Array 1 969060-969574 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ961402.1 Zymomonas mobilis strain ATCC 31823 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 969060 28 100.0 32 ............................ TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC 969120 28 100.0 33 ............................ AGATGGAACAAATGTGTGGTGGGAAAATACTTT 969181 28 100.0 32 ............................ CCGTGCGTCATAGACACCGGAAGGTGCGCCGT 969241 28 100.0 32 ............................ TTCTCAAAAAGGAAAAGAAATTGGAACAGATT 969301 28 100.0 32 ............................ GTCGAATAATTTTAAGCGTGAACCCGTATCAG 969361 28 100.0 33 ............................ ATCGAACTGCGTGCCTGATAGCCGATACGCTGA 969422 28 100.0 34 ............................ GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC 969484 28 100.0 32 ............................ ATTTCGTCAGTGTCCGGAGAAACGCCCGTCAG 969544 28 89.3 0 ............G.............TT | GTT [969563] ========== ====== ====== ====== ============================ ================================== ================== 9 28 98.8 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGATTAAACACCGCTGTATATTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCGGCATATCTGCCTTTGTAAGCCGTTTTAACCGCGGATAATGCGGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCCCATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAATATTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCGATTCAATATGTTACATATGAGCATATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : TTTATTGCATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTAGGGATTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCAAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACAATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132510-132896 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ961403.1 Zymomonas mobilis strain ATCC 31823 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132510 28 100.0 32 ............................ AGCCCCTACTTTGATAGGGTCACCCTTTTTCA 132570 28 100.0 32 ............................ GCCGACAGTAAAGGTAAAAGGGTTTTAGCTGT 132630 28 100.0 32 ............................ GTGAAGATATTAGCTACGATATGACAGTTTTG 132690 28 100.0 32 ............................ AGCCCCTACTTTGATAGGGTCACCCTTTTTCA 132750 28 100.0 32 ............................ TTGCACGGCAGGAGCATTTTATGGCAGCAAAC 132810 28 96.4 32 .............C.............. TTTACACTACGGGCAATAATCGTTCTCGGTAT 132870 27 85.7 0 .............C.......A.-C... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CATCGCCTGCGCTCTATTCCGCTTTCCTATTTTCTTCAGGCACAAAAACAGGATGCCGCCGCCAATAATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGGCGAGCTGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACGCCGCCTCAATTTTTGCCCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCTTTTAAAATCAACAACTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : ATTATCAAAACCGATGCCGATCATATCCCCACAGGCAGCCTTCAACATAAAAGCATTTAAAAACAACTACTTAACCACCCACATATTATACCCTTTAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGCTGAGAGCAAACGGCCTCACGCCGCCGATATCTCCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCACTTTTCTTCTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTGCGATCGCCCTCTTTTGATATAGATGCGAAACCACTATATTACGTCTTCACAGGCTGGCGAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 333142-333790 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSFP01000005.1 Zymomonas mobilis strain ATCC 31823 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 333142 28 100.0 32 ............................ GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC 333202 28 100.0 32 ............................ TTGACGCTGTGAGCGTGACGATATGCTTTCAC 333262 28 100.0 33 ............................ ATCGGGGCATAAAATAGCGACTTGCTCACCGAT 333323 28 100.0 32 ............................ GTCTGGCTGAAATGAGGTCCGACGATTTGCAT 333383 28 100.0 33 ............................ ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT 333444 28 100.0 33 ............................ ATATAGAAGATTTATCAGATACGTTGAGAATAA 333505 28 100.0 170 ............................ AAATGCAAGCAGAAAATGCGAAATATCAAGCCGAAGAAGATAGAAAAGCCGAAACTTTGGCTCTTGGAAAAGCTAGATCAGAAGTAAAGAATTAACCTAATCCTTGAGAAGATTCAAAATCTTTTATAAATACTGATTTTTAAAAATAAAAAGCTGGAAATAATCCACAT 333703 28 100.0 33 ............................ ATCCGCAATTTCTGGAACATGATCTTGCTGACT 333764 27 82.1 0 .............T......A..-.T.C | ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 9 28 98.0 50 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACAAAAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAAAAGTCGAGATTGAAAGGCCTATTCCTTTTGCAGATGAGACAGTGAGAATGAGGTTTTTATGGGTCAATCGGAATAATTATGATCGGTAGAATATGGGGTAAATAAATAACCTAATTTCATTCTTGCCATAATTTCCGATCGTTTCCTTTTGTAAAAGCCAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTTGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGGATTTTTAATTATTTACTCTA # Right flank : CTTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGATATTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCTTCGGTACGTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAAGATTATTTGTGATTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGA # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-1.73, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //