTCTATAAACATTAA 7590 29 100.0 37 ............................. GAAACAAAGAAGGTCGTAATATTGATTTTGCAATAGT 7656 29 100.0 37 ............................. TTGGTTGATGCAATGTCTAATTTTAAAGACAAGTTTC 7722 29 100.0 38 ............................. GAATATCTTCCTTATACTTATAGGAGTTGGAATTATAA 7789 29 100.0 36 ............................. GTATTTTTAACAGAAGATGAGGACTCTGTACATGAA 7854 29 100.0 38 ............................. ATAAATGCAATGAGACAAAATAAAAAGTTGGAAAAAAC 7921 29 100.0 36 ............................. TTCTTCTTTTTAGAATTATAAATATCCATGTTAATA 7986 29 100.0 37 ............................. TGATTTATCAGTTTACTTTAGAAATCGCTCAGATAGT 8052 29 100.0 38 ............................. AAGACTGGAGTTAAATATACAAAAATGTTTATTGGCGT 8119 29 100.0 37 ............................. TTTGACAAGGGTGGTATGTAGATGTTAACATCTAATG 8185 29 100.0 38 ............................. CTCAAACTATACCATTTCCCTTGCCATTTCTTATGATT 8252 29 100.0 37 ............................. ATAACTCATTCCATGTAACTCTTCCTTTAGACGCTTT 8318 29 100.0 37 ............................. GAGCTTTTAAAATGCACTGAATACTCATTTATTACAT 8384 29 100.0 37 ............................. TTGCCTCTAATTCTTTGTCATTTAACTTGCTAAATTT 8450 29 100.0 39 ............................. TTTGTTGACGCTGAACTAATCGAACATGTTGCTTTGAAA 8518 29 100.0 37 ............................. ATTATTTCAGTCATTGCAATTTCATTGAACAATTCTA 8584 29 100.0 37 ............................. GTCTTTTATATCTGTTAGGTTCATCAAAGGCAATTCC 8650 29 100.0 38 ............................. GAACATAAAGATGAAGTAAATTCAGCTAAGTTAGCAGT 8717 29 100.0 37 ............................. CATATTTCGTCGCATATATCTGTATGAGGATGTGCCA 8783 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 8848 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 8914 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 23 29 98.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGGTAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTTTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //