Array 1 113763-114522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPW01000001.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 122 NODE_1_length_374107_cov_22.3446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113763 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 113824 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 113885 29 100.0 32 ............................. TCTTCAGAAATGATGAGTTTTTCCAGTCCGTC 113946 29 100.0 32 ............................. TGTCGGACAGTATCTGGTTGGCTATGGGGGGC 114007 29 100.0 32 ............................. GAATTAAACGTTACTGGCATGATACCGTTCGG 114068 29 100.0 32 ............................. GTTTCGCAGGTACGGTTAGTCCGGCCAATTCA 114129 29 100.0 32 ............................. GCGACGGCGTTTATCAGTGCGAACAGGACCAG 114190 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAGGATGAGC 114251 29 100.0 32 ............................. AATCAGAAACAAACAAGACTTACTGGATGTTG 114312 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 114373 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 114434 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 114495 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 130667-132080 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPW01000001.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 122 NODE_1_length_374107_cov_22.3446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 130667 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 130728 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 130789 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 130850 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 130911 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 130972 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 131033 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 131094 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 131155 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 131216 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 131277 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 131338 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 131399 29 100.0 32 ............................. CCATCTTTTTCGCGCCTTGTTGGTCAGGCAAT 131460 29 96.6 32 ....A........................ CACATCTCCAAACTGGAACGCGCCAACGCTGC 131521 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 131582 29 100.0 73 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG 131684 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 131745 29 100.0 32 ............................. GCTATTGTGATGCAGTCAATGCAATGGGGTAT 131806 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 131867 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 131928 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 131989 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 132051 29 86.2 0 TAA.........T................ | A [132075] ========== ====== ====== ====== ============================= ========================================================================= ================== 23 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //