Array 1 4264284-4264033 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014800.1 Rhodovulum sulfidophilum DNA, complete genome, strain: DSM 2351 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 4264283 37 100.0 36 ..................................... CTGCGCCGCGAATTGCTCGAACATCTGCGGCATTTC 4264210 37 100.0 35 ..................................... TTGCCGCTCAGCGGCAAGGCGTGCTTCGCGCGCGG 4264138 37 100.0 33 ..................................... GGTGTCGACCGCGCGGCCGTTTTCATACGGCAG 4264068 36 89.2 0 ...............................C-..GT | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 97.3 35 GTTCGAACGCCATGACCGCGAGGACGCGGATTGAGAC # Left flank : CTGCGCCACGCGGTCGATGACGGATGGAATGGCCAGCGGCCGGGTGCCGCCGTCACGTTTCTTCAGGTCGATCCGGCGCAGATCGCCCGGACGGTAGCGGCCATCCAGCAGGGCCCCGGACAGCGCAGTCAGCCGTTGCGGCGCCCGTCTGGCGAAACGGTCGATCGTCACACCGTCGCCGCCGGAACAGCCCCGGTTTCCGCGCACCTTTTCCCAGGCTGCGGTCAGATTTTCCCGATTGGCGAGTGTGACAAAGAGGTCATCTGGCGACTTTGACACAGCCACGCTCCTGTGCTCTGCTTGCAAAAAAGCATGCGGGCATCGGGCCATTTCTGTCAATTCGACTCCGGAAAATCCGGGAACTACTTGGAATGGAAGCAGGAAAACGCAATAAAATCCCGTCTGCTCCGGCTAATCCTGGCGCCGTTTTGGCCGAAGCAGGTTCGGGTCCGGGAAGGGAGAAGAAAAGAGACGCGAAATCAAGAGGCTGCAGAGAGGCA # Right flank : CGGAGGCGCAAACCGATCCCAAAAGGGCAGACTTTTCCCGTTTCGGGGGGAAGTCAGTCGGCTTTTTTGGCGCTGACTTCGCATTGCCATTCATTGAGGATTCTGCGGATCATTTCCGGCCGTGTCGGAAGATCGGGCTGGTTCCGGCGGGCATCGTCTATGGCCTCGATCAGCTGCCGTGGCAGGCGAAGGTTGATCGCTTCCGTATCGACAGAGGGGCGTCCGCGCTTTTTTTCCATAATCCCGAATCTCTTGTTGATTTTCGGTTTTACGGTGCCATATAATGCGGGCATGGGCAAGGGCTCCTACCCCCTTGCCCCGCCCTGACCACAACCGATCTAATCAGGAGATCGACCATGGCTGACGCCGTCCTTAGCATCCGTGCGGTCACGGATGAACCCTTGTACTTTTCCCATTCTCCCGCCTCGCGCAGCTTCTCGCGGTTCATCTCGGCGCTTGGTGCCGCCATCGAGTGCGAACGCGACATCGAAGGGGCAAGC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAACGCCATGACCGCGAGGACGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.20,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 4266751-4266494 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014800.1 Rhodovulum sulfidophilum DNA, complete genome, strain: DSM 2351 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4266750 37 100.0 41 ..................................... ATGCGGCCCGTCCGCTTTCGGTGAGGCCACTTTTGGGCCTT 4266672 37 100.0 33 ..................................... TTCTGCCAGATCAGCAGAGCCTGCTGGATCTTG 4266602 37 100.0 33 ..................................... CCACAAATCATGACGGCGCAGGAAGTATAATCT 4266532 37 86.5 0 ..........................G...A..C.CT | AC [4266500] ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 96.6 36 GTCCGTGACCCATGTCCTCGAAGACGAGGATTGAGAC # Left flank : GGAACCGAGTCGCCATAGACTCGGCTGCGGGACAGGCCGTCGGCGCCGATGGCATAGACGCGCAGACTGTCGCCGCGGTCCAGATGGGCGGCAATGCGCTGTGCCAGGGCATCGGCGCGGGGGCGGGACATGCGCGCCTCGAAAACCGAATACTGAACGCGCGTTGCCGCAGCCTCGAGCAATCCGGCCACCTTGCGCCGTCTCTTTGATTGCGACACGTCATAGGTGAAGACCATCAGCATCTCGCCCCGCATCGCGACAACTCCGGCATTGATCGCAAGGATGAAACCAGCCTACGCTGGGCCTGCGATCCGGTCCAGACCGGCCGGAAAACCGGAATTCGTCTGCGGATTTCCATGTAACGCCTTGCAGGAAATGGGAGAAATAGCCACGAAACAACCATGTTCAGATGAAGGCCTGGGCCAGATGGACGGAATTTGGCATCGATCCCGGAAAGGCAGTGCTTTTTCCCTTGCAGGGCAAGTGGTTCTGGAGGGTAA # Right flank : GCTTCAGGGGGTTTGCAGGAAAGGCCGGAAGGGCATCCCCTCAGGGTCCCGCATATGGCGGGCGAGGGCCTGTGCCTCTTCGCGCATAATCCAGCGCCAGGTGCGGCGACGGCCGGAATAGGGGCTGGTCACAAGCCGCCCGACTGCAGCCTCATAGCCGGAAATCAGCGCGCCGATGGCGTCGCGGCCCAGCCGGATGCCGCCCGGAAACGAGGTCATCATCCCGGTCCTCAGCCGGTTCTGGTTGAACAGCGTTACCGCCAAACCTTCGGTCAGGGCGGCGCGATAGCCTTCCATCAGGTCCCAGACACAGGCCGCGCTGCGATCGGCCGGGACATGCAGGACGCCAAACCCCGGATGCAGCCCGGCATGGGCAATGGCCGCGCGGATGTCCCGCTCCAGCATGGCGGTCAGCCAGTTGATCGCCGCGTTCAGCGGGTCGGTCGCGGGCCGCGTGCGGCGGAAGGGCTGCGGCGCGGCGGCGCACAGCCGCCCGAGGG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGACCCATGTCCTCGAAGACGAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 4275534-4275931 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014800.1 Rhodovulum sulfidophilum DNA, complete genome, strain: DSM 2351 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4275534 37 100.0 36 ..................................... TGACAGCAGCATCACGCGCGAACCTCACTTCATCAG 4275607 37 100.0 34 ..................................... TCGACGATTTCGCCGATGGTGTCAGCGGGACTGA 4275678 37 100.0 34 ..................................... AAGCCGTTATCGTCAATCAGCACATTGCCGCTAT 4275749 37 100.0 35 ..................................... CATGGTCGTCTCGTCGAGGCGGGTCTTCTTCGTGA 4275821 37 100.0 37 ..................................... CTGGCCAGAAGACCGTTGAGGAAAGAGCTTTCTTCTT 4275895 37 83.8 0 .............................C.CTCTT. | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 97.3 35 GTGCGCAGCCCATGTCCGCGAAGACGCGGATTGAGAC # Left flank : CATACGGCCGAACCTTGCGCCGCGCGATGCGGCCGAAACCGTCGAATGGACCGAGGCCCATGGCCGCGACCGGCTGACCCCCTGGCTGGAGGCCTTCGAGGCCCTGATGGAGGAAACGGTCAGGGGCTGGAAAACCTCTGCCCAGGTTCAGGCCCTGCTGCGTATCGCGCGGCCCCGCGGCTGGGCCGAACAGGGCACGACCTACCTGCCGTACCAGCCCGCCGGAGAGCGGCAGGCCGAGCATTTCGCACGGCTGCGGAAAGTCTGCGGCCCGGGCGCGATCCGCGCCCCCGACCGGTTGCTGCCCCCCTGAGCGGGAAAAAAACGGACAGGGCCGGAATCGACTACGGATTTTTTGACAAATCCATGATATAAATTTGAAATCCCTCGTTTCGGGGAGGTTTGGACAAGGAGGCCAGGCAGATGAAAGCGGCGCAATTCCATCAACTGCGGAATGGCTGCAGAAATTATCATGAAAATCAGCATGCTCCAGAGGGTAA # Right flank : CTCCGGCGCCGCAGGTGGATGGTCGCTTTACCCTCGGTTCCGCGCGGCATAGCCTGCGCGGACGCGTTTCTCAGGAGGCCAGGCGATGCCGGATGCACAGAGCGATCATATCCCCGCCGACCGGATCCCGGTGAACGGGCTCAGGCTGCTGTTCCAGTGGCCGCTGACGTTGTCCGCGCCTCCGGGCACGCGGTTTTCCGACGACTGGATCGCCCGCAGGCTGGCCGGCACCCGCAGGGCACTGGATACAGCACCGCTCTGGACGCGGCTGGACGACCCGCTCGACCTGCTGCCCCAAGCCGGGGAGTGCGATGGCGGCGCCTATGCCGAATTCGCGTATTTTCACGATTTCACCCAGTCGTTCCTCTATCCGCCCAAGGGCAAGACCGCCCCGGCCTATGACCTGTACCAGAGGACCGATGTCACCGGCCTGGTCGCCAGGATCGCCGGTCGCGGCAGCTTCGAATTTGCCGTGCGGCGCCACACGCTGCACCTGTTCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCAGCCCATGTCCGCGAAGACGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //