Array 1 19599-18243 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLI01000036.1 Neisseria meningitidis strain M19901 M19901_WHA3811A7_cleaned_ctg_7467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19598 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 19532 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 19466 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 19400 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 19334 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 19268 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 19202 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 19136 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 19070 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 19004 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 18938 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 18872 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 18806 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 18740 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 18674 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 18608 36 100.0 30 .................................... TTTCGAGCCGAACCAAATCAAAGAAGCCGA 18542 36 100.0 30 .................................... ATCTGCCGATCAATCAGGTCGGTATCAAAG 18476 36 100.0 30 .................................... TGCTTTGGAAGGCCATTACCGCGACATTGC 18410 36 100.0 30 .................................... GTTCGTTCCACACTTATGCCGCGCGCGTCA 18344 36 100.0 30 .................................... CATTGGTTTCGTTGTTTTCAAGGCATGGTA 18278 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //