Array 1 39693-42405 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEEE01000018.1 Vibrio cholerae strain BD21 BD21_S21_L001_R1_001contig_18_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 39693 28 100.0 33 ............................ TATGAAAGCTTGCGCCGTCATTTCACTGTGTCG 39754 28 100.0 33 ............................ CAAATCAAAGCGATGAAAGAGCATCTTTGACAC 39815 28 100.0 33 ............................ CAAGGCGCGGTGTGCTCTACCTTGGAACAAATC 39876 28 100.0 33 ............................ CATCAGTCGTTGACTTTCCCACTGGCGTAGCGT 39937 28 100.0 33 ............................ TTCTGTTGTGATCCATTTGGGGTGGTGTGGGGT 39998 28 100.0 34 ............................ CGGTACATGCACCATCAAGTTTAGCATTGATGGC 40060 28 100.0 33 ............................ TCAGCCGTTGCGTCATTCGCTGCGATCGCTTCT 40121 28 100.0 33 ............................ CATCAGTTGTCGTTATCTAACCTACAGTCGAAA 40182 28 100.0 33 ............................ CTCCCCATCAACTTCAAGTTCGATTTTGGTTAA 40243 28 100.0 33 ............................ TAAAAACTGATACAGCTTATCGGTCATATGTTA 40304 28 100.0 33 ............................ CCCAGATATATTGGGTCTGTGGCGTTCTTTGTT 40365 28 100.0 33 ............................ TTACACTATGGTAGTGATTGGTGTAATTGGTCT 40426 28 100.0 33 ............................ CAAGCGCACTTTAATGACCACGGTTGCGGTAAA 40487 28 100.0 33 ............................ CGATTAAGCCAAATTAACTGGCTTTGTTGGCAC 40548 28 100.0 33 ............................ CTATATCATCCCAAGTTCTGGAAAGTTAGATAG 40609 28 100.0 33 ............................ TGTTTCTTCGTTATGGTTAAAGGTGTTCTCAAG 40670 28 100.0 33 ............................ CTTCCGCTAACGCCACACCACATTGACGGCGAA 40731 28 100.0 33 ............................ TCCATGCGCCTGTTTCGTCTTGCTCTTGGATCA 40792 28 100.0 33 ............................ TAGGTGCGCTGTACCGTTGAAATCTCCTGTATT 40853 28 100.0 33 ............................ TCGTTGTAACCATGAAGGCCACGACCACGCATA 40914 28 100.0 33 ............................ GGATGCATTAAGTAAAACCGAGACCACGAATAT 40975 28 100.0 33 ............................ TCACCTTTGCTGTGTTTAAGCTTTCACTAGAAA 41036 28 100.0 33 ............................ TAATACTTGCGAAGGTGCGGAAATTGGCATTGC 41097 28 100.0 33 ............................ TAAGGGTTTATTAGCCCATACCGCTTGATAGTG 41158 28 100.0 33 ............................ CAACTAAAAGACATATTGGCTAAGCTAGATTGC 41219 28 100.0 33 ............................ TGAGGCTTGCTCGACTCTCGCCGCGCCTAGTTG 41280 28 100.0 33 ............................ CGCCCGATGTTCAATTTGTTGCTACTCATCGAC 41341 28 100.0 33 ............................ TCAAATGCTTCCTCGCGCTGGCGTGCATGTCGC 41402 28 100.0 33 ............................ CATTCTGCAAAAGAGGTCAGCTACGTTGAGGGG 41463 28 100.0 33 ............................ TCAAACGTGTACGCTCCTTGAAACCTCAACAGC 41524 28 100.0 33 ............................ CGAGCGATGAAGTTAATTGATGATTGGAAGCAG 41585 28 100.0 33 ............................ CGCTGACTCGCTTAGCTTAACCTTTCCAGTCGT 41646 28 100.0 33 ............................ TCCCACGCTAGTCCTTTGTCTCTTCCTCCTTGT 41707 28 100.0 33 ............................ TAGTGCAAAAGTTTTTGTGAGAGCGAAGAGTTG 41768 28 100.0 33 ............................ TGTAGCCCTGAGCCATCCACTTAACCACGGTGT 41829 28 100.0 33 ............................ TAGAGCTAAATTCGATATATCAAAAGAGGATTT 41890 28 100.0 33 ............................ TAAAAGTGGGGTTCGCACCTGCAGAGAGCATCC 41951 28 100.0 33 ............................ CGCAAGATGGTTCTAATTCCTTTGGCTCATTCA 42012 28 100.0 33 ............................ TTTAAGATCCTCAACTGGCGCGCTGCATTAGCG 42073 28 100.0 33 ............................ TACAGAATTGAGCTTTCTGCGTCTGAGTGGCTG 42134 28 100.0 33 ............................ TATCCAGTGCATGATTGATGATCTTGCAATCGC 42195 28 100.0 33 ............................ TTTGTGCGCCGTTTTCAGGGTTGATGATTTTCA 42256 28 100.0 33 ............................ CGTCTGGCGTTGGGTCTTTTGATGATTGTCGAG 42317 28 100.0 33 ............................ CTCACAGAGCTGATCATCGAAGCCCGTGAAGAC 42378 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 45 28 99.4 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //