Array 1 1896871-1897791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1896871 37 100.0 35 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAG 1896943 37 100.0 38 ..................................... CGGACATTGACAGAATCATATCAAAGGGCAATTTTGGG 1897018 37 100.0 35 ..................................... ATCGCGTTCAGGTGCGAAGTTCCCATATCCTCCTT 1897090 37 100.0 34 ..................................... ATGTATAGAGTTCATATTTTTGTACCATTATTTT 1897161 37 100.0 35 ..................................... TGGATTCCTCCGAACGAATCAGTAGCTACAGGCAG 1897233 37 100.0 36 ..................................... AAATTTTGATTCCTGGACGTTCTGAGCAGAAAATAG 1897306 37 100.0 35 ..................................... CAGCTACTCCTGTAAAATCGTACACCGTTGTAGAA 1897378 37 100.0 46 ..................................... TTGNNNNNNNNNNCGTCTGGTAATACGGCATCCTGAGTGAAATAGA 1897461 37 94.6 41 ...................................NN NNNNNNNNCTAGCTTATGCGGTCTTTCTCTCCATTCTTCAA 1897539 37 100.0 36 ..................................... TAAAATGAATGCTGCTGCAGATATGAGACAAAATGA 1897612 37 100.0 35 ..................................... TGATCCAACCAATCACGCCCAACCGTTTTGTTGGT 1897684 37 100.0 34 ..................................... CGATTACTCCAGGGTCACGGTGGAACCCGTCAGA 1897755 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 13 37 99.6 37 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCTCTGCAGGGGCAGACTGGGTGATTGTAGGAAGAAGCATTTACAAGGCGGAATCTCCAAAAGAGGCTGCCTGCGAGATTGCTGAAGAAATTCAGGCTGAGCTCCGCGGAAAGTAATAAAGAATATTTTTGCTGAATGAATATTTTTTGGATTGATTGATTGATTCCATAGAAATTTTAAACCTAAAATACGTGCCTGTGATGAAAAATCTGGCTGATTCCATGATGAGCCCTATGAGTTCTGAGGCACGAAAATTATCCGAATTTTAAATTTATTTCAAATTTAAAACTATTCCGAAGAAGGTTTATGCTACTTTTTCCTTGATCAGAACCTATCCAGTAAGTAGACAATTGCCTCTGTAAAAATCGCAATAAACTTTATTCCGTGTCTTTTTGACACGGAATATTAATATTCAAATTTTTTCACTTTATTTTATTTCTTTGGTGGCCAGTTCTTCTNNNNNNNNNNTCCAGGAGCGAGAGGACCGGAAAGAAGGCGAA # Right flank : CNNNNNNNNNNCATACGGTTAATTTCAGAACCAGAGGCTTCAACAGTTTGTGTATCAATCCGGATAGAAAATGAACAAACGTCGCCAAGGACTTTTGAATATCCGATCCCTCCGATCCCCCTATTACTTCTTTCTGAACTTCCATCCACCGTACAGGCCGGCCAAGCTTCCCAATGACCTGAAGCTTAGAATATTATCCTTGAATATAATCGAGGCCTACAATCAAAACTTTCTCATTTTTTTCAAGCTCATTTTTTATCCTTATTGCATCCTTTTCCAGAACACAATTCTTTCCCACAACCCGGTCTGGTGATCCATTTCCAAAATGGATATAACACACGACTGCCTTTTTCAACTGAAGGTTATTTTTTTCCAGTACTGTAAGAAAATTTTCATCTGGAACAAATTCTGCAGATAACATAATTATGTTATAATTTCCTTTTTTGAGTTCAACTACAGAAGTCCAGTTTTCATCTTTCCTCAATTCATTGATTTTATCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 2102740-2101982 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2102739 37 97.3 34 .....A............................... TTGATGGAATCCTGTAGTTTTGGACTCCGTGCGG 2102668 37 97.3 34 .....A............................... AGGCCAGGGATGAAAAGGGAATTCTCGCCTACCG 2102597 37 97.3 35 .....A............................... TTTTCGTCTATGTTGCCATGTGCATTACTAGTTTC 2102525 37 100.0 35 ..................................... CAGGTAACTCCTGTTTCTGAAGCATCCGGACCGAT 2102453 37 100.0 36 ..................................... ATCTCTTTGCGTTGTCTTCTAATTGTATCAGTATCT 2102380 37 100.0 36 ..................................... TTTCCTAATTTGAATTTTAGAAATGGATTTGTATTT 2102307 37 100.0 35 ..................................... CACTATACAGAAACTTGCAGAAATTACACGATACA 2102235 37 100.0 35 ..................................... GCAAATTGATAGCAACAGCTAAAATCTATAAAGAT 2102163 37 100.0 37 ..................................... GCCAATAGTTCTCTTAGGTGATAGCCCTTACATACGT 2102089 37 100.0 34 ..................................... TATAAATCGCATCACATCAAGATCACTGCAAGGA 2102018 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 99.3 35 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GAGAGCAAGATCCACTAAAACAAGGATTGAAACCTGCCCTATCATCCTGCACAGCATTTGATACAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGAGAGCAAGATCCACTAAAACAAGGATTGAAACCAATTATCTTCTTTCCTATCCTCATTACGTCAACTT # Right flank : CTCATCTTTGAGTAAAATTTTTATTTAATTATTATTTTTTAGCTATTTTTATATTTATTTGATTTTAAACTATTGTAGTCAGCATTAAAATAAATTTTCATAATATTGACTAAATTTAGAAACTTTTATATGTAATCGAATATTTTTTAAGAGATAAATTATTTTAAAGGAGCATTTCCGATAATGAATGATGATGAACTTCAACTCATATTCTTGCTCCATGATCTTGGCATATTTTTTAAGAGAACAGGCTTGCCCCCCTTAGAAAAATTCAGTAAATTGACGGAAAATGAGATAGGTAATGGAGGGTCACACTCAATATGGAGTGCTTCATTTGCTGAAGAGCTTGGTCTGAGCCAGGATATCCAGAATATAATACTATACCACCATAATTACGATTCTTTGGAAGGAGAGAATGCAAGAATCGCAAGTGTACTTGGTCAAGCTGCTGAATTCTTCTCAGGAGAAGAAGAGTTGGGGCCGGTAAACCTTCTATCTGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 3 2103895-2103207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2103894 37 100.0 35 ..................................... TCTGCTGTTTGCCCTCAGTGAGTTTCAGGAGATCT 2103822 37 100.0 36 ..................................... ATCTTACGGGTTCTGTCATACAGGAACCTCCAATAT 2103749 37 100.0 35 ..................................... ATAAAAGTAATCTCACTATATCAGGCACAAGAGGC 2103677 37 100.0 33 ..................................... CTTCGTCGCCTGCTGAAAATGTATTTTCGTCGA 2103607 37 100.0 36 ..................................... CCTCTCCTTATACTCCGGCAGCTTCTCCTGATATGG 2103534 37 100.0 37 ..................................... CAAACCCGGGCAAGCCGGTTACAGGCATTTCAAGAAT 2103460 37 100.0 37 ..................................... TCCCGAGCTTGAAAAAGCTTATCTGGCCTAATAAGGT 2103386 37 100.0 34 ..................................... ATGCACAGCCAATCGATTCGAGGTCTGTAATACT 2103315 37 100.0 35 ..................................... TAAAATGAATGCTGCTGCAGACATGAGACAAAATG 2103243 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 35 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTGCCCTATCATCCTGCACAGCATTTGATACAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGAGAGCAAGATCCACTAAAACAAGGATTGAAACCAATTATCTTCTTTCCTATCCTCATTACGTCAACTTATTCGAGAGCAAGATCCACTAAAACAAGGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 4 2225942-2227353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2225942 37 100.0 36 ..................................... TTATACAGTGCTTCAATAGGTCCGGTCATTTTCTTA 2226015 37 100.0 37 ..................................... TAAAAAGAGTAAATGCGTTTTTTGCAGCTAGAGAACT 2226089 37 100.0 35 ..................................... ACATACTCAAGTGCTTCAGGTGCAACGACAATAAG 2226161 37 100.0 34 ..................................... AATATAATCAACATGGATACACATACATGAAAAA 2226232 37 100.0 37 ..................................... CAATATCTTAAGGCTAAGTCCTTCAGAGCTGCACCTT 2226306 37 100.0 35 ..................................... AGGCTATGCGTTTCTTAACTCGATTGTTCTATAGA 2226378 37 100.0 35 ..................................... TGAACCGAGGGAAGATGATTGAATATATCTTACTT 2226450 37 100.0 37 ..................................... ACATTCTTATAATTACCTTCGTTCTCCCAAAAAACAT 2226524 37 100.0 35 ..................................... TTTTTATATCAAGTTCGTTCATTGTGTTTTCACCT 2226596 37 100.0 34 ..................................... TTGATTCCGTCATTCTGATCTGTAGATGACCAAA 2226667 37 100.0 37 ..................................... TATCGTATCCTAATTTTCATTAGGATATTCATGCTTC 2226741 37 100.0 36 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAAA 2226814 37 100.0 32 ..................................... TGGCATATGATTGATTAGATGTAATGAAGTGT 2226883 37 100.0 35 ..................................... TCTAATGTCAACTCTATGTATAAGTATGTACTATT 2226955 37 100.0 34 ..................................... AGGGTTTCATGCTGTTTTCCGTTCATTCATACAC 2227026 37 100.0 35 ..................................... TACGGACTGGAATTAAACACGGCTTCAAAGGCGAT 2227098 37 100.0 36 ..................................... ATAGCGATTGTATGAACTCCGTGAACATCCTTCGGT 2227171 37 100.0 37 ..................................... GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTAT 2227245 37 97.3 35 .....C............................... ATCTCCCTCTCTTTTTCATCTAGAGAATTCCGCAA 2227317 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 99.9 35 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCGTTGAAAAATGAAATCCAGATTAAGCCGTTAAGGGTATGGTCGGAGGATAGCATTTATGGAGCTGTTATCCTTGGATTTATAGCTCAATTATTCATATCGCTGATGCGATATGAATTTGAAGAGCTAAAACACACCTCTACAAAATTCATTAAAAAAAGCTTGAAGAATTTGACACTTACAATCAAGTTCAGGATAAATGGCGTCAAAAACTATATTTTTGCGAATTTTGACAGGATCAATAGCTTAATAGTAGCAAAAAGGAATGGAATTACATAGAATATGTAAGAAATTTTTATAAAATTGAACGAATTGTCAAGTCAAATTGGGACAAAAAAGAAGGGAAAAATAAAGTATCAATTAGTGGTAACTGTCAAACTAAGGTTTTAATATATCATCTTCATAGTTCAGGAAGAATTAAGTGCCTATCCGAAAAGTCCCGCTGCTCTAAATGTTATNNNNNNNNNNTTTACATCTATCATTTTCAATGAAAACGCAAG # Right flank : CACGACAGAATCAGGACACAAAATAAGCAAGGATTATTCGAGAGCAAGATCCACTAAAACAAGGATTGAANNNNNNNNNNCAAAACTAAGATATGTATCAAGACATCATTTGTTTCAATCCTTGTTTTAGTGGATCTTGCTCTCGAANNNNNNNNNNCTAGACTAGATTCTTATACGTTCATACATTTTAAGCCTTTAGATCAACCATATATTTAGTGTTAGACTACAGTTACATCACCACAAAATTCAGCACAAAAGGCTTATTTTATACTTTTATCACATTCTATAATATTACAGCGGAGGATTTAAGGCTGCCGTACGCGGTGTGAATATATTGTATTTACATGTCATGTATTATATTTTAATACAAATAAATAAACTTTTAATACAATTTAAGAATATAGATATTTTTTGTGCAAATTACTTAGAATCTAAAACAAAATCGTCATCTATCAAATGATGTCTGTTATTAGTGTTTTTGATGATGCCTATGGGTTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 3718369-3716818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 3718368 37 100.0 36 ..................................... ACAGAATCAACAAATATAACCTTGAACAAAGGGCAA 3718295 37 100.0 34 ..................................... TTTGAGATTATATACGTGTATGGCCCNNNNNNNN 3718224 37 94.6 44 NN................................... TTTTATAGTATGCCATGTTAGATCAAACTCCTATTNNNNNNNNN 3718143 37 97.3 40 N.................................... CTGGGATAATTCACCGGGGGAACTATGGCANNNNNNNNNN 3718066 37 100.0 35 ..................................... AAACTAATAATTCAAGAAAATTAAAGATATATGCA 3717994 37 100.0 44 ..................................... ACCGATATGGAAAACACACAGTAATATAAAANNNNNNNNNNAGT 3717913 37 100.0 37 ..................................... GCATGGACTATACGGCATCCATCGCCCATACTGTCTT 3717839 37 100.0 42 ..................................... CAGTCCTGCAGTGTATTTGTTCGGGAATGTGGNNNNNNNNNN 3717760 37 100.0 37 ..................................... GGTTAACGTATACCAAAAACATTAACTAGAGAACAAT 3717686 37 100.0 37 ..................................... AAAACGTTAAGCAGGGAGCTAATGACCTTTTCCAAGA 3717612 37 100.0 37 ..................................... CTAGATTCCAACATTCTAACACTTAGAAGCTGTTCTT 3717538 37 100.0 34 ..................................... CTCATTGTATAACTTCCTTAATTTTCTTATAGAA 3717467 37 100.0 43 ..................................... AGTCATCTACCCTGATTGATTGATGGGGGCTTGNNNNNNNNNN 3717387 37 100.0 40 ..................................... TATATAGTATTAGGTTGTATAGTATATTGTNNNNNNNNNN 3717310 37 100.0 36 ..................................... AAGAGGAATCACTATGATAGATCACGAAACACCCGA 3717237 37 100.0 35 ..................................... TGCACATGTTTTCAAAGACACCATGAATCCATTGA 3717165 37 100.0 45 ..................................... AGTGGATAGTGTCATATTGAAAACCGTCACCGNNNNNNNNNNGGG 3717083 37 100.0 43 ..................................... ATGTGAGTATAGCGGTTCCTGCTTCTGTTACAGTNNNNNNNNN 3717003 37 97.3 39 N.................................... TCTAGGATCACTGGATATCTTCAGTCTGTTGANNNNNNN 3716927 37 91.9 36 NNN.................................. AAATAAAGCGTGAATGGATGAATGAGCTTATAGCTA 3716854 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 21 37 99.1 39 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : TCCTTCTTGCAGTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACACATCTCTTCCATAGTGGCGATACTGCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTTTAGATTTGTAATTTGGAAATCCTTTATTTTCNNNNNNNNNNTTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACATCAGTTCCCGGTTCATCTCAGAATTCAGTANNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACGGTCACTTCGTACGACCGCTGCGAAGCCGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGTTTGACTTTGATTGTATTTCCTGTATACCACTCTGTCCAGAAATCTTCATTATTATAGTCTTTAAAAGTTACAAGCTTGTTTCCATCCTTATTTAAAAGGATTAACTTGTCATCAAAATCAAGCTCTAATTTCGTAAAATGAAGACGCATCTGAGTTGCTTCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 6 3718787-3718488 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ================================================= ================== 3718786 46 100.0 49 .............................................. ACATCTCTTCCATAGTGGCGATACTGCCAGGNNNNNNNNNNNNNNNNNN 3718691 46 95.7 34 .........NN................................... TTTTAGATTTGTAATTTGGAAATCCTTTATTTTC 3718611 46 97.8 32 .........N.................................... ATCAGTTCCCGGTTCATCTCAGAATTCAGTAN 3718533 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ================================================= ================== 4 46 98.4 39 NNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : ACAAGGATTGAAACAATTGTTTCTCAGCGCATTTCCAGCGCTTTTCTGNNNNNNNNNNATATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACACGGGACTAGCTGCAAGTTCAGGATCATAATTAAAACCNNNNNNNNNNTTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTCGAATCCTTCTTCTCTTTCATTTCAACTANNNNNNNNNNGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTCGCCCCTTCATCGAGGATGCAGGTTATTGTCTGCATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACGTATGTAAGTTGAAGCAACCGCACATAGACAATTTTATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTCAGCTTGGGCTTTCCTTCTTGCAGTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTCACTTCGTACGACCGCTGCGAAGCCGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACACAGAATCAACAAATATAACCTTGAACAAAGGGCAAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTTGAGATTATATACGTGTATGGCCCNNNNNNNNNNTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTTTATAGTATGCCATGTTAGATCAAACTCCTATTNNNNNNNNNNTTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACCTGGGATAATTCACCGGGGGAACTATGGCANNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACAAACTAATAATTCAAGAAAATTAAAGATATATGCAATTCGCG # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,16] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : NA // Array 7 3719382-3718883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 3719381 37 100.0 35 ..................................... CAGAGGAATGGACCGAGGGTCTAACTGATATTAAT 3719309 37 100.0 46 ..................................... AATTGTTTCTCAGCGCATTTCCAGCGCTTTTCTGNNNNNNNNNNAT 3719226 37 100.0 47 ..................................... ACGGGACTAGCTGCAAGTTCAGGATCATAATTAAAACCNNNNNNNNN 3719142 37 97.3 41 N.................................... TCGAATCCTTCTTCTCTTTCATTTCAACTANNNNNNNNNNG 3719064 37 100.0 35 ..................................... TCGCCCCTTCATCGAGGATGCAGGTTATTGTCTGC 3718992 37 100.0 36 ..................................... GTATGTAAGTTGAAGCAACCGCACATAGACAATTTT 3718919 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 7 37 99.6 40 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GATCTTGCTCGCGAATAAAGTACCGTCGTACTCTTCATAGTTACCAGACGGGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCAACTCCTGCTATGTGTTTCATCTGACCACANNNNNNNNNNTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGGTAATGTAATGGTTTCAATACCCAAATTTTATTAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCTTCATGCAGAGAAGGGAATTAAGCCAATNNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGCATGTGGGCTTCAATGACGCCTATTATTGCTCAGAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTGTGTTTCCGGAATTAACCGGTGAGTCCGAAGAATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTGATGATTATACTTTCATCGGGACAGTTTTNNNNNNNNNN # Right flank : TTCAGCTTGGGCTTTCCTTCTTGCAGTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACACATCTCTTCCATAGTGGCGATACTGCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTTTAGATTTGTAATTTGGAAATCCTTTATTTTCNNNNNNNNNNTTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACATCAGTTCCCGGTTCATCTCAGAATTCAGTANNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACGGTCACTTCGTACGACCGCTGCGAAGCCGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 8 3719423-3720728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3719423 36 100.0 36 .................................... CATTCTTCGGACTCACCGGTTAATTCCGGAAACACA 3719495 36 100.0 37 .................................... CTCTGAGCAATAATAGGCGTCATTGAAGCCCACATGC 3719568 36 100.0 40 .................................... CNNNNNNNNNNATTGGCTTAATTCCCTTCTCTGCATGAAG 3719644 36 100.0 36 .................................... CTAATAAAATTTGGGTATTGAAACCATTACATTACC 3719716 36 100.0 41 .................................... NNNNNNNNNNTGTGGTCAGATGAAACACATAGCAGGAGTTG 3719793 36 100.0 37 .................................... CCCCGTCTGGTAACTATGAAGAGTACGACGGTACTTT 3719866 36 97.2 41 ...................................N NNNNNNNNNGAGATGCTACAGCAGAAATTAAACTCGATGAT 3719943 36 100.0 39 .................................... CNNNNNNNNNNCAGAAATATGTTTCATCATAACAGGTGG 3720018 36 100.0 40 .................................... CTNNNNNNNNNNGTAGTAACTCCGAGAATAACGTTTTTCA 3720094 36 100.0 36 .................................... CATTCACGCCATCAAGGGGATTGCATTAGGCTTGTA 3720166 36 100.0 44 .................................... CTNNNNNNNNNNTACGTTTTTGCTGTATCGGTCATTTTCGGGAA 3720246 36 100.0 40 .................................... CNNNNNNNNNNTTGGATGTTCTGAAAACTCGCCTTGAAGG 3720322 36 100.0 44 .................................... CNNNNNNNNNNTCGGAGCGGTCAGAGGATTTGCGTATTTCCTTG 3720402 36 100.0 36 .................................... CTTTGGTGTCATGTTGAAATCCCGATCACCGGAGAA 3720474 36 100.0 36 .................................... CTCATACCGACAACGAACAACTTGTTTCCTGCAGAA 3720546 36 100.0 35 .................................... CCCATCGTAGCTCATGACGTGAAGACAGCTTTCAC 3720617 36 97.2 40 ...................................N NNNNNNNNNGAGTTCGACTCGTTGGATTCATTCCGGAAAG 3720693 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 18 36 99.7 39 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAA # Left flank : ATTGTCTATGTGCGGTTGCTTCAACTTACATACGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGCAGACAATAACCTGCATCCTCGATGAAGGGGCGAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCNNNNNNNNNNTAGTTGAAATGAAAGAGAAGAAGGATTCGAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAANNNNNNNNNNGGTTTTAATTATGATCCTGAACTTGCAGCTAGTCCCGTGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATATNNNNNNNNNNCAGAAAAGCGCTGGAAATGCGCTGAGAAACAATTGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATATTAATATCAGTTAGACCCTCGGTCCATTCCTCTGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATNNNNNNNNNNAAAACTGTCCCGATGAAAGTATAATCATCAA # Right flank : ANNNNNNNNNNGTAAGGGCTAAATATCTGTTAATGGTTATTCAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTCGGTGATTATGTCCTTGACTATCGTGCTTTTTGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATNNNNNNNNNNCACTCTATTGAATTCTTCAGGGTTTTCCCACATTTTATTCGCGAGCAAGATCCATTAAAACAAGGATTGAANNNNNNNNNNTCAGTTGAGTCGGCTGTCGCAAATGCTTCAGCATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACCTTTTGAGTTCTCAATCCATCCCTTTATATCCGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACNNNNNNNNNNAAATCTGTCGGTGTTTTTAAAAAGAGTAAAGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTCAAACTTTGTTAAGAGAGGGCTTACCAGTTCAAAATTCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 9 3723262-3722079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 3723261 35 100.0 43 ................................... TGACAGATTTTACGAAACGTAGTTCACTTTCGNNNNNNNNNNT 3723183 35 100.0 38 ................................... ATAGGAGATTGAAAAAGGGTATTGAATGCTTGTCAAAT 3723110 35 100.0 41 ................................... ATGACGATAGAGAAGTAATGCTTACTATTCCTGNNNNNNNN 3723034 35 94.3 44 NN................................. TAAAAAATGAGGTTGCAATGAATCCGGTTTGCNNNNNNNNNNAT 3722955 35 100.0 43 ................................... CGGATACCTGCAACCTGATTATATCGTCAAANNNNNNNNNNAT 3722877 35 100.0 47 ................................... CATCACAGTAGAACAAAAACGAGAGCTTAAGACGNNNNNNNNNNAAT 3722795 35 100.0 37 ................................... CCGAAGCCCGAATGCATTGATAAGATAGATATCGCAT 3722723 35 100.0 44 ................................... CGCACAGTCGAGCGGGGCTGTGTGGCTTACGTTGCNNNNNNNNN 3722644 35 97.1 40 N.................................. ATCATAATTTGAATAAATGGTTTTAAATCTGTCGAATTAT 3722569 35 100.0 42 ................................... ATAAAGTTCGGGCGAAATTAGTTATAAATTATACNNNNNNNN 3722492 35 94.3 38 NN................................. AAATAAGGTCGTCTGTGTCATGTAAAGTGGTTTTGTAT 3722419 35 100.0 44 ................................... ATAATTAATATGGGATCTTAATATATAACCAANNNNNNNNNNAT 3722340 35 100.0 43 ................................... CATTTTACAACATTTACCAAGCCTGATTATGAGNNNNNNNNNN 3722262 35 100.0 36 ................................... CGGTTAGAAGCATGTTATACACCTTTGCTATAGAAT 3722191 35 100.0 43 ................................... TTTTCTTGTACAAACCGATGAAGTTCGTTTTGNNNNNNNNNNT 3722113 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================================== ================== 16 35 99.1 42 TCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : TCTCCTTTCATCAACTGCAAAGACATANNNNNNNNNNTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACCTGTTACCTTATCCTGGGTAACAGTTGGGTNNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGATTCGTACTCGGATGGCTTGCAGATTGCTTATTGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATATGTTTTGAAGATTTTGGGAATGATCGAGAAAAAAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGCAACTTGCCCTTGTAGACCAAAACGGGAAAGTCGNNNNNNNNNNTGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATATATTGCATCTTCTTATGAAGACGCCACGTTAACTCNNNNNNNNNNTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTGAGAAGAGAGAAAATAGTAAACGGGCTGNNNNNNNNNNGGAT # Right flank : CTATTCTTACCATCGTTTAAGCCTCCTGTANNNNNNNNNNAGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATACGTGGCCTTACACGGTCAGACCTGGACACGTNNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTATAACAATCATCTGCCGAAAACTGCATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTTGTCGTAGGTCAAAGGCAAACCAAAANNNNNNNNNNTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTTTTAGACGGCAGCCCGGACAAGTCGAAAACTACGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTGTGAGAGAGGTATCAATTTTTTTGATTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 10 3723386-3723649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 3723386 37 100.0 46 ..................................... ANNNNNNNNNNCGACTTTCCCGTTTTGGTCTACAAGGGCAAGTTGC 3723469 37 100.0 35 ..................................... TTTTTTCTCGATCATTCCCAAAATCTTCAAAACAT 3723541 37 100.0 35 ..................................... CAATAAGCAATCTGCAAGCCATCCGAGTACGAATC 3723613 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 4 37 100.0 39 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : NNNNTTTGACGATATAATCAGGTTGCAGGTATCCGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATNNNNNNNNNNGCAAACCGGATTCATTGCAACCTCATTTTTTAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCNNNNNNNNNNCAGGAATAGTAAGCATTACTTCTCTATCGTCATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTGACAAGCATTCAATACCCTTTTTCAATCTCCTATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAANNNNNNNNNNCGAAAGTGAACTACGTTTCGTAAAATCTGTCAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCCNNNNNNNNNNCAGCCCGTTTACTATTTTCTCTCTTCTCAAATTCGCGAGCAAGATCCATTAAAACAAGGATTGANNNNNNNNNNGAGTTAACGTGGCGTCTTCATAAGAAGATGCAATAT # Right flank : CNNNNNNNNNNACCCAACTGTTACCCAGGATAAGGTAACAGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGANNNNNNNNNNTATGTCTTTGCAGTTGATGAAAGGAGAGGGAAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGNNNNNNNNNNAAGTCGATATATATTCAGACTCTACGATTATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGANNNNNNNNNNGAATGTGTAATATGTGCAGCAAACGACTATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAANNNNNNNNNNCCAGAATTGAGGTACACTCTTTTATATTTCCAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTCATAATATATATAGTTATGCATAGAAAATATGATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 11 3723961-3723690 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================ ================================= ================== 3723960 44 97.7 31 ........T................................... ATAGTCGTTTGCTGCACATATTACACATTCN 3723885 44 100.0 31 ............................................ ATAATCGTAGAGTCTGAATATATATCGACTT 3723810 44 97.7 33 .........N.................................. TTCCCTCTCCTTTCATCAACTGCAAAGACATAN 3723733 44 100.0 0 ............................................ | ========== ====== ====== ====== ============================================ ================================= ================== 4 44 98.8 32 NNNNNNNNNTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGAGCAAGATCCATTAAAACAAGGATTGAAACATCATATTTTCTATGCATAACTATATATATTATGAAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTGGAAATATAAAAGAGTGTACCTCAATTCTGGNN # Right flank : CTGTTACCTTATCCTGGGTAACAGTTGGGTNNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGATTCGTACTCGGATGGCTTGCAGATTGCTTATTGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATATGTTTTGAAGATTTTGGGAATGATCGAGAAAAAAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGCAACTTGCCCTTGTAGACCAAAACGGGAAAGTCGNNNNNNNNNNTGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATATATTGCATCTTCTTATGAAGACGCCACGTTAACTCNNNNNNNNNNTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTGAGAAGAGAGAAAATAGTAAACGGGCTGNNNNNNNNNNGGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTGACAGATTTTACGAAACGTAGTTCACTTTCGNNNNN # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NNNNNNNNNTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : NA // Array 12 3724932-3725801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 3724932 36 97.2 45 ...................................N NNNNNNNNNTGTGTGTGCCTGGTTGAGTTGCCGCATCTTTTGAGT 3725013 36 100.0 38 .................................... CNNNNNNNNNNTAAACCAGAGTCATCTATTGTTAACAT 3725087 36 100.0 38 .................................... CAAAAATTTAGTTTTGACAGCAAGCCGGGATTCTGATT 3725161 36 100.0 45 .................................... NNNNNNNNNNCTCATTTGTGCCATCTGTCATGTATAATTCACATG 3725242 36 100.0 40 .................................... CNNNNNNNNNNTTGTTCGGTTTCCGAGTCGGATAGCTGCA 3725318 36 100.0 41 .................................... NNNNNNNNNNTTGTGATAGTGTGTGCGCTTAATTCATTATT 3725395 36 100.0 41 .................................... CTCAGTCTGCTTGCCCGGAAGATTCGGCTGAATTCCTCAGT 3725472 36 100.0 44 .................................... NNNNNNNNNNCATCTGGAACCCATATATTCATTCTCGGCATTGA 3725552 36 100.0 36 .................................... CAGTGTCAGAATAGTAACCTTAAAGTACAATAAAGT 3725624 36 100.0 34 .................................... CTGCTTTGGTCCCGTACATAGCTATCTTGGCTAT 3725694 36 100.0 36 .................................... CGGAGGATCAGAAGTACAACTAATTGTTGCCGACAT 3725766 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 12 36 99.8 40 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACAAAAACAGATAATGCTGCAGCATGGGCAGGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAANNNNNNNNNNCCCACTTAAACCTTATTCCTTTTGCTGATTTT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNGAATGTCTTTTTTTTGGTCGTATACCTTTTCGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCNNNNNNNNNNCAATTTGATTACAGGTTGTGGATGGGGAAACAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTAATATTGAAAAAAGATATGAGATGAAGAAAGCCGAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAANNNNNNNNNNGCATGAAGGCGGGATATCCTCCATAGATCATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACNNNNNNNNNNGCCTATTACGAGTTCGCCCGATGTTGTAATAAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTCAAGAAACACTGTGAAAATCTGAAATACATTGATAAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAANNNNNNNNNNCATCTGACATTGTTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 13 3725938-3726200 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3725938 36 100.0 37 .................................... CTAATATTGAAAAAAGATATGAGATGAAGAAAGCCGA 3726011 36 100.0 39 .................................... NNNNNNNNNNGCATGAAGGCGGGATATCCTCCATAGATC 3726086 36 100.0 43 .................................... CNNNNNNNNNNGCCTATTACGAGTTCGCCCGATGTTGTAATAA 3726165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 100.0 40 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAA # Left flank : TGCTTGCCCGGAAGATTCGGCTGAATTCCTCAGTATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAANNNNNNNNNNCATCTGGAACCCATATATTCATTCTCGGCATTGAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACAGTGTCAGAATAGTAACCTTAAAGTACAATAAAGTATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTGCTTTGGTCCCGTACATAGCTATCTTGGCTATATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACGGAGGATCAGAAGTACAACTAATTGTTGCCGACATATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNGAATGTCTTTTTTTTGGTCGTATACCTTTTCGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCNNNNNNNNNNCAATTTGATTACAGGTTGTGGATGGGGAAACA # Right flank : ACTCAAGAAACACTGTGAAAATCTGAAATACATTGATAAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAANNNNNNNNNNCATCTGACATTGTTTGGCTCCATTGAACTTGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATNNNNNNNNNNGTTCAACCGATAACGAAAATTAACAATTTCTATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACNNNNNNNNNNCGTAAGTAACTGGTTACGCTAGTTACGCAAACCGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGANNNNNNNNNNTATCGTTACATTTACTGATAACACACATATACAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATNNNNNNNNNNGTCCACGACAGTTTCACATGCTTTTATGTAATCAAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCNNNNNNNNNNAAATTCCAGACAATAACG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 14 3726669-3726474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 3726668 35 100.0 47 ................................... TTGATTACATAAAAGCATGTGAAACTGTCGTGGACNNNNNNNNNNAT 3726586 35 100.0 43 ................................... TGTATATGTGTGTTATCAGTAAATGTAACGATANNNNNNNNNN 3726508 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================================== ================== 3 35 100.0 46 TCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : ATATAAAACTGCAGGATGTAATCTCCTTNNNNNNNNNNGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTATTCAGGAGTCGCAGGGAGAAGAGCCCGATACCATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACCTATCATGCTGACACACCCAATGCCCCACAANNNNNNNNNNAGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACACTCTTACAAAATTCGAGAAAAAACACCTGTTTNNNNNNNNNNTTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACCAATCTAACGCGACTTGTGCGGGAATTGCTGNNNNNNNNNNGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACATTAACGTAATTATTATCATTTTGTTAANNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTAATCCCATCTATCGTTATTGTCTGGAATTTNNNNNNNNNNGAT # Right flank : CGGTTTGCGTAACTAGCGTAACCAGTTACTTACGNNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATAGAAATTGTTAATTTTCGTTATCGGTTGAACNNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACAAGTTCAATGGAGCCAAACAATGTCAGATGNNNNNNNNNNTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTATCAATGTATTTCAGATTTTCACAGTGTTTCTTGAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTTATTACAACATCGGGCGAACTCGTAATAGGCNNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGATCTATGGAGGATATCCCGCCTTCATGCNNNNNNNNNNTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTCGGCTTTCTTCATCTCATATCTTTTTTCAATATTAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 15 3727062-3726788 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3727061 36 100.0 44 .................................... CTATCATGCTGACACACCCAATGCCCCACAANNNNNNNNNNAGA 3726981 36 100.0 43 .................................... ACTCTTACAAAATTCGAGAAAAAACACCTGTTTNNNNNNNNNN 3726902 36 100.0 43 .................................... CAATCTAACGCGACTTGTGCGGGAATTGCTGNNNNNNNNNNGA 3726823 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 100.0 44 TTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : ATATTGGCTGTTGTAGAAGTTTCGAAATATTAATGTCGGACATCTACACAGGTCACAACACTTTTCGAATAGGCTCTTAATGGATCATGCTCACGAATTATGACAATATAACAATAAGTGTCACAAAAAATGAAAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTCATTATCAACTCTCCAGATATCTCCGTCTTGGAAAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATAATGTTTGCGAGGTATATCTAAAATGACTACAGATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGGACAACGCTGCAATTTTTACCCGGACTTTTCGAAAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTCAATATAAAACTGCAGGATGTAATCTCCTTNNNNNNNNNNGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTATTCAGGAGTCGCAGGGAGAAGAGCCCGATACCA # Right flank : ATTAACGTAATTATTATCATTTTGTTAANNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATTAATCCCATCTATCGTTATTGTCTGGAATTTNNNNNNNNNNGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTGATTACATAAAAGCATGTGAAACTGTCGTGGACNNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTGTATATGTGTGTTATCAGTAAATGTAACGATANNNNNNNNNNTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACCGGTTTGCGTAACTAGCGTAACCAGTTACTTACGNNNNNNNNNNGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATAGAAATTGTTAATTTTCGTTATCGGTTGAACNNNNNNNNNNATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACAAGTTCAATGGAGCCAAACAATGTCAG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 16 3727172-3727500 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029709.1 Methanosarcina mazei strain JL01 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3727172 37 100.0 36 ..................................... TTTCGAAAAGTCCGGGTAAAAATTGCAGCGTTGTCC 3727245 37 100.0 35 ..................................... ATCTGTAGTCATTTTAGATATACCTCGCAAACATT 3727317 37 100.0 36 ..................................... TTTCCAAGACGGAGATATCTGGAGAGTTGATAATGA 3727390 37 100.0 37 ..................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 3727464 36 75.7 0 .....T.....T..........G.-GCCT.......A | C [3727496] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 95.1 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : NNNNNNNNNNAAATTCCAGACAATAACGATAGATGGGATTAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACNNNNNNNNNNTTAACAAAATGATAATAATTACGTTAATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCNNNNNNNNNNCAGCAATTCCCGCACAAGTCGCGTTAGATTGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAANNNNNNNNNNAAACAGGTGTTTTTTCTCGAATTTTGTAAGAGTGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATCTNNNNNNNNNNTTGTGGGGCATTGGGTGTGTCAGCATGATAGGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAATGGTATCGGGCTCTTCTCCCTGCGACTCCTGAATAAGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCNNNNNNNNNNAAGGAGATTACATCCTGCAGTTTTATATTGA # Right flank : AGTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAG # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //