Array 1 26400-27841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHODS010000027.1 Bifidobacterium breve strain MSK.22.107 NODE_27_length_27881_cov_419.448, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 26400 33 100.0 34 ................................. AATAACTCTCAAATCCTCAACATGATTCGCAACG 26467 33 100.0 34 ................................. CTCTGCCGTACGGCGCAGATAGATGAATTGCCAT 26534 33 100.0 36 ................................. CCGCATATCCGCCCTGCTTGGTAAACGTCGTATCAG 26603 33 100.0 34 ................................. CGCTCGGATGCGGTCGAGTACGCCATCGGTGATA 26670 33 100.0 34 ................................. ATCCCCATCGAGTCCGAACGCGACAAGAACAACG 26737 33 100.0 33 ................................. AAGAGCATCGCGCATCTGACAGACGACGGCAAC 26803 33 100.0 34 ................................. AATATCCGCGGTCACTTCTACAGTTTCCGTGCGC 26870 33 100.0 35 ................................. ACCGTGGATAAGCCCAAGTCGGCCAACAGTCTGGC 26938 33 100.0 35 ................................. CTACAGTCAACAGTCCGCTGACTGGGCGTACCAAA 27006 33 100.0 34 ................................. ATCGTAAATCGGATAATAGTCTTCGCTCAGATGC 27073 33 100.0 36 ................................. ACGTGAAACACAACAGCAGTGGTTTGAGAAGATGGA 27142 33 100.0 36 ................................. AGCATGATATTACGTTCGGCAGTTGCTATGTGACGC 27211 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGGC 27277 33 100.0 33 ................................. AACTTGTCCAACGGCATCATGGGCGTGCTGGTC 27343 33 100.0 34 ................................. GGTCTACGGCTACATGGCCGTGGCGGCCACGCAC 27410 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27476 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27542 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27608 33 100.0 33 ................................. GTCAACGAATGGTACGCGAAGGCATGCGACGAG 27674 33 100.0 33 ................................. CGCGCCGGGATGCTGCCGATCCTCGTGGGCGTG 27740 33 100.0 35 ................................. TTTTGTTGCTGGAATTATAAACACATTCTAGTGGG 27808 33 78.8 0 ....................T..CTG..C..TA | T [27827] ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAATGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : GAAAGTGGGCCGTGTGAGCGTGTGGAAAGTCTCCAGATGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 111-2097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHODS010000018.1 Bifidobacterium breve strain MSK.22.107 NODE_18_length_55949_cov_434.585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 111 33 100.0 34 ................................. CGCTCCAAGGGGCCGTCACCGGCTACGGCCACTG 178 33 100.0 36 ................................. AGGCTTTGGCGAGATACCAGGCGGACTTGTCCGCGG 247 33 100.0 36 ................................. GTCGCGGTAGGCGACGATGAGGCGGCGGACCGTGTC 316 33 100.0 36 ................................. ACCGGCTGGAACACGCAGCCGGATGGCAGGGGCCAG 385 33 100.0 34 ................................. GGCAACCTTTGGGACGGCGCGCACTACGGCGCGT 452 33 100.0 34 ................................. CCGTACCTCCTCGACGTTGATTCTGCCTTGCCGG 519 33 100.0 35 ................................. CAATACTCGTGAATCGAAGCAAGGAAGAAATTCCA 587 33 100.0 34 ................................. GCCAACTATCGAACCATCGTCTGCAAACACTTGC 654 33 100.0 34 ................................. ACGACAAGACTGTACGGGGTTCGATTCCCCGCGA 721 33 100.0 34 ................................. TTTTCGGTCACCATGGTGTTTCTATGACGCAAGC 788 33 100.0 36 ................................. AACGCGAGGTTCGCGTACTGCAACGGGGTGCGCGGG 857 33 100.0 34 ................................. CTGGCCGGTGGGGCCGGTGTCGCCTTTGGCCCCG 924 33 100.0 35 ................................. GCCGCGAAAGGCAAGGCGAGCAAGCGGATCGGCAA 992 33 100.0 33 ................................. CCCACAGAACCGGCACGAGAGAACTCGACGAAG 1058 33 100.0 36 ................................. CGTTTGGGTGTACCTCGAATCGCATCCGGTAGGCGG 1127 33 100.0 34 ................................. CGCAAACGATTGACGAGATCGTAGACATTGGAAA 1194 33 100.0 33 ................................. GGATCGTCGGCCGTGCAGATGCTCGAATGGAGC 1260 33 100.0 34 ................................. TTACCAACCCCGGAAGCAAGGCCGACCCGACCAT 1327 33 97.0 35 ..................G.............. AGACTGTTCGGCGGTGGTGGCATCGACTGCATCCT GGG [1345] 1398 33 100.0 32 ................................. TGCGTCTCCAGACCGATCGGAATGGTCTCCTG 1463 33 100.0 34 ................................. GGCGAATACAGCCCTGCCATGGAATCGTCCATGA 1530 33 100.0 34 ................................. ACGCGCGACGTGATGTACAGGTGATTCCGCAATA 1597 33 100.0 33 ................................. CGTGCAAGCACCCCCGGAACCCGGCAGTTTACA 1663 33 100.0 35 ................................. TGCCGCAGGGCGAAACGACCTATATTGCGGTGATG 1731 33 100.0 34 ................................. GATTTGATGGGCATCTCCATGTGGATGTCCATAG 1798 33 97.0 35 ....................T............ AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1866 33 97.0 33 ...................A............. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1932 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1998 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 2065 33 87.9 0 .........................G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 99.3 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CTCAAACGGACTAAAAGAAACGCCGAAACGGCCCACAAAAATTTGACAAAACACACGGGGAGCGTGGATTGAAATGTAACCACCGGCACACCACCGCAATTGACCGGCGGG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACATATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //