Array 1 16548-16154 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CTGZ01000054.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V47 isolate V47, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     16547	    29	 100.0	    32	.............................	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA	
     16486	    29	 100.0	    32	.............................	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA	
     16425	    29	  93.1	    32	.................A........T..	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT	
     16364	    29	 100.0	    32	.............................	CAGGTTATGCGCAAAAATTAATTCATATTATA	
     16303	    29	  96.6	    32	.................A...........	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA	
     16242	    29	 100.0	    32	.............................	CGTTCATCGGCAGCGTCACGCAATATGAAGAT	
     16181	    28	  82.8	     0	...............A.AA.....G-...	|                               	
==========	======	======	======	=============================	================================	==================
         7	    29	  96.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   ATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGC
# Right flank :  TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-14.00,-14.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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