Array 1 417277-418433 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCH01000078.1 Lactiplantibacillus pentosus strain IG12 NODE_188_length_520438_cov_241.454651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 417277 36 100.0 30 .................................... ACACCTTGCTATAATTGCGCGGACTCGTGC 417343 36 100.0 30 .................................... CCGATTATAAAGAATTTGGCGCGTGGAAGC 417409 36 100.0 30 .................................... AGAATCTGGTGTTACTGAATCAGAGGCCAA 417475 36 100.0 30 .................................... AAGCCAACAGTTATCATCGAGGTAAGATTT 417541 36 100.0 30 .................................... TTGGTGTGTTGACATTCCATAGGAACAAGC 417607 36 100.0 30 .................................... TGGTGTTGACCCACGGGCGGTTATCCAACT 417673 36 100.0 30 .................................... GCGACAAAAGTACGACCGCCGAAAAGACGA 417739 36 100.0 30 .................................... TTCTGGACTTAGAACGCCCATCAACCAAGC 417805 36 100.0 29 .................................... TATCTCATGTGATCTAGCGACTCACTACT 417870 36 100.0 30 .................................... TGATTACCTTGCTGAAAGCCAACCGTATTT 417936 36 100.0 30 .................................... ACTATTAAGCGGCTATGGATTAATAGTTTA 418002 36 100.0 30 .................................... GCTATTGGCTATCTGATTTGGGTATTCAAG 418068 36 100.0 30 .................................... TAACAGGCATCACACCCGTCCGGTGGTTTA 418134 36 100.0 30 .................................... AAACGTCTTTGGCATAGCCATTCATTGGCT 418200 36 100.0 30 .................................... TAGATTCAGAGAAAGAATTAGAACCAGAGC 418266 36 100.0 30 .................................... AAACCATACCATTAGAACCAACAACACAAG 418332 36 97.2 30 ..........................T......... TGATGGTTGGTCCTAATCCGGCAATTGCAG 418398 36 88.9 0 ........................T..AG.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.2 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGTTTGTTTATGAAGAAGATACAGGCCCAGATTATTAAGTTAATGGCCGATGAACAACAAGTAGCGGTCTTGGACCAAAGCCGATCCATGATTGCCAAAGTGATGGAAGCAAGTTTTCTATTGGATCTGCCACTAGATGTAGAGGAAGCGCCGGGCCTAGAACAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAAGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAATGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : CACTTTTCTTAGTATGTATTTGTACGCGCCTAGTCAAAGAAAGTCCGTTGTTAGATCTATATTTTAATCCTAGGGATATTTGACCGGGGGTCGCTAAGGGCTTAGCTCATACGAGTAAGATCAGATTGTCACTAGGTGGACGATAAATTCTTTCTTTGAGAAAAAGGTTTGGCATCTTTCTCGATAATCGATGTCTTCTGCAATGACATCTATGCTTAGGCGCATACAGGGAGATGTTCATAATGACAGTAAAAGTACAAAAACAGGGTCATTCGCTAATGATTCCGATACCAACGGATTTTCATGTTATGGAGAACGCAGAATACCAGCCGGTTATGGATGATGACAACGGAATCTTATCGTTTATCCCAGTGCATAAGAATATCTTTGAACAAAATCCTGACTATGATTTCCAAGCCGCACTCAAAGAAATGAGTTTACCCGATAATGGGAAACTGGTTGGGAAAGAAAACGTTTGGAAATGAAGTAGAAATAGCATA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 60297-59902 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCH01000018.1 Lactiplantibacillus pentosus strain IG12 NODE_21_length_72966_cov_143.095779, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 60296 28 100.0 33 ............................ CAACGGTATCACATACGTTAAAGATACGCCATT 60235 28 100.0 33 ............................ CAACGGTATCACATACGTTAAAGATACGCCATT 60174 28 100.0 33 ............................ TAAGGAGGTATTCCAGATGTACGCAGTTAAGAC 60113 28 96.4 34 .............G.............. TGGGAAGGTACTTCGGAAGATGCTGATCCGATTT 60051 28 89.3 33 ..A.........C..A............ TATGAATTGGTACAACCACGACGAAATTCCATT 59990 28 89.3 33 ..A.........C..A............ TGGATTGATTAGATCTAGAGATTCATTAGTTAA 59929 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ================================== ================== 7 28 93.4 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAAGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGTTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTCGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAATAATTTGTA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : ATTCTATTCCCCGCGCATACGGGGGTGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63725-62915 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCH01000018.1 Lactiplantibacillus pentosus strain IG12 NODE_21_length_72966_cov_143.095779, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 63724 28 100.0 33 ............................ TCACACTGGACAACAACCGATTATCTCAGTTAA 63663 28 100.0 33 ............................ TCACACTGGACAACAACCGATTATCTCAGTTAA 63602 28 100.0 33 ............................ CTTGCGAACGATGACGACGAAAAATAGGCCGCG 63541 28 100.0 30 ............................ GTCAACGTTAGCTTTTACCTTTGTCTACAA 63483 28 100.0 33 ............................ TGCGAAATGTTTATCCGACAATTTGGAATAATG 63422 28 100.0 33 ............................ TCAGACGCCGTGACGGCTTAGAATCAACGTAGT 63361 28 100.0 33 ............................ TGATAGTCCGGAGACGGGCAACAAAGAAATGGT 63300 28 82.1 33 .....................AAC.GA. CATTGCACATGTGGCCAAAACGTCGACGCCGTA 63239 28 85.7 35 ...............A..A..A...C.. TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 63176 27 89.3 34 ...........A...A.....-...... TTAACACGCCGGTAGTCCCGTTTTTGGGGGATTG 63115 28 89.3 33 ......T........A.....C...... CATGACTGCGCACTATACTGAGTCAGCCCGACT 63054 28 78.6 33 ..T.....T......A.A..A.....T. GAGGTGCACTCTCGTGAGAAGCGTAGACGCTAG 62993 28 85.7 23 ......TT...........A...C.... TCGCTGAATCGATATCCACCATT Deletion [62943] 62942 27 78.6 0 T.A............A......C-...T | G [62917] ========== ====== ====== ====== ============================ =================================== ================== 14 28 92.1 32 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGGTCAAACATTCACGCCTATTAAACGTCGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTTGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGATCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2917-2401 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCH01000068.1 Lactiplantibacillus pentosus strain IG12 NODE_121_length_104474_cov_164.524689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2916 28 100.0 33 ............................ CGGTGAAACTGATGAGTATACTTATTGGATGCA 2855 28 96.4 33 ..........T................. CAAGTAACCGTTAGGAACTGCTTTAATACGTTG 2794 28 96.4 33 ..........T................. TGTGTTAACACTCATTCTTCACCCTCCATTGAC 2733 28 100.0 33 ............................ TCACCTTCCTAAAACGGCATGTCGGCGTCACTG 2672 28 96.4 33 .....................T...... TCACTCATCCAATCACCACCAGTCGTAGGTTGC 2611 28 100.0 33 ............................ AGTGACGCCGACTACTGCAGCGACTACAGGAAT 2550 28 96.4 33 ......T..................... TTATACCACACATGCAGGCGTTTCAAGTGTCTA 2489 28 100.0 33 ............................ CGGTCATAGATTAGTGACCACATATACAGGGCA 2428 28 92.9 0 .................A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCGAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTCGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAATCCAAGTTAATGTAAAACCTCAATTTTGCAATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAATAAAGCCTAAAGTAAGAAAAAGTAACATGCAAATCACTCTAAATTTCTTACGCATTGAAATATTTAGTAAGCGGTTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAGCGCATCAAAAAAATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTTCGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAGTACATCTTCAATCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTAAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATGCTCGCTCCAATATGCTTGGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //