Array 1 1722-2838 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOI01000033.1 Actinopolymorpha cephalotaxi strain CPCC 202808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 1722 29 100.0 33 ............................. AGCATCTGCCGGTTGGCGTCGCCCTTCTTGGTG 1784 29 96.6 32 .................A........... AGCGGGACGAACCACTGGCACCCCGCGCACCA 1845 29 100.0 9 ............................. GGTGCGCTC Deletion [1883] 1883 29 86.2 32 .AC..GG...................... TCGCCTGACCAGACACCGGCCGTACGGGATCC 1944 29 100.0 32 ............................. CCGGCGCCGACGTCGGACAGCGTGCCCGAGCC 2005 29 100.0 32 ............................. GGATACGTACGCGCCTTCCACGGCGAGTGGGA 2066 29 96.6 32 ............................T CGGCGCTGTCGTGGTGGCAGGCCGGACCCGGA 2127 29 100.0 32 ............................. GGTGAAATCCGAAGGACGCGAAGCGCCCTTGA 2188 29 100.0 32 ............................. GACCTGATGCTCTGCGGCGAAATGTTCGGCCT 2249 29 96.6 32 .....T....................... TCCGCGGTCGAGCGAATCGAGCGGCAGGCAGC 2310 29 100.0 32 ............................. CCGGAAATGTCGATCGGCGCCGCGCTCGCGGT 2371 29 100.0 32 ............................. CACGAGGGCCAGTTCATCCTCAACGACTGGAC 2432 29 100.0 32 ............................. GTCGAACACCAACTGGAGAAGGACTCCGCCGA 2493 29 96.6 32 ............................T GGGCCATGACGGCGCTACAACGGCCGGCCACG 2554 28 96.6 32 .....................-....... ATTAAGCCGGTTGGCGTTGTGCTCCACACCGA 2614 29 93.1 32 ..............A....T......... GACGGCAAGCCGCGCTGGCAGTGGAACGTCAC 2675 29 89.7 47 .......T...A................T GCGCAGTGGTACGCCGCGGCGTTCGAGGCGGCGTGCACCCGCATCGA 2751 27 93.1 32 ........--................... GCGTTCGCGGTGCCGCTGGTGCCGCCCGAAGT 2810 29 82.8 0 ...T.............C....C.G..T. | ========== ====== ====== ====== ============================= =============================================== ================== 19 29 96.2 32 GTGCTCCCCGCGTACGCGGGGGTGATCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCA # Right flank : GCGGACGGCGCCGGGGTTGATGCGCATTTCCCATCCTCGAGGGATCGGCTCTGACTGACCCGGTGTGACGACGAGATGCGTAGCAGTCCGTAGTCTTTTCGCCTGTAGCTGACGGCGCGAAGTAACCGGAGTGATCGAAAAGCAGGATGGTTGTCGGTGCCGTCGTGTTAGATGACGCCCGTGCACTTGAACACGGGGAAAGTGCCGGTCGGACCGGCTGCAAGTGTCTGGGCGAAGTCGAAGCGAGATGATGGCAGCTGGCTGGCGTTGTGGCGTCACCTGGACGATAGCGCCGCGGTTGCTGGTCGGCTGTGGGATGAGTGGCTGCCGCGTGCGGTCAAGCAGGTCATCAGTGCCGGCCTCCCAGCGGGGGAGGAGGACGGCCGCGTCCTGGCAGTGTGGCTGGCTGGGATTCATGACGTGGGGAAGGCAACCCCGGCGTTCTCGATCCAGGTCGAGCACTTGGCCGATCGGATGCGCGACCACGGCTTGGCTATGAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14286-14681 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOI01000033.1 Actinopolymorpha cephalotaxi strain CPCC 202808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14286 29 100.0 32 ............................. CCGCAGAGGCCGCCGAGGTCGCCAAAGCGCAC 14347 29 100.0 32 ............................. GATCCGCCGGTCGCACCGGCGCCCGTGGTCGC 14408 29 100.0 32 ............................. GCCTGCTACCGGTGGAACCCTTACGACCTCGG 14469 29 100.0 32 ............................. TTGTTGCGTTCCCGCCGACGCTCGAGCTCTGC 14530 29 100.0 32 ............................. GACCCGATGTGGGGGCAGGAAGTCGCCAAGCC 14591 29 100.0 33 ............................. TCGTGGTCGTCCCACACGTAGGCCAGCGGCGCC 14653 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 GTGCTCCCCGCGTACGCGGGGGTGATCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : GTGACCCTTTGGACTTGGACGCAATTGACGCTATTGCCAGAAACGGCCGACGCCGTTGGCTCCGGCCTGTTCCGCCGAGGTTAATCTGGCAGTTGGGTCCAATGCCACCCCGCCCTCACCCTCGGCCTGGCGCTCCAACCCGACGTACTCCGCGAGATCGCCAACATCCCGGGCGGCCGCGGGAAAGGCCTCCTCGGCCGCATCCTCTACGCCCTCCCCGAGGACCTGGTAGGCCGCCGACAGATCGGCCCACCACCCGTACCCGCCGACGTCGCCGAGGCCTACGAAACCAACCTCGCCGCGCTGACCCGCTCCCTGGCCGACTGGACCGATCCCGCCGTACTCACCCTCACCCCCGAAGCCGGCGAGCTCGTCCTGGCCCTGGAGGCCGAGACCGAACCCAAGCTCGCCGCCGGCGCCGAGTGGAGCCACGCCCGCGACTGGTACGGCAAATGGGTCGGCGCCACCGCCCGCATCGCCGGCCTCATCCACCTCGCCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //