Array 1 87961-89273 **** Predicted by CRISPRDetect 2.4 *** >NZ_VASW01000006.1 Escherichia coli strain CRE747 747E2014_contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87961 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 88022 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 88083 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 88144 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 88205 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 88266 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 88327 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 88388 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 88449 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 88510 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 88571 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 88633 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 88694 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 88756 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 88817 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 88878 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 88939 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 89000 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 89061 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 89122 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 89183 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 89245 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTCAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114820-115702 **** Predicted by CRISPRDetect 2.4 *** >NZ_VASW01000006.1 Escherichia coli strain CRE747 747E2014_contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114820 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 114881 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 114942 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 115003 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 115064 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 115125 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 115186 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 115247 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 115308 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 115369 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 115430 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 115491 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 115552 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 115614 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 115675 28 72.4 0 ..A........C..T..-..T.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //