Array 1 29-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIA01000144.1 Mycobacterium tuberculosis strain Bir 273, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 29 37 100.0 36 ..................................... GCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTA 102 37 97.3 40 ................................A.... TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCG 179 37 97.3 37 ..G.................................. CTGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCT 253 37 97.3 40 ................................A.... CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTC 330 37 100.0 39 ..................................... ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGA 406 37 100.0 35 ..................................... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACG 478 37 97.3 0 T.................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 98.5 38 GGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GCGAGTACTCGGGGCTGCCGTCTGCGCTG # Right flank : TTGCGCCAACCCTTTCGGTGTGATGCGGATGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : GGTCGTCAGACCCAAAACCCCGAGAGGGGACGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [13.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 34-1243 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIA01000023.1 Mycobacterium tuberculosis strain Bir 273, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 34 36 97.2 38 ...............................G.... CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 108 36 97.2 37 ...............................G.... AGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 181 36 97.2 38 ...............................G.... TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 255 36 97.2 37 ...............................G.... ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 328 36 97.2 35 ...............................G.... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 399 36 97.2 40 ...............................G.... CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 475 36 100.0 37 .................................... CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 548 36 100.0 38 .................................... TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 622 36 100.0 35 .................................... CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 693 36 100.0 36 .................................... TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 765 36 100.0 36 .................................... CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 837 36 94.4 37 ......G........................G.... TGGACGCAGAATCGCACCGGGTGCGGGAGGGGCAGCA 910 36 100.0 40 .................................... GCGCCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 986 36 94.4 38 ..................A............G.... TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1060 36 100.0 36 .................................... TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 1132 36 100.0 40 .................................... GCGTATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 1208 36 94.4 0 ...C...........................G.... | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 98.0 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGAAAAC # Left flank : GGGGAGCCGATCAGCGACCACCGCACCCTGTCAG # Right flank : CTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGAAAAC # Alternate repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 9498-9684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIA01000085.1 Mycobacterium tuberculosis strain Bir 273, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 9498 36 97.2 38 ...............................A.... TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 9572 36 100.0 41 .................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 9649 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 99.1 40 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : TT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //