Array 1 154899-150960 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODW01000007.1 Acinetobacter baumannii MSP4-16 Contig007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 154898 29 96.6 31 ............................G TAACGCTGGTACTCTGTACGTTCTACGTTAA 154838 29 100.0 31 ............................. TCAAGAGAAGTTTTATAGTGTTCGTGTATCT 154778 29 100.0 31 ............................. TTCACTGGATTACGTTCTAAGCCTTCCTGAA 154718 29 100.0 31 ............................. ATAAGCCTTATGAGGTAGATACTTCAAAAAT 154658 29 100.0 31 ............................. ACTCGGTCACAAGGCGTAGTCTACGGTTTTT 154598 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 154538 29 96.6 31 ............................T CAATTGGAACGATATCAGGCTAATAACTACG 154478 29 96.6 31 ............................G GTACAAGCCATCACATGTATCTGCTAGTTCA 154418 29 100.0 23 ............................. ACACATGCCAGATGGTTCAAATG Deletion [154367] 154366 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 154306 29 100.0 31 ............................. GTAGGAAGCTCTACATCTAGTTTTAAATAGG 154246 29 96.6 31 ............................T ATGAGTGAGGGAGTAGCAAATGTCTGAACAA 154186 29 100.0 31 ............................. AGAAAGCTGAGCAATTGCCTGCTTTGCCTAT 154126 29 100.0 31 ............................. ATCCCATTAAAGAAATCATTTTGGTCTTGGA 154066 29 100.0 31 ............................. AGATCAGAGGCACCAAGCAATGCAGACTCCC 154006 29 96.6 31 ............................T TTACCCTTGCCATGCTTGCCAGAATTAGAAT 153946 29 96.6 31 ............................T ACCACCCATTGAACGTTAGCCATATGAGCAA 153886 29 96.6 31 ............................T TCCATGCTTCACATAGAAATTCATTGCAAGT 153826 29 96.6 31 ............................T ACTGCTTCCCAAGTCAGTAAAATGATTGTTA 153766 29 100.0 31 ............................. CAGTAGTATCATTTCAATCGAGTAACGTTGA 153706 29 100.0 31 ............................. AAAAGACCCAAAGAAATTCGCTCGTTTCTTT 153646 29 96.6 31 ............................T ACACGGCGATCTTGTTTAATAGTCTGAGTTT 153586 29 96.6 31 ............................C AATACAAACATTTGACTGCACATCTGGAACA 153526 29 96.6 31 ............................T AGAAAGCTTGGAAAACAAAGGTGACTGTAAT 153466 29 100.0 31 ............................. GAAACATCTGTTATTTTTATTGATGAGGTAC 153406 29 100.0 31 ............................. CCCTTTGGATTGAAGACTCTGCTTTTGCTGC 153346 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 153286 29 100.0 31 ............................. AGCAAAATTCAAAAGAATTACCCCAGCCAAG 153226 29 96.6 31 ............................T TGGTGTGCCTGCGCCCACTCAAGCCATGATT 153166 29 96.6 31 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGGC 153106 29 96.6 31 ............................T ACAATACGACGTGATAATGCAACTAAAGCCC 153046 29 100.0 31 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGTG 152986 29 100.0 31 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCTA 152926 29 93.1 31 .............C..............T TTTGTTTATACGGTTAATAAATCAGTACAAT 152866 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 152806 29 96.6 31 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGTA 152746 29 96.6 31 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCAG 152686 29 96.6 31 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACAG 152626 29 96.6 31 ............................T AGATAATGTTGAATGGGTTGAAACTACCTAC 152566 29 100.0 31 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTCCA 152506 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 152446 29 100.0 31 ............................. AAACACCAAGCCATAAAATTAATTACAGCAA 152386 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 152326 29 93.1 31 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTACA 152266 29 82.8 31 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 152206 29 89.7 31 ....C.......G...............T TAAATGCTCAACTATTTCTGTAGCTAATGGA 152146 28 82.8 31 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTTT 152087 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 152027 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 151967 29 82.8 31 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAGC 151907 29 96.6 31 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAAT 151847 29 100.0 31 ............................. AGAGACACATCGTTAATAATCTCTTGTGCGG 151787 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 151727 29 89.7 31 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACTG 151667 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 151607 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 151547 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 151487 29 89.7 31 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGCG 151427 29 93.1 50 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 151348 29 89.7 30 ....G........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [151322] 151288 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 151228 29 89.7 31 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTGG 151168 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 151108 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 151048 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 150988 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================== ================== 66 29 94.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [50-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //