Array 1 98906-98544 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI519397.1 Nocardia sp. CNY236 K940DRAFT_scaffold00019.19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 98905 30 83.3 36 .CGACA........................ ATGGTGCCTCGGCCAGCGCGGCCGCGGCCGGTGTCG 98839 30 100.0 38 .............................. ACGATTCGCACGAGCGGTTCACCGCGGCGGCGGCCCAT 98771 30 100.0 35 .............................. GGCAAACCACACCCCGCCAAACCGACACCACCCGC 98706 30 100.0 38 .............................. TGAGCATGCGCGCGGTGATCCCTGGAGGCGACCGATGA 98638 30 100.0 35 .............................. GCCGAGCGTTCGATGACGTAGCGGCCCAGCGGCAT 98573 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.2 37 GTCCTCATCAGCCCTACGAGGGTTGGCAAC # Left flank : CGAAGAACACTGTCCGGCCCCGTTGCCAGCCGACCCGCTCCATGATCACCGTCGTCGGCATATCGGGAAACTCCGCCAGCAACTCCCGGATCGCCGGCTCGAACTCATCGACCACCGAACCCTTCGGCTTGCGCCGATATCGCGGCGGCTCATGCGCCGCCAGCGCCTTCTTCACCGTGTTCTTCGAGATCTTCAACCGGCGAGCTATCGCCCGGATCGCCATACCCTCCGAGCGATGCAACCGGCGGATCTCCGCCCAGTCCTCCACGTTCAACACCTCATGATCGTTCACGGGTGGGTCAATATTCACCCGGAACCAGAGGGTCAGTATTCAGCCGGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTACGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 172-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXVD01000041.1 Nocardia sp. CNY236 K940DRAFT_scaffold00035.35_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 171 30 100.0 34 .............................. CGAGGCAACTCGCCGACGCCGGCGCCGCGGACGA 107 30 100.0 38 .............................. CCGGCGCCCCCCTTGGAAGTCACCAGGAATGACACACC 39 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTCCTCATCAGCCCTACGAGGGTTGGCAAC # Left flank : GATGGTTGGCGTTCGCGACTCCAAGAACCCCACCGGCCCGGCGCTGGTGTTCACTCCCGGCGAGTGGGATGCGTTCACGGCTGGTGTGGCGGGTGAGAATTTCAACCGGCCATAGCGCGGACAATGTCCGAATCGGTCCGGTGGAGCCTCCAGCGGACCGATTTTCGATCTATACCGCGCTGAGGCCAAACGAACGCTGTGAATCCCTCTCTCGGATTCGGCGATCCGGCTATCCATGCAGGGGTCCGGGCCGCACGCTCCATGCCTGCGAGGCTACGTGGGACACCACGCCAGGTCGATGCCTCGGGCCGCTCGCATCGTCGCGATTGCTGATCGAAAGCTGCCCGTCTGACCTCCACCTGACTGAACCGTCGTTGATCATCTGAGAACAAGATCATTGCAGCGACACGCCGGACACATTTACACTATCGCCACTCTGCTGAAATCACCCCCCGAAAACCCCACTTCGCTAGGCTCCCTACCAGCGGGTTTACCGTGGG # Right flank : CGAAGTCTGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTACGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 10773-11249 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXVD01000047.1 Nocardia sp. CNY236 K940DRAFT_scaffold00041.41_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 10773 37 100.0 35 ..................................... GCCCCAGTCTGCCCAGGATCAGCGGTATGCAATGA 10845 37 100.0 36 ..................................... ACCGATTGGCGTCAGCTACCTGCGATGTCGGATGCG 10918 37 100.0 38 ..................................... TTCTCGGGCGGAAACCGCTACCGGCTCGACCGCGCGTC 10993 37 100.0 35 ..................................... GCGCCAGTCTGCCCAGGATCAGCGGTATGCAATGA 11065 37 100.0 36 ..................................... TTGGACTTGAGACTGGGTCAGGCCAAGATCGTCGCG 11138 37 100.0 38 ..................................... ATCGGCAGGTGGTTGCTCGACGCCGATTCAGCTCCCGC 11213 37 94.6 0 ......................A.............G | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 99.2 36 GTGGCGGTCACCCTCACGGGTGGCCGAGGATCGCAAC # Left flank : CTACTCCCTTCGATCCAGGCACGACTACTCGCGCGGCACCTGCGAGCCGAACTGCCCACCTATCTGCCCTGGACGCTATAGATGGAGCTCCTGCTTACCTACGATGTCTGCACCACCACTCCCGCAGGAAGGCGAAGACTCCGGAAAGTCGCCAAACTCTGCGAAGGTTATGGACTGCGCGTACAAAATTCCGTATTCGAAATCGTCTGCACCGAAGCCGAACTGCTCATCCTGATCGACAGCATCCACCGCCTCATAGAGAACACCGAAGACAGCATACGGATCTACAAAATACCCAAAGGTTCGTTCAAATCAGTCCGCGCCATCGGAACCGCCCAAGTACTACCACACGGCGACCCGCTGATCCTGTAGCTAGGAACCTCCAGTGCACATGGATTCCCAGAGAGGTTCCGAACTGGCGAACAGCGGCTATCGTATTGGAGCTACTCGAAACAGTGCCTATCGCGCGGCCCGGTCGACATCCGCCCAGTTCGCGCGCG # Right flank : GCCAGGAAAAGTCCCCACCTCCTTGGGGGTGGGGTTCAGTTCAGGGGCGGTCACCTCGCTTGATGCGGTGTTTCATGCGGTAGGAGTCGCCGTCGGTGATGACGACGGTGGCGTGGTGCAGTCGGGTTGATCGAGCGCTGGTCGGATCTGTCGGAGTGGCCGCAGATGTTGGTGCGGGCGGTCATGTTTCGGCTGGTGGTGCATGCGCTGCATCCGCGTTCGACTCCGCGGGCGTTGCCCGGCCTCGCGTGAACCGCCGATATGGTGCGACTGGTCCTCTGATCTCGACGGCCCGGCTCATGATGCGCGGAGCCGGGCCAGGGTGGCTCGGTTGCCGTCCGGATCCAGGGTGATCGCCGCCGCCCACGCATGCGCCGTAGCGGCCCGCCGGTCGAAGAGGTCGATCCAGGTGTCGACGCACCCACGGGTGTCGTCCACCCCGGTAGGGGACTGTCCGAGTTCGGGTAGGTGAGCGTAGGTCATCGACGTATACGAGCGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACCCTCACGGGTGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.40,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //