Array 1 26056-28076 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRT01000002.1 Actinomyces naeslundii strain G127B G127B_contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 26056 36 100.0 28 .................................... CCAGGAGGATGCCCGAAGCGGGTGACGG 26120 36 100.0 28 .................................... TGTCCGGTGACCGACTGAAGAAAGTCAT 26184 36 100.0 28 .................................... ATGACGCAGAAGTAGATGAACGTGTCGG 26248 36 100.0 28 .................................... GCTGACCCGCCCAGTGTGCAGGCCACCC 26312 36 100.0 28 .................................... TTGTTGTGGATGCGGATCAGGACTCGGC 26376 36 100.0 28 .................................... GTCGACCTCACTGGACGCGGTCAGGCCC 26440 36 100.0 28 .................................... TGACTGGCGACGTTCCAGAAGCCCTCAG 26504 36 100.0 28 .................................... CCCAGTACCACCTGTGGTACGCTGACCC 26568 36 100.0 28 .................................... ACGCCGCATCCCACGCCTTCGCTGGCGT 26632 36 100.0 28 .................................... CGTCGGCGAAGTAGCCGTGACCGGAGTA 26696 36 100.0 28 .................................... CACGCCGGGCACGCCGTGTCCCCGTCCA 26760 36 100.0 28 .................................... AGCCTCGGTCCTGGGGCGTCCCGGCGGA 26824 36 100.0 28 .................................... CGCTGCTTGTGCCGCGGGTTCTCGCAGA 26888 36 100.0 28 .................................... GCTGTGTGGTGGGGTGGCACATGGGGGT 26952 36 100.0 28 .................................... GCTGCACATAGGACTGGAACCAACCCAC 27016 36 100.0 28 .................................... ACTTGTTCGCCACGGTCGAGGACCTGGA 27080 36 100.0 28 .................................... GGCCCGCGTAGCTCTTGGCGCGGTCGAG 27144 36 100.0 28 .................................... GCCTCATCAAGCAGTGGCAGGCCAAGCG 27208 36 100.0 28 .................................... CGTCGGCGGACATGATGCGCGCGGTCGG 27272 36 100.0 28 .................................... TCACGCGGCCTCCAGGGCTGGTGGGGTG 27336 36 100.0 28 .................................... GCCGACTCCATCGCCAACACCTTCCCCA 27400 36 100.0 28 .................................... GCTGGGCCTTGCGCTGGTCGGCGGCGAG 27464 36 100.0 28 .................................... CTGGCCGCGAGATCCTGTCGAAGGCCGT 27528 36 100.0 29 .................................... CTAGTCCTGATGGGGCGGATATTCGTGGT 27593 36 100.0 28 .................................... CGGTGCGTGAGGTGGTCACGTGTCCTCC 27657 36 100.0 28 .................................... ATGGAGGTCTACTCGCGCCGTAACAACA 27721 36 100.0 28 .................................... ATCGGCCCGCGCACCCTGTGGGGCGCCC 27785 36 100.0 28 .................................... AGCGCATCCTTCCCATTGGTGTTGGAGT 27849 36 100.0 28 .................................... GAGAAGACGGACAAGTTCTATCGCCCTG 27913 36 100.0 28 .................................... TGTCCTTGAAGCGCTTCTTCAGTCTCTT 27977 36 100.0 28 .................................... ACAGGCCCTCCTCGTCGACACGGGAGAC 28041 36 72.2 0 ................C.C..AAG.CA..C.G..A. | ========== ====== ====== ====== ==================================== ============================= ================== 32 36 99.1 28 GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Left flank : CGTTCCGTGAGGACGGTGCCACGCTCCCGACCGTCTTGGAGGAGCTGGCGCAGCACTTGGGCCAGTACTGCGAAGGGGACCGCGCTCGTTTGAATGTCCCATCCTGGACCGGCCCGAGGCGCGAATCCTGATGGCGGACGATCCGGTGTGGTGTGTAGTCATGTTCGATCTGCCGGTGGCGACGAAAAAGCAGCGCAAGGAGGCGACTTGTTTCCGCCATCTTCTCCTGGATGAGGGCTTCTGGATGGCGCAGTACAGCGTCTACGTCCGTTACTCCCCGACCGTGGCCGGAGAGCCTCGTAGGGCGAGCATGATCAGGAGCAACCTGCCGTGCGGTGGCGAGGTGAGGATCCTGTACGTCACCGACCGTGAGTGGTCGCACGCGCTCTGTTTCCGCAACGAAGAGCCCGTCGAGGCCGAGCCAGAGCCCCAGCAGCTCATGATCTTCTGACCTCTGACGAAGCGTTTACGCTGGTCAGACCCCCTAGACAGACATTTCT # Right flank : CTAGATTTCCACCCGAATCTCCCTCGCCTGAAAAGCGCTTCACGACGATTGTCGTGGCGGTTATCGAAGGGGTGGCGGACAACCTCGGTTCGGTGTCCACGCAGCGGACATCAGCGAGGCGGCCGTCGAGGTGCCCGGCACGAATCGTTGGAATTCCACGCTTCTAACTCGGCCTACGGCGTCGGCATGGTGTTGATGTCCGCTGCGTGGACACAGGGACGCCTGGCGTCGGGTGAGGACGCACGTCTGCTGCGAAGAGCTGTGAACGAGAACGTGGCGGTGCGCAGGCAGAAGGAGCTACTGCCCGCACACCGCCACGGAAACGCGGGTGAGGGTGACGGCATACCGTCCACTAGTCCCCTTCTCACCCTCACCCGCGGGTCCTGTAGGCGCCTCGCGCCTCATTGGGCCAAGCCCGAATCACCGCCCTCTCCATCGTCATCGGCGGCTTCAACGCCTGCGACCGCAGCGCCCGGGCTCCCGACAGCGTCGCCGGCCTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 18939-18408 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRT01000022.1 Actinomyces naeslundii strain G127B G127B_contig023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 18938 36 100.0 35 .................................... ATGTTCAGTACGAAAGCTTTCCAGATTTTGCAGGT 18867 36 100.0 35 .................................... ACCTGCATCCCGGCGCTTGAGATCTTGATGCCCCG 18796 36 100.0 35 .................................... TGGTGGATGAGTGGCTGCCCCCAGTAGGAGACCGA 18725 36 100.0 35 .................................... ATGTGGGAGGCCCTCTACCAGCAGCACCCGACGCC 18654 36 100.0 35 .................................... ACGGGGAATTTCCGTGAGGCGATGGAGAAGGGCGA 18583 36 100.0 34 .................................... TGGGCGGCTCATCAGATGGGATCCCAGATCCCGC 18513 36 88.9 34 .........T......A.G.....T........... CCTGCTGGCGGTAAGCCGATCGTCAAGGTACGTC 18443 36 86.1 0 ....T.T.........CG.................T | ========== ====== ====== ====== ==================================== =================================== ================== 8 36 96.9 35 GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : GCTTACAAGGGAGTGACGGTGCGCTGATGCGTGACGATGTCAGACGCGTTCTCGTGGCCTACGATGTCCCTTCTGATCGGCGCCGGACGCGGGTGGCGAAGACGCTGTTGAAGTACGGGGACCGCATCCAGTACTCCGTGTTCGTCGTAGATACAGCGCCGGCCAAGCTCCTGCGGATGCGGGGTGAGCTGGAAGGAGTCATTAAGACGGATGAGGACTCCGTACTCCTGTGCGACGTCGGCTTGCTGTCCTCCGTCGATGAGCAACGATTCTCCTACGTCGGTTTGACTAGGACCATTACGCCGGAGGGACCGCTTATCGCCTGACGCGAGCGCTCCGGTGCGAAGAACCCTGGGCAGCGCTCGCGGCAACAAAACGTTGGAATGATGGGAGTGAGGTGAACTGAGCAGAGGGCGGGTGGGGCTGAGCCTGAGCGATCGGCAGGAGCGCTCGCGAAGTGTCGTCAGATGGGCCTGTTGGCGGGCTATACTGAGCGGACC # Right flank : AGGTGGGGATTGATGCGCCTATCGTGGTTGTCGATCCCCACCTACCGCATTTTGTGCGTCACCTTCCAGGCCCGCCTGGCACCCTCCAGGGCGGCGGGCAGGACGGTGAGCAGGCGCTCGACGTTGTCGAGGCTCGTCTCCCGGCCCAGGGAGCAGCGCAGTGTGGAGCGGGCCGGCCCCTCCTGAAAGCCCATCGCCAGGAGCACATGGCTCGGCTGGGCGACCCCGGCGTGGCAGGCCGACCCCGCGGACGCATCGATCCCGGCCAGGTCCAGGGCCATGAGCAGTGCCTCGGCATCGGCCTCCTCGAACCACAGGTGCGCCGTAGAGGCCACATGATCGGCATCCTCGGGCAGCGTGGCGTGAACACCCGGAAGCGTCCCGGCCCCCTCCAGAATCCGGCGCCGCAGGACCGCCAGCCGGGCCTCCTGCTCCTCCCGCTCGGCGACCGCCAGCTCTACCGCCAGGGCCAGCGCCCGGGCGGCCACCACGTCCTTCGT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 12512-11811 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRT01000024.1 Actinomyces naeslundii strain G127B G127B_contig025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12511 29 100.0 32 ............................. CTGAACGCCGTCGCCGGCGGAAATGCTGAGAC 12450 29 96.6 32 ............................G GACGCGATCTACTCCCAGGGCGCCTACATGTG 12389 29 100.0 32 ............................. CCGTACTGGCTGACCCCGATCTGCCCACTCAT 12328 29 96.6 32 ............................G TCCACCTCGAACGCCGCGCTACGTCGGCCGCC 12267 29 100.0 32 ............................. CCGTCAGAGAGGTCGGCGAGCCACTCCGGCGG 12206 29 96.6 32 ............................G ACACACCATCGATCACACTCCAGGGGGTGGGT 12145 29 100.0 32 ............................. CCCGCACCACCAGACCCAACGACGCCGGCGGC 12084 29 96.6 32 ............................G GTGGATGACCGTCTTTCCTGTGACGGCCGCGG 12023 29 100.0 32 ............................. CGGGTTCGGGTCGCGGGCCAGGAGCGGTGGGA 11962 29 96.6 32 ...........................T. TCGCCGAAGCTCCAGTCGGGCGCGAAGGTGCT 11901 29 96.6 32 ...G......................... TGCGCAGCAATGGTGGTGGGAGACCATGGCGC 11840 29 79.3 0 ..G...................ACGG..T | C [11814] ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.6 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CGAGCGGGGATGATCCCGCCCTCGTGGCCGGTCATGACTGGCCGGTCA # Right flank : GTGTGCTTGAGGTGGCGTGACCGGGTCATGAGTCTGGGGTGCCTGGACCGGTGCCCATCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGATGCCTCCGTCATCGCCGCCCCCGGTGCCAAGGAGCCCACCGCCGCCGTCGAGAAGGTCACCGAGAAGGCTGCAGAGACGGGCGAGGCCTGATCCAACACGCCCAGTCGATTACTTTACAAATACATCCGGTGTGATGCAGGATAAAGTCGTTGCTCGGCCACCAGGGCCTGGTCGGGCAATGGCGCTCCTGCTCCCCGGGACCGCCTCTCTCATCTCCCTAGCCGGTGCTTGTCAGGCCGCCGAGACGGTGGCCTGAGAGGCGTTATGCGTGACCTCAACCCTGGGTGGGGCTGCCGGCACCCTAATTAAGAGGTTTTGACAATGAGTGTCAGAGGCACTGCGGAGATCGTCTTCTCCCCACCGGTTCAAAACTGGTTGAAGCAGGTGATCTACCGCCATAACTGCC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2277-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRT01000004.1 Actinomyces naeslundii strain G127B G127B_contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2276 29 100.0 32 ............................. CAACCTACCAACTTTGTTGCCCCTGTCCCGAT 2215 29 100.0 32 ............................. CCCGCGATTCGCTCGTCGCCGAACTCGACCAC 2154 29 96.6 32 ............................A GGACTCAACACGCCCCGCTGTGTTGCCTCTAT 2093 29 100.0 32 ............................. GCAGGCGACACCATCCTCCGCGATGGCGGGGA 2032 29 96.6 32 ............................C GCGCCCTACGCCAAGAACATCGACGTGGTCCG 1971 29 100.0 32 ............................. CCCGCCGCCAGCAAGTCGGCCAAGGCCGACGA 1910 29 96.6 32 ............................C GCCGCCGGGCGGAGGCGGGACCCTGAACGCCG 1849 29 100.0 32 ............................. GCTCCATGCCGATCGGCTCGCAACACAAGGTC 1788 29 96.6 32 ............................C TGGTCCTGGGCGAACTCACCGGACTTGGTCGG 1727 29 96.6 32 ............................C CCCGGTGCCAGGGATTTCGCGTTCCCAGCGTC 1666 29 100.0 32 ............................. GCGACGGCGCGAGGCGCAGGCACTCCCCACTC 1605 29 96.6 32 ............................C GCGCCAGAGCCTCCACGACAGCCCATGCCCGC 1544 29 100.0 33 ............................. AGTGGTTCGGTGTCGAGCCAGGAGCGGACTTCG 1482 29 96.6 32 ............................C TCTAACTCTAACTCTGCTTTCGGTTTGGGTTT 1421 29 96.6 32 ............................C GCCTTCCTCGCCGTCAAAGCCGTCGCCGACCT 1360 29 100.0 32 ............................. AGCGCCCCCAAGACCCGGATACGGCCGCACGT 1299 29 100.0 32 ............................. CTCCTTGTAGTGACCGTCCCGGTCCAGGCGCC 1238 29 100.0 32 ............................. GGGTGGCTGCTCGCTGGTGGCAGTGGATGTTG 1177 29 100.0 32 ............................. ACAGAGCGGAGAGCGCGAGCGACTCCTCCACG 1116 29 100.0 32 ............................. CCGACGTCGGACATGACGACCGTCGTCGCCGA 1055 29 96.6 32 ............................C GCACGAAGGCGGACTACCAGACCAGACGAGAG 994 29 96.6 32 ............................T GGCTGCGACGGCATGCTGACGCTCTGCCAGGA 933 29 100.0 33 ............................. GGCCCCCACCAGCAATCTGGTGGGGGCCCTTCA 871 29 100.0 32 ............................. CGCTTCTACGGCCTCGGCCCGTGGGGCATCGG 810 29 96.6 32 ............................C CCGAGGCGGGTACACGCCTCACGGCCCATCTG 749 29 96.6 32 ............................T GGGGCCAGATCACCACGGACTGGGGATCGGCC 688 29 100.0 32 ............................. ACGGGCTCAGGGTCGGTGGCCTCAGCGGCCTC 627 29 96.6 32 ............................C AACGCCGCCATCGTCAAGGAGAACACGCAGGA 566 29 100.0 32 ............................. GTCACCTCGTTCATCGCAGCCAACGTCGCCTC 505 29 96.6 32 ............................C CGACACGCTCGGTGATCGCGACGCCGTCGGGC 444 29 96.6 32 ............................C GCGGCCGCCGGATCCTCGACACCGAGGTTTGC 383 29 100.0 32 ............................. CCCACCGCCCTCGACCAGGCCGTCACCCAGGT 322 29 100.0 32 ............................. GAAGGCGATGTGGTTGATGAGTGCGTAGACAT 261 29 96.6 32 ............................T TCGGCGGGGGTCCAAAGGCCGCCATCGTCGCA 200 29 96.6 32 ............................C TGCTCTGCCAGTTGCAGGAGCTCTGCGATGAG 139 29 100.0 32 ............................. GCGGATCACGTCTACATCCATGTCTTCGATGA 78 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.3 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCAGCGTGCTGTGGCCGGTGGAGCGAATTATGCCGGAGAGGAAGCAGGAGGATGGTAGTCCTGATCCTTTCCGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTAGAAGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCCGCTCGAGTGCGAGAGCAGTTGTGGGAGTTGGTGCGCGCATACATCGGGGAGGGGCGGGCTCTACTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGAGATCGCTTCTCTGGGGCACGATCGTGAACCGGTCGATATCGAAGGGTGCCTCGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGGCGCCAAAGGAGTCCTGGTCGATCGCTGCAAGACGACGACGCTATCGGACCTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGCAGTCTGGTAGGGTCACTCGTCGTTGGGATTCCAAGGATCCGCAAGC # Right flank : CCGTGGCTCACCCCGCCGACACCTCCATCCTCGGTAAACCCCGCGCGAGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 992-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRT01000040.1 Actinomyces naeslundii strain G127B G127B_contig045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 991 29 100.0 32 ............................. CAGCTCTTCGCCCACAGCACCAGGGGCCATGT 930 29 100.0 32 ............................. CGCACCCTGCACCGCAGGGTCGCCGCCGGGGC 869 29 100.0 32 ............................. GCGTTCCAGGCGGTCAGGATGGATGGGAACTC 808 29 96.6 32 ............................C CCGGCGTTCTCGAGTTTGCCGAGCCCGTTGCA 747 29 100.0 32 ............................. TGCCAGATCCGGTGCGGTGACCACTACCTCCA 686 29 96.6 32 ............................C CGCAGCCACCGCCGCAGCACGACGCCGATCCT 625 29 100.0 32 ............................. GCGCCCGGCTCCTCACCCAAGCCGGATACCCC 564 29 100.0 32 ............................. AGTAGATGGTGACGGCCTCGGGGCCGTAGTAG 503 29 96.6 32 ............................C CGACTCGCCATCGCCTCCGCGTCAAAGACCAT 442 29 100.0 32 ............................. TGCTTCTTGTAGGTGTTGTCACCGACCTTGCA 381 29 96.6 32 ............................C GCCGTGCGCCTGTGACGGTCACGTGCCTAGCA 320 29 100.0 32 ............................. GAGAGCACCAATGAGTGACGAACTGACCTCGA 259 29 96.6 32 ............................C GGGGGCTCGTCCTTGAACTGACCCCCGGTGGC 198 29 100.0 32 ............................. CTCGCGTGGGAGGCGGCGGGTGTGAGCCTGCC 137 29 96.6 32 ............................C GCGCTGGGGAACCGACTCGATCCAGTTGATGA 76 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GGGGATGATCCGCGCCTCGGGGTCTCTCCCTCGACGGGAAGGC # Right flank : CCACGTAGGTGACGTTGTCCGACAGGCCCAGGAGTAAACCCCGCGCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //