Array 1 48472-47875 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCRM02000012.1 Leptospira inadai serovar Lyme strain M34/99 Contig_13_consensus_sequence, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================== ================== 48471 36 100.0 27 .................................... TGGCTCTTTTAAACATATTTCCATTAT 48408 36 100.0 25 .................................... AACTCCATCCGGGGAAAAAGAAACA 48347 36 100.0 26 .................................... AAATACTGGGCAGATCTCTTGAACAT 48285 36 100.0 26 .................................... CGAACATGATTCGATTATTGTAGAAG 48223 36 100.0 26 .................................... ATTATCCGCTCCCGCTTCCGTCTCCG 48161 36 100.0 27 .................................... TCTAGCTGTTACGACTAAATCGTAAGC 48098 36 100.0 27 .................................... AGTTGCATATTTTAATAGAGATTGTAT 48035 36 100.0 27 .................................... ATCTGCGAAAGAATACGATAACTGTGA 47972 36 100.0 26 .................................... GTGATTAACTCATAGGCTTTTCCGGA 47910 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================== ================== 10 36 100.0 26 CTCTAAAGAGAGGAAAGAATTTCTACTTTTGTAGAT # Left flank : GATTACACTCAAAAATATTACAGGGCTTTTATGCGCAATCGACATATAAAAGAATATCCTGTTTTTTTGATTAACGGTGAGGATTAACCATGCTGCTTATTTCTTACGATATCAGTGATACGAAATTGCGAACCCGTTTTGCAAAGTTTTTAAAGAAATTTGGAGAGCGACTTCAATATTCGGTCTTCGAGATTCGCAATAGCGAGCGGGTTCTCATTAATATAGAGACTCAAATTAAGCAATACTTTGAAAAAAAGTTTTCACAAAATGACAGTATCATAATATTTCACATGAGTGCTCATTGTAAAATAACTCGATACGGTTTTGCGAAAAATCAAGAAACAGACCTGCTAATTTTGTAAGCGTTGCAAACCTCCGTCTTCCTGTTTAAAATTGGATGAAAAATACTGTTTATGTCCGAAAAAGTACGAAAAAAACCCCGTTTTCTAATAAATAATGCTGGAAATTACCCCATTTGCGTAGCCTTTATTCGATTACCT # Right flank : GAAATGACATGGATCAAACAAAATGACCTCTAAAGAGAGGAGATACCTAACGTCCAATACCTATACTGCACCGAGCAGCTTCTGTCTAGCGCGAGCGAAGCGAGCGCGTCTGTCCTCAGTCCTCAGTTCATTGAAACAACGGAACAAGTCCATACGCGGACTCGAAAGGTTCCGCTTGTTCTTCGCAGGCCCAAAGTTCTAGGCTTTTGTCATATCCCGCTTTTGCATTTAACGTAAATATAATTTGATTTTTCCTAGATTGGCACTTGATGGATTCGATCAGGCCTTGACGGTTTCGGTTGCAAGCACTTGCAATTCTCAATATACCCGAAAGCTTTAGGACGATCTCTTGCTCTCGATACCCCAAACGTTGGAACTCCCGGTGCTTTACTTTCGGGCCGCTTTTCCGATGATATCTTGCGGTCAGGGCAATGATTTCGATTTCTCCCCAAGTAAATCCCAACATCGCCTCGGAGTTTCGAATCAGATAATAACTATGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAAAGAGAGGAAAGAATTTCTACTTTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 21979-23469 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCRM02000006.1 Leptospira inadai serovar Lyme strain M34/99 Contig_7_consensus_sequence, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 21979 30 100.0 36 .............................. AAAATTCATTATACCGAAGCAAATCAAAGTCTGTAT 22045 30 100.0 35 .............................. AATATAGCGGCAGGATTACTATTTGGGAATAACGT 22110 30 100.0 35 .............................. ATCGAGGGCGGCCATTTTTGAAGTATCCAGTTTCG 22175 30 100.0 36 .............................. TATTATTCCCAGGGGTTGAATTAACTATTACATCCC 22241 30 100.0 35 .............................. TGACATTTCCATGCTCAGGACAAAGACAAAAAGCA 22306 30 100.0 35 .............................. CTGCAGATATTGACCCATATTTACAAGTCGCTGAA 22371 30 100.0 36 .............................. AGAACCTATCCCCGGATAATCTTGAGTTTGTAAAGG 22437 30 100.0 36 .............................. CAATCTGAACGTGAAGAGAAAGAATTAAAAGTAGAA 22503 30 100.0 35 .............................. CATCCGCGAAACAATCAGCACAACGTGATGCGCCA 22568 30 100.0 36 .............................. TAGATTACAACTATTGTATACGATTCCGGTTAATAT 22634 30 100.0 35 .............................. GCGTCGTCTCCGCGTAGAAACGCTCGGGCCTTAAT 22699 30 100.0 36 .............................. TCGACATCATTTGTTCCATTTTCTGGGAATGCTTCA 22765 30 100.0 36 .............................. ACTAACGGTTGTGAATATGTAATTGGATCTTGATTA 22831 30 100.0 36 .............................. AGTTTTACCGAATGGAGAGATTGCGATGATAAAACC 22897 30 100.0 35 .............................. CAAATATTGAATATGCAGCATCTTCGGGACCCCCG 22962 30 100.0 36 .............................. TTTACTGAACACCAACCAATATTATGATGATCAAAT 23028 30 100.0 36 .............................. GAAATTGCTTTGGAAGAGAATAATCATTATTTTTCA 23094 30 100.0 54 .............................. TATCTATTTCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTTGTCAT 23178 30 100.0 36 .............................. GCCGATCAGCGCGGGAACGATTCAGTTTCGTGAGCC 23244 30 100.0 36 .............................. CGGAAAAAGATTCAATGAACTAAGACCATTGATCAA 23310 30 100.0 35 .............................. CTGCTGGAACTTGTCCGCTGGCAATGGCTCTACCG 23375 30 100.0 35 .............................. TTCAAAACTTTAATCTATATTATCGTCTTGGCATG 23440 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================== ================== 23 30 100.0 37 CTTTTAATCGAACCAATCTGGAATTGAAAC # Left flank : AAAGAAACGATACAGCATAGACAATTGGAAAAGAACGTAAGCTATCGAAGATTGATTCGCCTTGAATGTTACAAGCTCGAAAAGCAGCTGCTTGGTATCGAGCTGTATAAACCGTTTGTATCTTGGTGGTGATTTATGTATGTGATTTTGGTTTATGATGTTAATGCGAAGAGAGTCGGGAAAATGTTAAAGCTCTGCAGAAAATATTTAAACTGGATTCAAAATTCGGTCTTTGAGGGAGAGATTACTCCGGCAAGATTGGAAAAACTAAAAATGGAGGCTAAGAAGATCATGAAATCTGCAGAAGATAGCATAATTTTATTTCTCAGCCGAAATGAAAAATGGCTGGAAAAGGAGATAATCGGAGTTGAAAAAATGCCGATAGACAACATTCTTTAACAATGTCGTCGATCCCCCAGGAAAATTCGGCTACCGGAGATCGACGACTTGCCCACTGCATAGACAGTTTCCAATCAAGGAATACTGAGTGTTTAAGCGGG # Right flank : CCTATCTCCTCCGCTTCAAATCAACGCGTTATTTTATCTAACCTAGTTACGTTTTAGGAGACACTTTTTAAGCAATTCTTTCTTCAAATTCCAGTGGACTCACGTATCCTAAAAAGGAGTAAGACCTTTGTCTATTATAAAATACTTCTATATGATCAAAGAATGCAGATGTAGCCTCTTCGATACTATAGAAGACGTTATATTCCATTTCTCTTTTAAGGGAAATGAAGAAAGACTCAGCCACAGCGTTGTCCCAACAATTTCCTTTTCTACTATTGCTTCTCCTGATTTTATTTGATAACAGAAGTCCACGAACTTCACGAGAACAGTAATTAGAACCACGGTCTGAGTGGAAGATTAAACCCTTGCTTGGATTTCTGGATTCGATTGCCTTCTTGAGCGTACTAAGAACAAGTCCGGAATCATTCCTTTTGCTCAGAGACCAACCAACCACTTTTCTCGAATACAAGTCTATGATCACGCAAAGGTAAAACCAACCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGAACCAATCTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //