Array 1 72907-77378 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHPH01000008.1 Pseudoalteromonas porphyrae strain UCD-SED14 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72907 28 96.4 32 ..........G................. ATCCTGAAACAGGCGCGTCGTACTGGATTAAC 72967 28 96.4 33 ..........G................. CTGCAAGAGGAACACACCCCCTTGTCACATTAA 73028 28 96.4 32 ..........G................. TATATAGCGCATTAAGTGAATAGTTTGTCAGG 73088 28 96.4 32 ..........G................. ATCCTGAAACAGGCGCGTCGTACTGGATTAAC 73148 28 96.4 32 ..........G................. GTCAATCCAAGTCGTTGATGTTACTTCACACT 73208 28 100.0 32 ............................ TGCAAAACGAAAGCAGCCACGCGCCATTGCAT 73268 28 100.0 32 ............................ ACCAACGGGTGACCAGATGGTATGGGTATCAT 73328 28 100.0 32 ............................ GCGAACGTAGGCATGCAAGTGGGCTTACCTAA 73388 28 100.0 32 ............................ AACATCAATAACAGTGGTATTAACTCAGCATT 73448 28 100.0 33 ............................ CTGAAGCCGTGGCCGCAGAGTTAAAAAACAACC 73509 28 100.0 32 ............................ AGGGACAGTAAAAGTTGAACAAAACGAAAACC 73569 28 100.0 32 ............................ TATTGTTGACTCTGCCCATCTATTACTTATGA 73629 28 100.0 32 ............................ AAACGGTAGTTTGTATTTATTTTGCGGTCATG 73689 28 100.0 32 ............................ ACCTCAATTTATTCAAGGGGGTATTAGTCAAC 73749 28 100.0 32 ............................ GTTTGGGAAACTAACATTACAGTTATGGACGC 73809 28 100.0 32 ............................ TTATGCAGATTTTGCAGATAAAAAGGCAAGTT 73869 28 100.0 32 ............................ TTTGTGGCAGGTGCACGGCCATTTTTACTGTG 73929 28 100.0 32 ............................ TTATGCATCATTACAAAGCACAACAGCACTTA 73989 28 100.0 32 ............................ GCACGACGGGAACGTGTCAACGCGGTGGGATG 74049 28 100.0 32 ............................ TAGTTGTTATTGCTACATACTTAGATGAAAAG 74109 28 100.0 32 ............................ AAACGACTCTGATTTTTTATCAACGTTAATGT 74169 28 100.0 32 ............................ TAACAAAAGATTACGTTGCAAGTATCAATAAC 74229 28 100.0 32 ............................ CTCGCCCTGTTAAACGTATTGTTTTAGGTTAA 74289 28 100.0 32 ............................ TTTAGCCGCCATATTCACCCCCATTGATTAAC 74349 28 100.0 32 ............................ ATTAAAAAGAGCGAAAATTTCGCTCTTTTCGC 74409 28 100.0 32 ............................ AAACGGTTGAAGGTTGTGTGAATGTCATTCCA 74469 28 100.0 32 ............................ TTTAACCATGTCATATTGGCGATTTTGTAATT 74529 28 100.0 32 ............................ CGCCGAGATTGACCGCGATTACTATTGCTGTG 74589 28 100.0 32 ............................ GCCGTTGCTATGCTGTCCGCTGTTACTCCAGC 74649 28 100.0 32 ............................ AGCAATCCCGCCAAGTGTATCAAAGTGATCTT 74709 28 100.0 32 ............................ ATTCAGCACAAAACCCGCGTTCGGGTATTTTA 74769 28 100.0 33 ............................ CATTGCGTGCTAAAATATGCCCCAAGCTTTGTT 74830 28 100.0 32 ............................ AGAGCCCGCCGAAGATAAGTTTTGTACTGTTA 74890 28 100.0 32 ............................ AATTATACGGGTATTCACCTTTGTTGTTTGCT 74950 28 100.0 32 ............................ AGCATCACCAAAGTTGTTTTGCCATGCTGCTA 75010 28 100.0 32 ............................ GTTTTGGAATGTCATTAGTTCCTTTAGCAGAT 75070 28 100.0 32 ............................ ATCAAATGATTCGCTGTATGTTTCAAATGCCC 75130 28 100.0 32 ............................ TAATAAATTAAATCGTGAAGACATTGTTTTAC 75190 28 100.0 32 ............................ TAAAACACATCTAATTTTTGAAGGTGTTGAAT 75250 28 100.0 32 ............................ TTGTAACCGTTGATGAGCATTACCGCGTTAAC 75310 28 100.0 32 ............................ TCAATGGTGTGGTGCAATAAAAAAGATCCTTT 75370 28 100.0 32 ............................ TGATGTTAAGAAAGCTTCCATCGGTGTCGATG 75430 28 100.0 32 ............................ CGGGCACTCTGAAATAGTGCGTGACAATTCAA 75490 28 100.0 32 ............................ ACCCATTTTAGTGTTGGAGTGGTTAATAAAAT 75550 28 100.0 32 ............................ GTATTGTGTAAGTATAACCGCTTTTACCGTGT 75610 28 100.0 32 ............................ TCCACCAGTACCGTCCTTTTTGGTTCCGTCGT 75670 28 100.0 32 ............................ TGGCATAACTTTTATGCTAAATGGTTTTAACT 75730 28 96.4 32 ............G............... ACAGGCCAGCGCGACAAAATCACCCGCTACGC 75790 28 96.4 32 ............G............... AACTGAAGATGACTACAAAAAAGCCTATGAGT 75850 28 96.4 32 ............G............... CATTGGAGCCGCGCAATGTCTAAGATTGTAAA 75910 28 96.4 32 ............G............... GCCAAGCCAAAGGACATAATTAACAGGCGGTT 75970 28 96.4 33 ............G............... ATTTGTTTGAATCCCGATTAAAATCTGTTGTTT 76031 28 96.4 32 ............G............... TTCCACAACAAATACACGGTCAGCGTTGGCAA 76091 28 96.4 32 ............G............... TTACGGCCTAATTAGTCGAATGGTGCCAGCAC 76151 28 96.4 32 ............G............... GCTACCGATTTGGCCTCTCGTGTTAAATGGGT 76211 28 96.4 32 ............G............... GTAGCCGCTGTCAGTGAATGATTGAATAAATA 76271 28 96.4 32 ............G............... ATTGCAAAATTGGGTTTATTAAAAAGGTGAAT 76331 28 96.4 32 ............G............... ACCCACTAAACTTGAAAACCATTCCATGATCA 76391 28 96.4 32 ............G............... TCTAATAATTACAGAGATAAGGCGAAAAACAC 76451 28 96.4 32 ............G............... AGATAAACGACCAGAACCTGATGATGCTGACA 76511 28 96.4 32 ............G............... TTTGTTTTCAGCAATAGACAATTTTTTTGTTA 76571 28 96.4 32 ............G............... AAGCGGCAGGCAAAAGTTAAGCGATGGTATGA 76631 28 96.4 32 ............G............... CTGTAAACTGTGAAATTATATTCACAGTACCT 76691 28 96.4 32 ............G............... TGTACCAACTGCTCGAAGTGCGGCTGATTTTA 76751 28 96.4 32 ............G............... CGTTACCGAGAAACATGAAAATGCAGGTTGCG 76811 28 96.4 32 ............G............... GGGCTTAGTAGGGGCAGGTACATCGTAAATAT 76871 28 96.4 32 ............G............... ATTGTATTTAAGCCCGCCGCCAACTTGCGGGT 76931 28 96.4 32 ............G............... TTTGCTAGCAACCTCGCGATAAGCCGTTTGAT 76991 28 96.4 32 ............G............... GCCGCAGGCGGGACGTTTAAAGGCACTGTTTA 77051 28 96.4 32 ............G............... AATGATAAGAACAGTACAGATTGGGCTTATAT 77111 28 96.4 32 ............G............... ATTTGGTCATACACTGGCGCGTATTCAGTATG 77171 28 96.4 32 ............G............... ATCACTTGGACTGATTATCAAGCTAGCAATTT 77231 28 96.4 32 ............G............... ATTGCCGTTACGTTAAACGTACCGCTCGGAGA 77291 28 96.4 32 ............G............... ATCCAATGATTAGGGTTGTGTGGTGCAGGAGT 77351 28 85.7 0 ..........G..............GTG | ========== ====== ====== ====== ============================ ================================= ================== 75 28 98.3 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : ATTAAGTCGATCAAACCAGTACCAGAAAATGTGACCTATGCGGCTTTTGTTAGACAGCATGTAAAAGGTGAGGCGCGTATAGAAAAAGATATGTTAAGTAAAGCACAACGTTGGGCTGAAAAATCAGGTCAACCGCTTGATACTTGTTTAGCAGAGCTTGAAAAAACTAAACCCAAAGCCGTTAACTCATTACCTTTTATTTGGTTAGAAAGCCAAGAAACTAAACAACGTGATGCAGCTAACAGTAGAAAATTTCCACTATTTATCAAAAAGGTAGAAATTGGGAAAAAACAAACAGGCATATTTAATTGTTATGGTTTAAGTGTAAATCACAGCAATAAAGAAAAGCTGGCTAGTATTCCCCAGTTTTAACCTTTATTTTTGCTCTTTAAAAATTAGAAACTAAAACAATAAGTTACAACATCACTAAAAAATTAGGTAAAAATAGATAATTTTACCTAATCACCTGTTGTAACTTATTTTTTGCCTGATATTCTATT # Right flank : GACGATGGACCGAAACGATTTACCGAATAAACAGTGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTATAAATCGTTAGCTTAGCGTGATTATTCGGGGTTTCTCGTGCTAAAGCACGACCTACGGTACTGGTAGGTGATGAGTGACCGGTGTAACCAAGCCCTTGGATGGATTATAAATCGCTAGCTTAGCGTGATCATTCGGGGTTACTCGCGCTAAAGCACGACCTACGGTACTGGTATTTAGGCGATGAGTGACCGGTGTAACCAAGCCCTTGGATGGATTATAAATCGTTAGCTTAGCGTGATCATTCGGGGTTTCTCGCGCTAAAGCACGACCTACGGTACTGGTATTTAGGTGATGAGTGATCGATGTAACCAAGCTCCATGGATGGATTATAAATCGCTAGCTTAGCGTGATCATTCGGGGTTACTCGCGCTAAAGCACGACCTACGCTACTGGTATTTAGGTGAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCACGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //