Array 1 1151676-1150777 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS991421.1 Lacticaseibacillus zeae isolate CECT 9104 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1151675 32 100.0 37 ................................ GCCGTTATGTTCCGGGGCTTTGAGTTAGCACTTTCCG 1151606 32 100.0 36 ................................ TTCCAAGTGATCGGCAATGTACGGCGTGGCATCCTC 1151538 32 100.0 33 ................................ CATTCATCTTTGAGCTGTGGCAAATACATTGGT 1151473 32 100.0 34 ................................ ACGTGCTGAATCATACCAGTTTAAGGGCAGATGA 1151407 32 100.0 35 ................................ CAGATGACATCAATAACAAGCTTCAGTATCTTGGG 1151340 32 100.0 34 ................................ AGGCAAACAACCGCGGTTGTGGATGATTGATGTC 1151274 32 100.0 34 ................................ AGAAGAAATAGAGGTGATTTGAATGACACTTATC 1151208 32 100.0 33 ................................ ACCGTGGAATTGCAGCGCTTTTATAAGCAATGG 1151143 32 100.0 37 ................................ CTCTGGATACGCCGCCGCAATCACTTTGACTAGTCTC 1151074 32 100.0 36 ................................ GTACTTAGCCAGCCAAACCTCGGGATCTAACCAGGG 1151006 32 100.0 33 ................................ GCCTCCATGTATTGTTTGATCTTATCGACTCGC 1150941 32 96.9 34 ............A................... ATAAACTCGTCTAACCACTTCCAAACGGCTAACT 1150875 32 100.0 35 ................................ CGCAACTAAAGGCACATCTGCGGATGGGCAAGGAG 1150808 32 96.9 0 .....................C.......... | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 99.6 35 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : TGGAGTTGAGTGCCTTCATATGTAAGTACATTGTCTTTCCAGGCTTGTTCAATATGAATAAGTGCCCATTGACGTTTGCAAAAAACGAAATGCTGAATACCGGATATTAAAAGCCAATCCTCTTCTGAATAATACAATTGAGTCACCTCCAAAGCAGCTATTAAATTCACCTATCGTCTTTGATTACCAGCATAAGAAGTCAAAAATATAGCGCTTACAAGTTTGTGGCCAAAAGCTTTTTCAAAATTTAGTTGATCATATCAGGCAGGCATTGAAGATACGTTAACGTACTATGGTATATTGTTATTGAAGAACAACATGTTTTCGACAATGAAGGTCTGAGTGCGAATGTAGGGCACACATGAAATCGCCGGTACATTCGCACTCCTGTTGTTAACTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTGTTATGTGTTAGGAAACACATTATGTTGCG # Right flank : AGGATTGATTATAGCGGCAATTAAGTCGCAATCCTCATAATTACATGAGCTAAAATACGCCCTTTGAAGAAGCATATGGGGGTTAAATCATTCCAATTAAATGGGATGCGCAAAGCAAAATTATTGCTTGAAGCCTGCACTTTCTCCGCAAAAAAACCAGCATGAAACCCGACTGGAAGTCTGGCACATGCTGGCTTATTTGCTTGGAATGTCTGCTGAATTTACCTACAAATCCTTTCGCCATAAAGCTAAAACCGACAAGATAATAGCAGTCATCAAAGTTGTCTACAGCTCATATCGTTAATAGTTCATACAGTTAATTTCTTTAGATATCTTGCGATTTTTAATATAGTGTTAGTCTTTTTTCACCCATCCGTGACACTATGCGGCTTGCCCTCAACCCTGAGTACCTCTTCAACACTAGGCCGCTCACGCATTGATTCGTCAAACGCCCGTAGCTTTTGCAACCCATCAAACGAAAAGCCAAGCCGTCGCATCCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1160577-1162275 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS991421.1 Lacticaseibacillus zeae isolate CECT 9104 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1160577 32 100.0 34 ................................ GTATGAGAATATACCGACGCATTTGAATTGGTAC 1160643 32 100.0 34 ................................ CCATCGTATCATATGACCTAGCAAAAGGTAAAGC 1160709 32 100.0 35 ................................ AAAAAGCCGCGAATGGTAGTTTGCTTTCTTATCAA 1160776 32 100.0 35 ................................ CTTTCTTAAAGTGATCCCAAATTGCCACCGCGCCG 1160843 32 100.0 36 ................................ TTCGGGACTGAAATCCGATTGATCCTGCCGAATCTT 1160911 32 100.0 34 ................................ CAAAAAGTCGGATCACGAAATTCCGCACCAAAGG 1160977 32 100.0 34 ................................ CAGACACCAAAGATAGGTGTTATCGTTGGGATAA 1161043 32 100.0 37 ................................ CTTTTAGAGCCTAGCAAGGGTAAAGGCGGCCACCAAC 1161112 32 100.0 34 ................................ AATTCGGAACGGATAAGCGGTGAAGGATATTGTC 1161178 32 100.0 35 ................................ CCTTAACGCTTGACGCCGGTGGCGCAGGTACCGCC 1161245 32 100.0 34 ................................ AAAATGAAATGGACAAAGCCAATCCGTCCATTTT 1161311 32 100.0 36 ................................ ATCGCCGGTGATGATGGTCAGCTTGCGAACGGTGTC 1161379 32 100.0 33 ................................ ACGTATCTTGGAAGTCGGAAGAAAGCCGCCTCT 1161444 32 100.0 33 ................................ ATCGCGTATGGCCTCTTGATCTACGCTAGGAAT 1161509 32 100.0 34 ................................ AGCAAGTGCTCGCTTCGCTCACAGGGCTATCGCC 1161575 32 100.0 39 ................................ CAGTTTCTGAATCTCGTCAACAGCAAATATCACACCATC 1161646 32 100.0 35 ................................ AAACTTTCCACGTCATGCCTACGCAAAACACGTAG 1161713 32 100.0 34 ................................ TAGGAGTAGCAAGGATGCTGCTGATGCAACAAAG 1161779 32 100.0 35 ................................ AGCTGATTCGCAACTTTCCGACTTTTTCAGCAGCG 1161846 32 100.0 34 ................................ TTTCTGTTTTGTCGAGTGGTAAGATAAAATGCCT 1161912 32 100.0 34 ................................ CAGCCTTGTCTTTTAAAGTAGATCAGCATCAATG 1161978 32 100.0 35 ................................ AGCAATGTAGCGTGCATTAGCGCCCTGGTATTTGC 1162045 32 100.0 34 ................................ ACTGCATGACTATCGAACACAAGTGTTTGGTTGT 1162111 32 100.0 34 ................................ ACGATAATTTAGACAAGATGCTGCTGGTACTTTT 1162177 32 100.0 35 ................................ GAAAAGACTAGCACGGCGCTCGGTAAGGTTAATGC 1162244 32 84.4 0 ....T......T..........T.T.....T. | ========== ====== ====== ====== ================================ ======================================= ================== 26 32 99.4 35 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : CCGACTATTAAAACAGGCTCAACAGTACGTCGTTCAAGTATTTGGTGATCAGCGTACTAGCGAAAACTTGGTTAAAAACGGTGTTGCACGTTTCGATGAGCATACGGGATTATGGATAGCCAGAGAAAGTCAATATGACGAAGATTTTGGATTGGATACAACGGACAAGGCCATGAACTATTTTGTATAATTAACAATCTTAAGTTGAAATTTAGATAACTTGATTTGTTGTCGAAGTTTCAAGGACAGGGTAATCTGAAGTGAGCGGTATTCAGTTGAATTGAAAACTGCTTTCTGGTGACAAGATGATTTCTAGCATCACTTTTTGTAATGCCTTCCTTTGGTGCGAATGGTAGGTAAACATATAAACCCGGGGAGATTCGCACCAGATTTATATCTGAAAGTACCGTGTTGACGTTTTATCTAGACTTTTGATGTGTATAGTTAAGCACCAGCCGCAAGATGTTGTGATCTTTAGGCTTTTTGTGCAATATCTTGCG # Right flank : TTCTTATGATCTTAAGGTTGGTGGAGCACAATTTTTAGTCCACATGGCTACATGAATTACAACTCGCGACTGTCTGAACCAAAGCAACGTTGCAGTTAGCGTTTTGATAACTACCTGCAGCGTAGTCCTCGTAATTGAGTGCCTCGAGAATAACAACAATACTCAATAACGGTGATTTTAAAAATGGCCTCTTCCAATAACAGGGAAAAGGCCATTTTATTATATTGAACATTGAATTACATATCGACCATGATTAACATCTGTAAATCAACAATCTCACAGGAAAATACGCCGTTCATTCGTGCACTTTGACAGTTTGATGATCTTGAAAATATGAGTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAACCGTCGTTTGCCTCAACGACTAAAGTACGATTATCTGCTGTAACACCAATATCAATGGAACACGCGCTTGGAGCTTCTTTCCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.40,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2133398-2130589 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS991421.1 Lacticaseibacillus zeae isolate CECT 9104 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2133397 36 100.0 30 .................................... TCAATTGCTCTACAGGCGGCCTCATTTATT 2133331 36 100.0 30 .................................... TTAATTCATTGTTTTCCCTAATTAACCTCT 2133265 36 100.0 30 .................................... CTGGAATGGTAGAGGGTCCTACCATGGGAG 2133199 36 100.0 30 .................................... ACCGGAGATGGCCTTGATGTCGAATTTGAG 2133133 36 100.0 30 .................................... ATTGATTACATCATTTTCTACAACTTGATG 2133067 36 100.0 30 .................................... TAGCACGAGTGTTTTGCCATCAAGATTGCG 2133001 36 100.0 31 .................................... TTCGTGGAAGGCTTGAAAACACCAATTTGTG 2132934 36 100.0 30 .................................... TAGCACCGCTTCGGAAGAAATACAAGCCTT 2132868 36 100.0 30 .................................... CACCCTTTTGACTGGCCTTGTCATCCCATA 2132802 36 100.0 30 .................................... CATGAAACTAAAAACTAAACTCATCACCTT 2132736 36 100.0 30 .................................... TATCATTGAAGTACAGTTCAACTGGTTTGC 2132670 36 100.0 30 .................................... TTTCGTCGGGCGTCATCAGAGAACGGCTCG 2132604 36 100.0 30 .................................... ACGGACTTTGATGTGACGGCCAAAGTTTTG 2132538 36 100.0 30 .................................... TCATGTAGTGAATACCGGCAAGCAGGTCAT 2132472 36 100.0 30 .................................... CAGATGAGTGCCGGCAAGATCAGTGCTCAA 2132406 36 100.0 30 .................................... AAGTTGTGATTGATGTTGGTAACAGCCTGA 2132340 36 100.0 30 .................................... TTGCTTGGTGGCATCATGAGCTGGATCAAC 2132274 36 100.0 31 .................................... CGGTGGCGATGGCAAAAAGTACATTGGCACG 2132207 36 100.0 30 .................................... GATGAATCATTTCAGCGAATGTCTGTTGAT 2132141 36 100.0 30 .................................... CAGAACCGCGAACTTTTCACTGGTCACCTT 2132075 36 100.0 30 .................................... AGAGACGATTATAGTTGGCACTCAAGATGG 2132009 36 100.0 30 .................................... CATGATGTCGATCATTGCGTGTTACTCATA 2131943 36 100.0 30 .................................... TATACAGGCTTTCGCCTGGATAAATCAGGC 2131877 36 100.0 30 .................................... ACTGTTCCCGGTTGTAATCAATGATGCGTT 2131811 36 100.0 30 .................................... TGCCACGATCATCTTTAAACCGCTCGCTAT 2131745 36 100.0 30 .................................... TAACGTTGTATTTCTTTTCCTTTGCCACGG 2131679 36 100.0 30 .................................... ACTGTGATTTTCATAAGCGACGGTGTTCAA 2131613 36 100.0 30 .................................... ATGCAATGGCTTTGTGTGCTACCGTGTCAT 2131547 36 100.0 30 .................................... TTGGCATCGTTGACTATCGCTTCACGATCG 2131481 36 100.0 30 .................................... CTGACTCAGTACGCGCAATTCGTTCTGTCA 2131415 36 100.0 30 .................................... CTGCAGCGGTAGCAGTTACCGTTAGCGCAG 2131349 36 100.0 30 .................................... TTGAATAAGGCTCCAAATACCGGAGAAATA 2131283 36 100.0 30 .................................... ATGGTCAGGCTTTACCGGCATGGTAAACGG 2131217 36 100.0 30 .................................... TAAGTTGTCTTGACAACAAACTAAAACGCA 2131151 36 100.0 30 .................................... TATGACCGTGTTGTTATTGGTGATGGTGTG 2131085 36 100.0 30 .................................... CAGCAACGTGCCGCACGGGTATCCGTTTAT 2131019 36 100.0 30 .................................... CGTCATAAATAACCACTGTACCACTATTAG 2130953 36 100.0 30 .................................... CGACTTTGGTGTCATCGTAGAGATAAGCAG 2130887 36 100.0 29 .................................... ACATGCTGCCCTACACTGACTTTGATCGC 2130822 36 100.0 30 .................................... GTGTGCACGTACGCGTTGACATATTCAGGC 2130756 36 100.0 30 .................................... CCTTGATTACGAAGACGGCGCGAGTGCGAG 2130690 36 100.0 30 .................................... GCAGTATTGTTGAAGCCTGAACAGATTCCA 2130624 36 97.2 0 ................................T... | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAACTCGATTTGGATAAGCTACTGCAACGTTGGATTTACAAAAAGATTGCACAAATGATTGACGATCAGCGGCTGGTTAAATTAATCGATCAATCACAACATATGGCCATGGACTTGCTGAAGGATCCCCTCTTGAATGATCTTCCTCTTACAGTTGAGCCCGGTGGGAAGCTGGAACAAATTATGAAATATTGCAATCTTCATTTTGATGAAGGGGTAACTGTAGAACCAGTTTCTAAAATTGAAGCCGCGATTCAAACCTTAACAAAGCTTGAAGAAAAGCGCCTTGTAATTTTGACTAATGTCAGTCATTATTTAGGTGCTAAGGAGTGGAAACATTTGGTAGATCAAGTTAGTGACACCACACTGGAATTGGCTCTCATTGAATTTTCAGATGTCGAGCGAAAGAACTTCTTTGAGAACTGCCAGTATGTGTACATTGACGAAGATTTTATGGATAGCCGGGAGCTGATTGATTAAGAGGCCATGTGAAAACACCG # Right flank : GCTGGAATAAGATGACCCTAAAAGAGGCAGAGTGTGGAAAGAAAATCAGTACAAGAAAGGAAGTTTTAAAAGTGACAACCAAGGTTTACAGACACGCACTTGACCTATTATTAGATGGATATGCACCTGATAATGTAGAAACTTTGAAAACAATGAAGACAAGGGAAGTTTACAGTCGCATTACTCGTAATGGCATGGTTGCCGAGCAACTGGGTGTTTACTTTCCATTAAGGCTTATTGGAAGGAAAGAATTAAGGGAACTACGTGAGGCCGTTCCTCCGGACAAGACACCTTTAGAGATCTCATTAGATGTAGCCACCATTAAAGGTCAAGCAAAACCTTTACACCATTATGCACCGGATTCAGACGTATGGCTTGATAGACTTATCGGGTCTTTATACTTTAGAGGTAGTGATGGTTTAAAATAATTAAAAAAAGCCTTGACAGGTCTCAAATAGAGATCGGAACACCAAGTTCAAAAGTTCTTAAACATGATCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //