Array 1 531768-533355 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLTE01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07710 WH-SGI-V-07710_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 531768 28 100.0 32 ............................ GGTAGCGTGGTCAGTGTGCAGCCGCATTCCAC 531828 28 100.0 32 ............................ GCGTCGCGTAGACGGATGAACTCGTTGAAGAC 531888 28 100.0 32 ............................ ATTACCCCACCACGACGACCAGACTCGCCGGC 531948 28 100.0 32 ............................ CGACTGGTCGATGGTTCGATCCCATCCGCGTC 532008 28 100.0 32 ............................ TTGATGTGCCGCTGACGCTGAAGGCAGTCAGC 532068 28 100.0 32 ............................ TTGTTGTCCAAGGTGTTGTCGCTGTGCTTCCG 532128 28 100.0 32 ............................ TTGCCGTATGAGGTGTATCGCCCGTTGAGGTC 532188 28 100.0 32 ............................ ATCGTGGACCGCATCGGCACCCGCGTTCTGCG 532248 28 100.0 32 ............................ TGCTCAAAGCCAGGGCGAACTAGTCGGCTTAG 532308 28 100.0 32 ............................ TGCGTACTCCGGTACATGCCGAAGTACTTCTT 532368 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 532428 28 96.4 32 ..............G............. TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 532488 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 532548 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 532608 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 532668 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 532728 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 532788 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 532848 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 532908 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 532968 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 533028 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 533088 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 533148 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 533208 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 533268 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 533328 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCTCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36913-37961 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLTE01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07710 WH-SGI-V-07710_contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36913 28 100.0 32 ............................ GAGAAGGTCGAGTGGCTGGAAGGCCCTCATGA 36973 28 100.0 32 ............................ ACATCCGATTCACCGGATACAGCTGGTTTTCA 37033 28 100.0 32 ............................ TGAGTTCTGAGACGATCGGCCTCGGCGATCCC 37093 28 100.0 33 ............................ ATGTCGTGGTGCTCCTTGGAGCAGGGGCGCCAA 37154 28 100.0 32 ............................ TCGATCAGACGACCGTAGGTGCGCAGGCCTTC 37214 28 100.0 32 ............................ ACTACCGACAACGCCAGGGCGTAAAGCTGCGG 37274 28 100.0 32 ............................ AACTGGTGTTCTTCGGGAACCAAGTCGGCAAC 37334 28 100.0 32 ............................ AATGCCGAACCGCTGCAGCCAGGTATCGGGCC 37394 28 100.0 32 ............................ AGGGGCATTTCCTGATCATCCGAGGAGATCGC 37454 28 100.0 32 ............................ ACGACGGCCGCCTTGCGGATCTCGGCAGCGGA 37514 28 100.0 32 ............................ TCCTGGTCGTCCTGCGCTCGTACGGCCATGGC 37574 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 37634 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 37694 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 37754 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 37814 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 37874 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37934 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46815-46486 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLTE01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07710 WH-SGI-V-07710_contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46814 28 96.4 32 A........................... ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 46754 28 100.0 32 ............................ ATCGACGCCAGCACCTGGCAGCACGACTTCAC 46694 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 46634 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 46573 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 46513 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTCTCGCCTAAATTGGTGTCCGGGATCAGTAGACCACTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 409-1576 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLTE01000040.1 Pseudomonas aeruginosa strain WH-SGI-V-07710 WH-SGI-V-07710_contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 409 28 100.0 32 ............................ AGGAGCAAAACAGTCAGCGAACAGACAGACCA 469 28 100.0 32 ............................ ATCCTGATGAATGGCAAGGCGGAAAGCTCTCG 529 28 100.0 32 ............................ TCCTTCCGCACCAGCAACGAATAGTCGGCGAG 589 28 100.0 32 ............................ TCAGGTTGTTGTTTCCGAGCGGCGTGCTGGAT 649 28 100.0 32 ............................ AGTTCCAGCATGACCGGCACGTCGCGGATCAG 709 28 100.0 32 ............................ GCTGGCTGGGATTACAGCGGTCTGACCAAGGA 769 28 100.0 32 ............................ GCGTTGTGGATGGCGCAATCGTTGAGACGCCC 829 28 100.0 32 ............................ TATGACAAGGAAACCATTGTCCTCGTCCTCAA 889 28 100.0 32 ............................ TGAAGAACACGCTTGCCGGCGAGTTTTCCGGG 949 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACGAA 1009 28 100.0 32 ............................ AGATAGCGGGCGCTTCGTCATTGGCTCCGTTG 1069 28 100.0 32 ............................ ATCACCCTGTCGATCAGGTCGATCATCCCATC 1129 28 100.0 32 ............................ GGCTGGTGTGCCCCATAGCTGCCAGCCAAGGT 1189 28 100.0 32 ............................ GCGCAGGCCCGATGCCTCGAAGCGCTGCACCG 1249 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 1309 28 100.0 32 ............................ TTGAAGGTCGCCTTGATGCCTTCTTTGATCGC 1369 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 1429 28 100.0 32 ............................ AGCTAGAGAGCTAAATCCTGCGTGGAACAGGA 1489 28 100.0 32 ............................ ACGTCGAGGGGAAGTGGGATACGCCTACGATC 1549 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : TGGGCGATCGAGCACGGCATCACGCGCGAGACGTTCTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACTGCAGGTGGTAACCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCATCAAGTAATGACTGATGTCCCGTTGGGCCTCCTGCGCCGTCAGGTAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAGTTATCCCAGCAATTCCCTCGGCGACTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //