Array 1 235722-237009 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZP01000001.1 Aliivibrio finisterrensis strain A9 NODE_1_length_313172_cov_132.189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 235722 28 100.0 32 ............................ ATCGGAATAACAGCAATTATATTAATTTTATT 235782 28 100.0 32 ............................ AAATAAATACAAAGATAATCGCATTGACAATA 235842 28 100.0 32 ............................ TCAGTATGGTGCAACCCGCCATATAGCGATAT 235902 28 100.0 32 ............................ AGCAAGACGAAGAAGAAAAAACAGAATAAGAA 235962 28 100.0 32 ............................ ACAGTCAAAGATAAACCCACGACCCAAGAATC 236022 28 100.0 32 ............................ AAGCCGCCACCTGCTACGACAAAAAATATCAT 236082 28 100.0 32 ............................ AACAACAGTTTACCACGTTGGAGAAGATGACT 236142 28 100.0 32 ............................ TGTTAACTGGATAGCTGAGGCTATTGCTGATT 236202 28 100.0 32 ............................ ATCAAAAGAAAATAAAAAAAGATGTAAATCTT 236262 28 100.0 32 ............................ ATCTAAGTTTGATGCTAATCCATTTTTTCAAG 236322 28 100.0 32 ............................ AGAAAGGTTGATGGAGATTGGTACTGCTGCGC 236382 28 100.0 32 ............................ CACCGCCATTGGAGGGGATAAAAACTCGTAAA 236442 28 100.0 32 ............................ TCGCGCAGCTCGTCAAAAATAACAAAGTGCCG 236502 28 100.0 32 ............................ AAGCAAGTCCAATCCGTCTAGTTGCTCCGTCC 236562 28 100.0 32 ............................ ATTGACGATTTTCACGAAATGTTTGGCCGTGA 236622 28 96.4 32 ............G............... TAGACCGTAAAGCAATACCTAAGTCTGACCCA 236682 28 100.0 32 ............................ ACAAAGCATCCACGGTTCAGTTCTTACAACCC 236742 28 100.0 32 ............................ ACCGCCTCTTCAAATTGACTGACACATTCGTA 236802 28 100.0 32 ............................ TTTACTATGTTTCGGCGGCGAACCGCTAATAC 236862 28 100.0 32 ............................ ATTAAAAATTATCTCTAATCAATTTCCAAATG 236922 28 100.0 32 ............................ ACCACTCTTTTTAAAGCTAATCCTGGCAAACC 236982 28 67.9 0 .......A...C.....T..AA..ATTG | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAAAGTAAAGGGAGTTACATAACTCGCACTTAATTGCTTTTCAACCTGATCAACAAGGCGCTGTTGGTTGCACCATAAAATGCAGTTATATTTTTGGTGATTAATGCTTTTAATTAGATTGATTAAGCAGACTTCAGAACCACGGATCCAATCATCACCATAATGAACAAACAGTAAGGTTGTTTTTGTTGTATTTTCCATAGCACACCTTCCTCGCATTCTCTCTGATATAAGAGATAGAGCAAGGGCAGTGCCAGATTGTAATTGTTTTTATTTTATTGATTTTTAAAGGGAATTATTATGTGTATAGATCAGTTTTCTCAAATTGAGAATGTGGTTTTTTAAATTGGGAATCAGAGAGATAAAAAATACCAAAAAAAATAACGTTAACAATAGAATAATAAAATCAATGAGTTACAGGTTGGTTGGGAAAGTAGGTTAAAAAGTAATATTTAAGCTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTACT # Right flank : GATTAAAATAACGAGATAACCATCATAAAATATCGATAAATATACTATTTTATTTATGAAATAGTATTATAGTAACTCTTTGTTTAATATTAACTTTATTGATAAGGCTGTTAATAGTGGAGCAACTCTCTCGTTTATCAATTATTCATAAATTACTTAGCCAATCCAAATACCCAGTACCGAAAAGTAAACTTCTAGAAGCGCTAGAGTGCTCAGAATCCACATTTAAACGGATACTTCGTAAAATCAATGACGAATTTGATGCTTCAATCTCATACGATAGAGAACTAAAAGGATATGCATACGATTCTGATAGTCATCAACTTCCATTATCGTATCTGAATTTTACTGATAAAGAATGGTTTGCCTTATTAACCGCAGAAAAACTATTTACCGATCTACATACAGGATCATTAAATAAAGAGCTAGAAGGGATCAAACACGTTCTACAAAAGACAAAAAATCGAGCAACAGATTTTGGCATCGCTAATAAAATAGAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 246594-249021 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZP01000001.1 Aliivibrio finisterrensis strain A9 NODE_1_length_313172_cov_132.189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 246594 28 100.0 32 ............................ ATGGCTAGGACCAAGCACAGCAAAGGCTTATG 246654 28 100.0 32 ............................ ACTAGCGCAAATTTGGACAATTTCCGCTAACC 246714 28 100.0 32 ............................ TTGTGTTTAGTTGTTGCAATAAGCTCCCTAGG 246774 28 100.0 32 ............................ ATTCGAGCAGCTTGAATGTACGCCTTATGTCT 246834 28 100.0 32 ............................ TCCTCTCGCAAAATTAGCAATTGCTAATTTAG 246894 28 100.0 32 ............................ AAGAAAACAGAAAACAGGCCAAAAACGGTTGA 246954 28 100.0 32 ............................ GTTAACTAACCATTGACCCTCAAATCCTTTGT 247014 28 100.0 32 ............................ AAAAGCCACGTAGTGTATGACCAAGAAATGGC 247074 28 100.0 32 ............................ GTTCAGCAATAAATCAATCGCACGACGATATT 247134 28 100.0 32 ............................ AGAACGGTATAAGCAATATCAAACCCATCAAC 247194 28 100.0 32 ............................ TGACGTTGGTAAATCTTGCTTGTTACTGGGTA 247254 28 100.0 32 ............................ ATGCTCATGAAAGAGATTGCAGCTAGGTTATA 247314 28 100.0 32 ............................ ACGTTGGAGAAGATGACTCTTATGTTGTTGTT 247374 28 100.0 32 ............................ TACGATTTTCATTTTAACGCCACATTTTCCAA 247434 28 100.0 32 ............................ ATGGAAAGTTTATGGGAACTTGGTTTGATTTC 247494 28 100.0 32 ............................ ACTGAGAAATTCAAAACTTGCTGTGGAAAATG 247554 28 100.0 32 ............................ CTTTAATTTCTTTAATTGGTTACATAACCCAT 247614 28 100.0 32 ............................ TGAAGCTTAAATGGTTATAAGCAGTCGCCTCA 247674 28 100.0 32 ............................ TAGCACTAAATAACCAAACAATGAGCAGTCGA 247734 28 100.0 32 ............................ TATTAATTCGTGATGGCCGTTAACTTGAGTGT 247794 28 100.0 32 ............................ TTCTTAGGGAATCCATTCAATTGGATCATTAC 247854 28 100.0 32 ............................ TTGTTCGCCCCCTTACAAATGAATTTGAAAGC 247914 28 100.0 32 ............................ TCTCATAATGCGCACTTAGCTACGGCTTCTTT 247974 28 100.0 32 ............................ TTTGGAGAACGGCCGCGAGGATTTAATCTAAA 248034 28 100.0 32 ............................ ATCCAGTACCAGACACCAGAAGTGACGTAGTA 248094 28 100.0 32 ............................ GGCTAAAGACGATCCACCACTTGTTACTCGTT 248154 28 100.0 32 ............................ TAATTCTCAACATTTCTGTCCTTACCCATCCA 248214 28 100.0 32 ............................ TTGCTGATAGATCAGATGATTTATCAACCAGT 248274 28 100.0 32 ............................ TTGACTACTACGTAGAATTTAACAAAGTTAGA 248334 28 100.0 32 ............................ GACAAGTGTGTAAGCTCGGCTGAATCTTGTAT 248394 28 100.0 32 ............................ CGCTACACGGTCAAGCAAAGGGTAGTGATGGA 248454 28 100.0 32 ............................ ACACTCAATCTGGTCTATAACCATGTTATTTT 248514 28 100.0 32 ............................ AATCCAAAGCGCAATGAAATCGGTATTGTGTG 248574 28 100.0 32 ............................ ATCAACTTTGCATCGATAGCTAAAGTGAATAC 248634 28 100.0 32 ............................ TTCCACAATGAAGATGATCGAGAGTTAGATTC 248694 28 100.0 32 ............................ TTGAGTTAATCCGCTTGGCAATGCTGCTGGAT 248754 28 100.0 32 ............................ AAGAAAACGAGATCCGATAATTTCATCACTCA 248814 28 100.0 32 ............................ AATAGACAGGCGATTGACGAGAACCAACCGAA 248874 28 100.0 32 ............................ ACCAGAAAAACCAAATAACATTATCTATATCC 248934 28 100.0 32 ............................ TAACATCCCGTAAGCCAACATGGCTCTAGAGT 248994 28 75.0 0 ...........TG........AA.AG.G | ========== ====== ====== ====== ============================ ================================ ================== 41 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAAGCAGTTATTTGAGATAAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTCATTGGTTCCAGAGGGTTGTCAATATCGCTGTGTAAAACGCAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCCTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAACATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACGGTCCCTTGGTTTTAACCCAAAATAACCAAAAAAATGGCTCTTTAAAATGAAGTAATAAAATCAGTAAGTTACAATAGGTAGGGGAAATTAGGTAAAAATGGGTATTTTCACTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : GTTAAGAAAGAAGTTTGATAGCTATACCTCATATACTTTTAATATTTGCGGTATGACAGCGTTGCTAGAAAATTGATCTTGAATGGTTCTTTGGGCTGCGTGTTGAATTTCAACTTTATTAATCGATGACAATTCAAACCAGTGGAGTAGGGCTTGAGAAAGAGCTTCTGGCTCGGTTATCCATCCATTCATTTCTGGCTGTATGAGTTTACTGATATTACCCACAGGGGTTGATATTACTGGTATTCCTCTTCCCATCGCCTCTAATGCCGTCATGGGGAGCCCCTCGTAGCGAGAGCAGATAATCAGTAAGCCAATATCATTCCAAATGGTGTCCATTGAATCTTGATGTCCATGAAAAATTACGTTGTTTGGAAGGTGTTTAATCAGCTCTTTCTCCATCGGGCCTGAACCATAAATATGAAAAGAGTGATTAGGGTGTTTCTTTGCTAATTCGATGAATCTATCAGGGGCTTTTTCATGGCTTAAACGACCTACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //