Array 1 17426-18618 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSDG01000027.1 Pseudoalteromonas sp. HM-SA03 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17426 29 100.0 32 ............................. TAACTATAACATTTATCAAATTAGACCATTTT 17487 29 100.0 33 ............................. TCGTTCGCCTGATTCTGCATGTTCGTTTGCTCC 17549 29 100.0 32 ............................. GGTCGTTATCACGATTTTATAACGTGCGATGC 17610 29 100.0 32 ............................. TTCTAGTGTCAACCGAAACAGCCTGGCTTTGG 17671 29 100.0 33 ............................. GCTATTTACCTTGGCACTAGCTCACACACTTGC 17733 29 100.0 32 ............................. TCTTCTACAAACATGGGCTTTGCCTCATTGTT 17794 29 100.0 32 ............................. TGACTCATGCCAGTTCTAACCAATGATTCAGC 17855 29 100.0 32 ............................. ACGAATGCGCGATTAAAGACGTTGAGGGTGGT 17916 29 100.0 32 ............................. CATAGGGATAGCGCTATCAAGGGCTACCGTAA 17977 29 100.0 32 ............................. AAATGCGATGATGTTTGACCAATCGAAACAGA 18038 29 100.0 32 ............................. GCTGACATCAACAAACTGATAGTTGAAATGAC C [18043] 18100 29 100.0 32 ............................. TCATCATCTCTCGCTATTTCTGACTCTATTTC 18161 29 100.0 32 ............................. ACTTGGTGCTGCTTACTGAGCGTGAACACAGC 18222 29 100.0 32 ............................. TACTACCAGCAGTATCCAAGGCCGGGATGAAA 18283 29 100.0 32 ............................. GGATTTGTATATTTCAAGGGTTGGCAAGGTTG 18344 29 82.8 32 ..........T.CGGA............. ATACGGGAGCACCAATATAACGGATAAAACTA 18405 29 82.8 33 ..........T.CGGA............. CCCATGCGTTTAATATCTGCATCACTTAGACTC 18467 29 86.2 33 ..........T.CG.A............. TTTTAGCATAGCTACAGCAACAAGAAATAAACC 18529 29 82.8 32 .........AT.CG.A............. ACTCTTTTTTACGAGATGCACGAGTCTTGGTC 18590 29 82.8 0 ..........T.TG.A............T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 95.9 32 GTGTTCCCCGCAGACGCGGGGCTAAACCG # Left flank : AAGAAGCTAGAGCACACAGCGTTATTTGTGAACTAGATGGCGAAGCAATCGGGTTTGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGTCTTTATCTTGAAGACTTATATGTATCACAAGATAAGCGCGGTGTTGGTGCAGGTAAAGGGATCATGAAATACCTCGCAAGACTTGCATTACAAAAGGATTGCGGTCGCTTTGAGTGGGTGGTACTTGACTGGAACAAACCATCAATCGACTTTTATGAAAGCATCGGTGCTAAAGCACAAAACGAGTGGATTATTTATCGCCTATCAGGGCAAGAGCTCATCGATTTTGCTGAGCAAGTATAGTGAAGTTTATTGGCCTGTTGGCTATACATTATTTGAAGAGAAACCCCGATCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAATATTGTAAGTGTGATTTTTATTAATAGAAACAATAATGTATTTTTAGA # Right flank : TGAGTTTTTCAGGTCTGAATCATGTGTTGTATTCGTCCGTGAAGCAGCATCCTTCACGTATCCATGCGCTCACCTTAGCAGGCTGCGAAACGGTGATGACTCCAGACTTCCTGTCTTTCGCCCTTCGGGTCAGCTGAGCTGTTCAAAAATATTCCAGATATTTTTGTCGGTCCTACTTCGCCCCCGCACACACGGGGCTAGCTAATAGGACATTTCGGTAGGGAGAAGGTGGTGGATAGCTTGGCTGGAAGTGGTGGCAGGGTGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCAAAGTTGATTATTAATCTACCATCAAAAAAATGCTAGCGTGATCTCACTGTCAGTTTGTCTCAGGTCAATGACTTACTTTATTTGTTCTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATTTTAGATATATTGAAGCGGTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGACGCGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29037-29983 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSDG01000027.1 Pseudoalteromonas sp. HM-SA03 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 29037 29 100.0 32 ............................. ATTTTTCCATAGCGAAACTAACGGCGTGATGT 29098 29 100.0 32 ............................. CCTTGTTAAACCCTATTGCTACTTTGCAAAAA 29159 29 100.0 32 ............................. CCTTGTTAAACCCTATTGCTACTTTGCAAAAA 29220 29 100.0 32 ............................. GAACTGTTCAAACAGTTCGACAGCCTGATCAC 29281 29 100.0 33 ............................. AAAAACATCTTGACCTTGGGATTGTCTGAAGCC 29343 29 100.0 32 ............................. TGTGCCGATACCAGCGAAATCGAACAAACAAG 29404 29 100.0 32 ............................. ACGAAACTGAATACGACATGTCGCAGACCTGC 29465 29 100.0 32 ............................. ACGAAACTGAATACGACATGTCGCAGACCTGC 29526 29 100.0 32 ............................. CAGGTAGAAAAGGCCAGCCCGCTCAACATCAA 29587 29 100.0 32 ............................. TAATCAAAAATCATTGCATAGACACAGCATCA 29648 29 100.0 32 ............................. TTTTTTTTGGTGAGCCCCGAGAAATTGTACCT 29709 29 100.0 32 ............................. CTAGAATCATCAAAACCATGAATAAACAACTG 29770 29 100.0 32 ............................. TTGAGAACGAGTGTCAGGGTTACCGTCGTTGT 29831 29 96.6 32 .........................G... TTATAGTGATCTTCATCAGCATTCGCTTTAGT 29892 29 100.0 34 ............................. GCTTTTTCTACGGATTATATTTACCGTCCATAAC 29955 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : ATTGGTGACGAAGGCCATCGCAGCGGAGGCCCACTATGAGTATGTGTATGGTTGTCACTGAGGCAGTGCCACCAAGATTAAGAGGTCGCCTGGCAGTGTGGCTGCTGGAGATCCGTGCCGGTGTGTATGTGGGTGATGTAAGCAAACGCATTCGCGAAATGATTTGGTTTCAGGTCAGTGAGCTGGCGGAAGACGGCAATGCGGTTATGGCTTGGGCAACTAATACCGAGTCGGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCTGTCGATTTTCAGGGCCTGAGATTGGTGAAGTATACGCCCAGAGCAAATGATAATCCGGGAGCTGATTAGCGAACTCCCCTCGTTTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGAGATTAAGATTTTTACCTCATAATGAGAGGTACTTTTGTACCTAAAATTTTTGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : GAGCGACTCAGGTCTGGACCATGTGCTGGAATTCGTCCGTGAAGCAGAACCAGATGCTCACCTCATTGAGCGGTGAAACAGCGGCAATTCTAGGTCCGCCAGTAATCTCGGGATTAAGTTATAGCCATCATTGTTAGCTAGTTATTTATCCACATGACCTAAATCACGCTCAGGATCTAACAAATCTCTCACCCTTCTTTTGAGCACTTTGGCTTCAGGAAAACCTTCATCCGCCTTTCGGCACCAAATTAACGTATCGTTGTAGTAAATTTCGAATACGCCTTTACTTGCAGGCGCGAGCGCAACCTGCTTTAAATCGTCGGAGAAAGTTGAAAGCAACTCTTGTGCAAGCCAAGAAGCTCGCAGCATCCATTGGCAAAGCACGCAATAATGAATTGTAATGGAAGGTTTTTGCATGAATTGTAAGCGTCGCCTGAACCACACCTAGCTACTGAATACGCTCAGCCTATAAAGTACAGCTCTGACCTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //