Array 1 398873-399999 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQY01000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UGA13 UGA13_Contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 398873 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 398934 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 398995 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 399056 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 399117 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 399178 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 399239 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 399300 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 399361 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 399422 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 399484 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 399545 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 399606 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 399667 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 399728 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 399789 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 399850 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 399911 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 399972 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 416132-417547 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQY01000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UGA13 UGA13_Contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 416132 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 416193 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 416255 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 416316 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 416377 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 416438 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 416499 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 416560 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 416621 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 416682 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 416743 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 416804 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 416865 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 416927 29 100.0 74 ............................. AATAAGGCGCGGTACCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 417030 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 417091 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 417152 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 417213 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 417274 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 417335 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 417396 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 417457 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 417518 29 96.6 0 A............................ | A [417544] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //