Array 1 441925-442435 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG704863.1 Enterobacter cancerogenus ATCC 35316 Scfld0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 441925 28 92.9 32 ...........G.T.............. TTCACCCGTCCGCCCCCAGGGGCTCCCCTGAT 441985 28 92.9 32 ...........G.T.............. AACAGACCGGGGTGAATGAGCAGAGCTTTTAG 442045 28 92.9 32 ...........G.T.............. GTCTGACGACGGGGATATAAAGCTGGGTGCAT 442105 28 100.0 33 ............................ AAAGAAAGGGCAGTTGTTAATCTGCCCTTTGTA 442166 28 100.0 33 ............................ ACGCCCCGCAAATCAACGTCCCCGAAGATCTGC 442227 28 100.0 32 ............................ TGGTTACTCAATTCCTCCCGCGACCTATACTC 442287 28 100.0 32 ............................ TTGAAGCCTACGGCCACCGGCTGTCACGCGAC 442347 28 100.0 33 ............................ GGACGGCCAGCACGTTGCTGCACGAAGCGGATT 442408 28 89.3 0 .......A..CC................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGCACGATCCCGCGCAGACCGCCAGTTCACCCGTAAGCTGCGCTTCTGCGCCTGCGGCAAAGGCGGCAACCTCCTCATGGCGGGTCGGCATCCATTCGATGGTTTTCATCTTATTAAGGCTGTCGCTGAGTCCGTTCAGGGAATCGCCGGTGACGCCCCAGATACGTTTTACGCCAGCCTGTTCAAGGGTTTTCGCTATGTAAGCAGCCACGGTTTGTTTCATGGGTGTCCTTCTCCTTTTTGTGATATCGCTTACAAGCTTAGAAGAAAGTCGGCGCATTGCCCGTTAAATCCCCCGCTGCGCACAGCGATTTGCGGAAGCGTGGGGGGTGTTGTTCATGGGGAACAACTACACCAGTGCGGGTGAAAACCCTTTTTTTAGAGCATGTGTAAGTTGTTGATTTTTTATGGGGCGGTGGAGGTGTCTGGAAAAAGCGTGTGCAGAAGAAAGTGAGGGGATAAGATTTATTTTACAATGAGATAGGTGTAGATTGTATGA # Right flank : ATCCCCAGCCACACTCCCCGTAGGTCGGGTAAACGCAGTGCCACCCGACAAAAAAGCCCGGTGCGCTAACGCTTACCGGGCCTATGAGCGAACCTTTACGTTTTATGCGAGGACAAGATCGCCCTGCGGATGACAGGAGCAGGCCAGCACGTAACCGTCGGCGATTTCTGCGTCCGTCAGCGTCATGGTGCTGCTCACGGTATATTCGCCGGAAACCACCTTCGTCTTACAGCAGCCGCACACGCCAGCGCGACAGGCCGCGGCTACCGGCACCTTGTTGCTTTCCAGCGCTTCCAACAGCGTGGTGCCCACGCGGCCAAAGAAGGTTTGTGCAGGTTGCAGCTTAGTGAACTTGATCCCGCTGGTTGCCGCTTCGGCGACAGGCGTGAAGAACTGCTCTTTAAAGAAGCGGGTCACACCCAGCGCTTTAACCTCTTTTTCCACGATATCCATGTACGGCGCAGGGCCGCAGGTCATCACGGTGCGGGAGGCAATATCCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 456766-457878 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG704863.1 Enterobacter cancerogenus ATCC 35316 Scfld0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 456766 28 100.0 32 ............................ ACCAGCATCTGTCGTTTTAAACGAGCTTGCGG 456826 28 100.0 32 ............................ AGCGACGCGTCTGCTGCGAGCATGTCGTCACG 456886 28 100.0 32 ............................ CTTAGCAAACCAAAGCACTAATGAAACAATGG 456946 28 100.0 32 ............................ CAGAAGCGGAACAATCATGTGATTCCCGATTT 457006 28 100.0 32 ............................ GTCATTCGATGCAAGAATTGACGAGGCCACTA 457066 28 100.0 32 ............................ TTCTTCGCCCCACAGGTGACCAATCATTTGCT 457126 28 100.0 32 ............................ CGGAGCTACAGAACGAACTGCTTCACAGCATC 457186 28 100.0 32 ............................ GAAAAACACACCCATCATCCCATCAATGGCAA 457246 28 100.0 33 ............................ TCTGGAAAAAATAACAACGGCTTTTACTGGTGC 457307 28 100.0 32 ............................ CCACGTCGTCGCGTCATTGGTCAGCGTAAAAT 457367 28 96.4 32 ............G............... CGAAGTTATTGATGGACGCTGGTACGCTCAGC 457427 28 96.4 32 ............G............... AGTTGAAAGTGTTTGATAAGCTTCCTTCAAAA 457487 28 96.4 33 ............G............... CAACGCGGCATACATGGCGCGGCGGAAATGAAA 457548 28 96.4 32 ............G............... TGCGGAAATCGCTATGCCGGAAGTTAAGACAT 457608 28 96.4 33 ............G............... CTGGACCGCATACAGGCAACCCCTGCGGTTCCG 457669 28 100.0 32 ............................ TTTCACTGCTACTGATGCTGAGTATTTTATAG 457729 28 100.0 33 ............................ AGGGATACAACCCTGATACCCGCACGATCATGC 457790 28 100.0 32 ............................ CATGAAACTGACCCCATACGGTGGATCGGTTA 457850 28 96.4 0 ........................T... | T [457874] ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCGATGGGCGCGCGTCCGATGGCGCGAGTGATTCAGGATAACCTGAAGAAACCGCTGGCGAACGAGCTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTAGCGCTGGATCAGGCCAGGAATGAACTGACCTATGACTTCCAGAGTGCGGCGAAGCACAAGCCGGAAGCGGCTCACTGATTTAAACGTCAGTCTTAAAAACCGGGTGAAAGCCCGGTTTTTTTATGGCTGGACAGAAGCCAGTAATATTGCGCGCGCATCTGCCTCCTTTTTTATAAAAGGAGAGGAATAAGTTGAGAAGGGTATTTCTGCGTGGGTGATTATTGAGGTCTCAAAACTTTTCACTTTCTGCATTTAAGGGAAAACCCTTTTTTTTAGCCCTGTCGTAAGGTATTGATTTATGGTTGGGTTATTTGAATGCCGGAAAAAGGGGTTTAAGCAGGAATATTGCTTTTATTTTTCTTAAACAATAGGATAAGTGAGTTCTCTTCCA # Right flank : AAATAAACCAGCCGACAGTGCGCCGCCCCGCTAGTTCACCGCCCTGCAAACACCCCACAATACATAAACCCTACAAACTCCCGACAGTAATTCATCATCCTAAATAATATATTCAATCAAGAAACTAATCATTTCTCTCTATATCATTCATCAACTCATTACACCCATATAAAACCTAAAATACGTATATTTATTTTGTATGGATAATTTATTTATATGAATGCCAATAATGATTAATGACAAAATTAAACAGTTGCGTGCAAAAATACCTGTCAACATCACGACTTATTTGAAATAGATCACATCCAGGACCTGCAAAATGCCGATACCATAAACGCCATTGATATTTCATTTGATGTATTTTATGTCGCAGCCAACTATTACTCCCTCAGATTTGAAAACGATTCTTCATTCTAAACGTGCAAATATCTATTACCTGGAAAAATGCCGCATTCAGGTGAACGGTGGGCGGGTAGAGTATGTCACGCAGGAAGGTAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //