Array 1 66276-67768 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMI01000010.1 Escherichia coli strain MOD1-EC314 MOD1-EC314_10_length_157285_cov_52.6644, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66276 29 100.0 32 ............................. ATCGATATGTACGTTAGCGAGGGGATCACGCA 66337 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG 66398 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 66459 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 66520 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 66581 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 66642 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 66703 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 66764 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 66825 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 66886 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 66947 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 67008 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 67069 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 67130 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 67191 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 67252 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 67313 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 67374 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 67435 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 67496 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 67557 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 67618 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 67679 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 67740 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93468-94899 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMI01000010.1 Escherichia coli strain MOD1-EC314 MOD1-EC314_10_length_157285_cov_52.6644, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93468 29 100.0 32 ............................. CCATAAATATTATTCCAATCTGGTCGGCTATC 93529 29 100.0 32 ............................. AACGGCTACGGCACGGAGGTTACCAATCAGAT 93590 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 93651 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 93712 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 93773 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 93834 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 93895 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 93956 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 94017 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 94078 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 94139 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 94200 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 94261 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94322 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 94383 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94444 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 94505 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 94566 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 94627 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 94688 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94749 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94810 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94871 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGCTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //