Array 1 486135-486884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQC010000008.1 Cronobacter sakazakii strain HA18076 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 486135 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 486195 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 486255 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 486315 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 486376 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 486436 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 486496 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 486556 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 486616 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 486676 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 486736 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 486796 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 486856 28 85.7 0 ......................C.T.TC | T [486876] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CCAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2117416-2115556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQC010000006.1 Cronobacter sakazakii strain HA18076 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2117415 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 2117354 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 2117293 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 2117232 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 2117171 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 2117110 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 2117049 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 2116988 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 2116927 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 2116866 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 2116805 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 2116744 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 2116683 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 2116622 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 2116561 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 2116500 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 2116439 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 2116378 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 2116317 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 2116256 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 2116195 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 2116134 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 2116073 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 2116012 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 2115951 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 2115890 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 2115829 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 2115768 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 2115706 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 2115645 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 2115584 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2145248-2143633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQC010000006.1 Cronobacter sakazakii strain HA18076 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2145247 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 2145186 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 2145125 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 2145064 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 2145003 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 2144942 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 2144881 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 2144820 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 2144759 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 2144698 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 2144637 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 2144576 29 96.6 32 .C........................... AGATTTACGAAATAGACCCGATTCAGTGCATC 2144515 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 2144454 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 2144393 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 2144332 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 2144270 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 2144209 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 2144148 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 2144087 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 2144026 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 2143965 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 2143904 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 2143843 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 2143782 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 2143721 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 2143660 28 72.4 0 GC.......-..TC...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //