Array 1 33620-34646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCJY010000037.1 Azospirillum sp. W712 Scaffold33_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33620 36 100.0 30 .................................... AGCCAACCATGGCGATCCCCGAGCCGACAG 33686 36 100.0 30 .................................... GCATGGGGACGGGTGGCGTCCTCCTGTGGA 33752 36 100.0 30 .................................... CGGGTCGACCACGGGCATGCGAGCCGCTTC 33818 36 100.0 30 .................................... CGGGGCCAGCGAGGATGTGGTGATCGACAA 33884 36 100.0 30 .................................... CCGTGCCACCCCCGCGCCGCGCTGAGCGCA 33950 36 100.0 30 .................................... GGACAAGACGCGCGGGTTTCTTTGGGTGGG 34016 36 100.0 30 .................................... TGTTCAATGCGATGCGCACGGCCTCGACAA 34082 36 100.0 30 .................................... TCCTCGGACGCCTGCTCTACCACTTCGACC 34148 36 100.0 30 .................................... CACGGACCGTGTCGCGCCACACCATCGTGC 34214 36 100.0 30 .................................... TCACCAAGCGCATGGCCTGGGCGGTGACGT 34280 36 100.0 30 .................................... TAGCACTCCACCTCCACCGCGTCGGGTGCC 34346 36 97.2 30 ................A................... AGGGTGGGCACCATCACGACCGTGCATCGA 34412 36 100.0 30 .................................... GTCGGGACCGGGGCGATAGCCGAGACACAA 34478 36 100.0 30 .................................... CCCCTCCCCCACCGGCCCTGTCCTGCTGCC 34544 36 100.0 30 .................................... AGGCCGCCCTCTCCGCATCCCAGGCGCGAG 34610 36 75.0 0 ........................T..AATGG.GGA | T [34636] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.3 30 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Left flank : GGCTTCCAGCGTCTCAAGCAAATGGGCCGGCACCGCCGCCTTGATGCCGAACAGCAGGTAGTCGCTAGGGATGCCCCGCGTGACAATCGGCCTCAGCCTGTAGGACGCGATCTGCGAGTCGCCGCGGATATACTGCGTGTAGGTATTCCTCGCACACCCCATCAGCTCGCACATTTCCGCTGGCCGGAAACCGAGTGTCATGCGGGCCGCCTCCAGACGGATGCCGACCTCGTACGCGAACCGATCCAGATCGTCGTTGGTCACGACTTCGGCTTCCATGGGGAATCTCCATGCACAGGCATTCCTCGGCATGGAAATCGGAGGGGCTATTTCTGTCAAGACGAAATAGGTTAACCGAAGGCAACACAACGTAACCGGTATTAACACGTCGTGATAACACTAGCCCGCACTGTTCATCGGCATGTTGGCACGGCCGCCTGAAAGCGCCGCGAGTGGAGGCACCAACGGCGCAACGCTCAGCCCTCCATGCGGCGCGCGTC # Right flank : AGTGACCGTCCTCAACTCGGGCGAAGTAAAATTCCCCAGGTGCGGTGATCAGCCGGCGTCCTGATCCATGCTCCTGAGCTTGGGTGGCCGGCCCCGCCGGCGCGGCGGCTGTGGTGCGGTGATCGGGCGGACGCGGGTGGTGTCCGGCATGAGATCGGCGTGCTGGCGGAGCCGATAGCTGGCCCCTTCGATCTGAACCACGATGGCATGGTGCAGCAGGCGGTCCAGCAGCGCGGTCGCGACCACCGGATCGCCAAAGACGTCGCCCCATTCGGAAAAGCCGCGGTTGGAGGTCAGCACCATGGCGCCGCGCTCATACCGGGCATTCACGAGTTGAAAGACCAGGTTGCCGCCCCCGGCGATCACGGGCAGGTAGCCGATCTCGTCGATGATCAACAGCTGAGGCCGGCACAGAAACCGGATGCGCTCGCGCAACGAGCCCTCACGTTCGGCCTTGGCCAGCGAGGCCACCAGGTCGGCCAAGGTGGTGAAGTAGACGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 37005-39216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCJY010000037.1 Azospirillum sp. W712 Scaffold33_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37005 36 100.0 30 .................................... GCCCGCTCTGCCGGCCTCCTGGAGACGGAG 37071 36 100.0 30 .................................... CGTCACCACGTCGGGCAGCTATGCGGTGCC 37137 36 100.0 30 .................................... CCGCAGCCACCCCGGTCATCAAACCGAGAA 37203 36 100.0 29 .................................... AACCCGTCCTGCGCCCCCCAGGCGCACAA 37268 36 100.0 30 .................................... ATTAGACACGCCCTCCAAGAGCGTATTCGA 37334 36 100.0 30 .................................... GCTCCGACCGCTGGACCGGCGCCGATTATT 37400 36 100.0 30 .................................... GCATGTGCTCCACCAGCTTCATGGCGAGCA 37466 36 97.2 30 ......T............................. TGATGTTCCAATAGTTCTCGGTCCACACCT 37532 36 100.0 30 .................................... GACTCGCGCCACGGGAACGCTTTGCCTCAT 37598 36 100.0 30 .................................... CATGTCCATTGCGGCTTCTGTCCACGACCT 37664 36 100.0 30 .................................... CGCCAAGGCGTCCGGGATGCTCGTCCGCAA 37730 36 97.2 30 .................T.................. AGGAGCCGCTGACGATCTACATGGACACCA 37796 36 100.0 30 .................................... ATTCCGGGACGCGCCCGCGATACAGAGCGA 37862 36 100.0 30 .................................... GCACCTCGACCTTGAAGGAACCCGGCTCCA 37928 36 100.0 30 .................................... CGTGACCCGCGTTGAATTGGTGGCGCTGAC 37994 36 100.0 30 .................................... CGGCCGGCTGGAAATTCATGCGCTCCAGGT 38060 36 100.0 30 .................................... TGCACATGGCTCACCCACGAGGCTCGCTCA 38126 36 100.0 30 .................................... CGGCGCGCTCGGCGGCGTAGCGCTCCACTG 38192 36 100.0 30 .................................... CATCGGGCCACCACACTGCGGGCAGGCGCC 38258 36 100.0 30 .................................... CCGCCATCACGGCGTCGTTGATCTCGAAAT 38324 36 100.0 30 .................................... GGCGACCCGGCATGGCGCAACCCAGGACGA 38390 36 100.0 30 .................................... CGGCTAGGTAGATGCGCCAGATGCCGGTCA 38456 36 100.0 30 .................................... GCCGCACCACGCGCACCGTGCCGGCGAGCA 38522 36 100.0 30 .................................... TGTCCCTGACGCAGCTCGCTGTTGTCCACA 38588 36 100.0 30 .................................... GCCGCAGCCTGCGGTTCGTGCGCCTGCCGG 38654 36 100.0 30 .................................... CGTCGATCTCAACGGCCGCAAGGTCAAGGG 38720 36 100.0 30 .................................... ATGTCGATCGGCTTCCCGTCGAAGGGGGCG 38786 36 100.0 29 .................................... TGATGCACGACGGCGAATACGTCGTGACG 38851 36 100.0 30 .................................... TGATTTACGCGGGATGGAGGGGCGCCGCGA 38917 36 100.0 30 .................................... TGCTTCTGGTCTAGGCCGCGTTCTCAGTCT 38983 36 100.0 30 .................................... GATGACCGCTTCAGCCTCGCATGGCGCCAG 39049 36 100.0 30 .................................... CGCCGCCGTCCGCGGTGCACAGACAGGTTC 39115 36 100.0 30 .................................... TGATGCGTTGACCGCCAGCATCCAAGCCGA 39181 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.8 30 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Left flank : CCGGACGGTGCGCAGGAAATCCTTCAGCGCGGTGTAGCCGCCCGTGTAGCCGCGGGCGCGGACTTCGCGGAGCAGACGGCTGGCGGTGAGTTCCGGAAAAGCGGTGACGCGCTCGCGCAGGTATTCCTCGTAGGGCGCGACGACGGTCGGCCTGGGCTTGCGGGGGCCATAAACCGGCGCCTCCAAGCCACGCTCGATGTACTTGCGGACAGTTTTGCGATCAAGGCCGGTCCGGCGGGCGATGGCGGACACCGATAAGCCCTGCCGATGCAGATCGAGAATCATGACAAGCTCCCCGAGTGTGACCACCGACGCCCTCCCTCCGTTCCCCGGAGGGGAGAATGGGGATCGATGGCCGCCCGCTTCGGGGCAGGAGCCCCGTCAGCAGGCTGTGGCGTCAACCTGGGGAATTTTCAGGCGCCGCCTTCGAGGAGCATTCACCCGTCACTGACACCCCCAGCGGCTACAATCGAGGCCAACAGCGGAGCGGCGACCGACAG # Right flank : TACGTTCCCGGATAACGCGTTGAAATACATGCGTTATCCGGGGGTTTTCGTGCGCTCAACTCCGCAACTCCATTCACTAAAATAACTTAAACTGTTCATAAACCGCAGCAGGTTCATGCTTTGTCCGCGCTTCCAGGCACACCATCGTCTGATATTGCCGGTCGGTAAAGGTCAGGATTTGCACTTTTCCCCTTTTGGGAACATTCGTTCGGATGCGCCCGATTCGCGCCTCGACCTGCGGGGCGCCGGCGCAAAAGCGCAGATAGACGCTGAATTGCGACATCTCGAAACCTTCATCGAGCAGGAAGTTTCGAAATTTGGCTGCCGCTTTCTGGTCGGATTTCGTCACTGTGGGCAAATCAAACATCACCATCATCCACATCAGGCGATACGCGCTGAGTGCCATGCGCGCCCTCCTTGCGAGTGTGCGGGGAGACAAGATCTAGCGGCAGCGGCGACAGCGGCAGGTCCAGCACCTGACGCTCGCCCAACAGCAATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //