Array 1 17847-17513 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBS01000019.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00018.18_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17846 29 100.0 32 ............................. ACCGGCGCGCGGCTGGAAATCCCGCTCACGCA 17785 29 100.0 32 ............................. GACTTGGATAGGATGCCGTCCCGGCCTGTCGT 17724 29 100.0 32 ............................. GCGTCCTGCTCGAAAATATCGAGAATGTTGAA 17663 29 100.0 32 ............................. CACGCCGTGGATCTTGAGTGGATCGAGCGAAA 17602 29 100.0 32 ............................. GCGTCCGTATGGGTGTCGTCTGTGTAGAGGTC 17541 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 CTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : TCTGGAGGCTATCGTGGAGCCGTCGTAAAGCTGGGGCATGACTGCGACAGCAACCTACGATTCCGCCTCCAATACCTTCACGCTGAAGATCGGCATGTGGTGGAATGCCTATCCGATAGACGATCTCGGGAGTTGGCTGAAATTCTATCGCGACCAGCGGGTCCGGTTCCCGAAGTCGGGGACTTCCTACGACGGGACCATTGCGGCGCTGGAGAAACTGGCCAGGGAGCGTGGGCTCAGCCTCTAGGGGTGGGTCCTGCGCATGAATGCGCCGCCGGCGCCGGGCTGCAATGGCGGGATGGTCTGGAATGCGCCGCAGGATCAGGGATATGATGGCCTCATCACCGAAAAACCAGCGCCTTCCGGTGGATTTCGACGGGCTGAAGCTGGTCAGTTTCTTCCCCGACAAGCGCGGCTGAGGGCCGGGAATTTTCGCCGAAAAAATCGGTACGTTCTTTGACATTGCAAAAAATGTGGTAGATCAATGCTCTACAGGAAGA # Right flank : TCTCATGCGGGTTCCATCCCGCCCGGTGACGCCCTATGGTGGCGCCCAGAAGGAGGCCACCTGTCTCGCATGGGGTCACGGCAGCCGCTCCTCGGAACGTCCTGAGACGTATGCCGCCAGAGCGAGGGCCGATGACAGACCAACCGCAGATCCACTTTGCGACCTATCTGAGCAACCGCCTGGTGCTGATCGACTATGCCTTCCGGCTGCTGGGATCGCGGGAGGCCGCCGAGGACGTGGTGCAAGAGGCCTATATCCGCTTTGCATCGGGGCCGGAGCACATGCGTCACCCGCGGGCCTATCTGTTCCGGGTTGTGCGCAATCTGGCGCTGAACCTGCGCCGGCGCGATCATTACGAACGTCGTCAGTTGCAGCAGGAGGTGCCAGACTGGGGCCTGCCCGCCGCGTTGCCGGCGCCAGAGGAAACGGTTCGATTCGGCGAGGGGGTGCAGCGGGTCATGCGGGGTCTGTCCCGACTGTCGGAGGATCAGCGCGTGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63356-64055 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386894.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00020.20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63356 29 100.0 32 ............................. AAAGTCAGCACCAGCTACGGCGAGGTGGATGC 63417 29 100.0 32 ............................. GAGACCTGCCATGACTGACATCGTGAAGCAGC 63478 29 100.0 32 ............................. AAAGTCAGCACCAGCTACGGCGAGGTGGATGC 63539 29 100.0 32 ............................. GAGACCTGCCATGACTGACATCGTGAAGCAGC 63600 29 100.0 32 ............................. AAGGCCGGGCCGGGTCGGCACGGCGACGGGAA 63661 29 100.0 32 ............................. GGTCAATCTCTGCCATATCGGCCTCCGGGGGA 63722 29 100.0 32 ............................. ACCATCAACGAAATGACCGCCGCGCTGAATGA 63783 29 100.0 32 ............................. CCTGACACGGCTTCGGCCTTGGCCTGTTCCGC 63844 29 100.0 32 ............................. CGCCACGCTGATCGGGGCAGCCAACACGCTGA 63905 29 100.0 32 ............................. CCTGACACGGCTTCGGCCTTGGCCTGTTCCGC 63966 29 100.0 32 ............................. CGCCACGCTGATCGGGGCAGCCAACACGCTGA 64027 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 CTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : TGGGGCAGATCATCCCGGCCATCGAAGAGGTGCTCTCGGCGGGCGAGCTGCCGCGCCCCGAGCCACCTGCCGACAGCGTGGCCCCGGCTTTCCCGGATGCACCGCCCTCGGGCGATGCGGGGCATCGCTAGATGCTGGTGGTGGTGGTGGCCAATGCGCCCCCGCGACTGCGCGGGCGCCTCGCCGCCTGGCTGGTCGAGCTGCGGGCCGGGGTCTATGTCGGTGATTATTCCGCCCGCACGCGCCAGATGATCTGGGATCAGGTGCTGGCCGGGATCGACCGGGGCGATGCGGTGATGGTCTGGAAGGCGCCGACGGACCAGGGATATGATTTTCTCACCACCGGAAAAAATCGGCGCCTTCCGGTGGATTTCGACGGGCTGAAGCTGGTCAGTTTCTTTCCCGACAAGCGCGGCTGAGGGCCGGGAATTTTCGCCGAAAAAATCGGTACGTTCTTTGACATTGCAAAAAATGTGGTAGATCAATGCTCTACAGGAAGA # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTCCCCGCACGCGCGGGGATGAACCGGAGACCTGCCATGACTGACATCGTGAAGCAGCCTGTTCCCCGCACGCGCGGGGATGAACCGAAGGCCGGGCCGGGTCGGCACGGCGACGGGAACTGTTCCCCGCACGCGCGGGGATGAACCGGGTCAATCTCTGCCATATCGGCCTCCGGGGGACTGTTCCCCGCACGCGCGGGGATGAACCGNNNNNNNNNNCTGTTCCCCGCACGCGCGGGGATGAACCGGCTTGGTCATAGATCCAGCTCGCGCCGTCCCACTGTAAGCGTTGCATCTGACCCCCTGATTGCCCTCTAAACCTGACCACCTCTCGTCCGCTAGTCTGCATCCGAACTACGATCGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //