Array 1 43056-44591 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCR01000025.1 Escherichia coli strain A043ch NODE_25_length_64263_cov_20.1061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43056 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 43117 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 43178 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 43239 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 43300 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 43361 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 43422 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 43483 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 43544 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 43605 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 43666 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 43727 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [43751] Deletion [43768] 43769 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 43830 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 43891 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 43952 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 44013 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 44074 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 44135 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 44196 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 44257 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 44318 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 44379 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 44441 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 44502 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 44563 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6345-7593 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCR01000014.1 Escherichia coli strain A043ch NODE_14_length_102664_cov_21.4144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6345 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 6406 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 6467 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 6528 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 6589 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 6650 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 6711 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 6772 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 6833 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 6894 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 6955 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 7016 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 7077 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 7138 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 7199 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 7260 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 7321 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 7382 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 7443 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 7504 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 7565 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //