Array 1 474739-475985 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATV01000021.1 Salmonella enterica subsp. enterica serovar Newport strain sg_BAA707b agonaBAA707b_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 474739 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 474800 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 474861 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 474922 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 474983 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 475044 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 475105 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 475166 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 475227 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 475288 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 475349 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 475410 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 475471 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 475532 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 475593 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 475654 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 475715 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 475776 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 475837 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 475898 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 475958 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 483930-485831 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATV01000021.1 Salmonella enterica subsp. enterica serovar Newport strain sg_BAA707b agonaBAA707b_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 483930 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 483991 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 484052 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 484113 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 484174 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 484235 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 484296 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 484357 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 484418 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 484479 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 484540 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 484601 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 484662 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 484723 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 484784 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 484845 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 484906 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 484967 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 485028 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 485089 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 485150 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 485211 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 485272 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 485333 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 485394 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 485455 29 100.0 32 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCAT 485516 27 69.0 15 ................TTCT--.C.G.T. GCAACGACAGAATGC Deletion [485558] 485558 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 485619 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 485680 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 485741 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 485802 29 100.0 0 ............................. | A [485829] ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAAATGGTCGTTTTTTTAAATTTTGGTTTGTCATGAATGGTGTTGATGCTGAGAGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAATGGTATTCATGGAAATGGATGTAGATAGAGAAGCTGCAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATTAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAGAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //