Array 1 274450-275637 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIBJ01000037.1 Escherichia coli strain 06-A102-A entry37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274450 29 100.0 32 ............................. AATTACAACTGGGATTCATTGCAAATCAGGAA 274511 29 100.0 32 ............................. AAACAGGCCGGAGATCAGTTTAATACGCTGAT 274572 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 274633 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 274694 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 274755 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 274816 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 274877 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 274938 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 274999 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 275060 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 275121 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 275182 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 275243 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 275304 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 275365 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 275426 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 275487 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 275548 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 275609 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291139-292510 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIBJ01000037.1 Escherichia coli strain 06-A102-A entry37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 291139 29 100.0 32 ............................. CCGTAATATTCAACCTCGCCACCGAATATCCG 291200 29 100.0 32 ............................. CAGAAATGCTGATGCGATCTTCAATTCTGCAA 291261 29 100.0 32 ............................. GGAAGTTAATAACGGCATTACAGAGTGTGAAA 291322 29 100.0 32 ............................. TAACGAGGAATTAAAAGCGGCAGTCAGGCGGG 291383 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 291444 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 291505 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 291566 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 291627 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 291688 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 291750 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 291811 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 291872 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 291933 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 291994 29 100.0 32 ............................. GGGATGAAATTGAACTTCTAGGCGACCGACAA 292055 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 292116 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 292177 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 292238 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 292299 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 292360 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 292421 29 100.0 32 ............................. CTGAAAAAAAGGGACTGGGTAACAGCGCGTGA 292482 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGTCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //